Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 0.0e+00 1710.3 865 100.0
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 9.6e-220 767.7 860 51.7
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.4e-209 732.6 858 49.2
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 4.2e-191 672.5 778 48.1
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 2.1e-190 670.2 767 47.7
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 3.5e-190 669.5 779 45.8
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 1.0e-189 667.9 776 47.0
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.5e-188 663.3 783 46.1
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 9.7e-188 661.4 759 47.7
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 9.7e-188 661.4 766 47.5
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.6e-187 660.6 760 47.1
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 3.7e-187 659.4 793 47.8
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 6.3e-187 658.7 774 46.6
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.4e-186 657.5 758 47.6
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.5e-185 654.1 758 47.8
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.6e-185 653.3 760 47.8
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 5.9e-185 652.1 763 47.8
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.0e-184 651.4 775 47.0
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 1.0e-184 651.4 760 47.0
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 2.2e-184 650.2 771 47.0
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.9e-184 649.8 783 47.3
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 3.8e-184 649.4 763 47.1
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 5.0e-184 649.0 787 45.1
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 1.1e-183 647.9 765 46.8
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.4e-183 647.5 777 47.1
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 1.9e-183 647.1 765 46.8
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 2.5e-183 646.7 760 47.4
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 2.1e-182 643.7 775 46.7
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 2.1e-182 643.7 798 45.5
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.7e-182 643.3 774 46.1
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.7e-182 643.3 774 46.1
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 2.7e-182 643.3 777 46.6
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 2.7e-182 643.3 777 46.8
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 3.6e-182 642.9 760 47.2
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 6.1e-182 642.1 760 47.2
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 6.1e-182 642.1 763 47.2
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 7.9e-182 641.7 805 44.7
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 7.9e-182 641.7 762 46.1
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 1.0e-181 641.3 766 46.2
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.3e-181 640.2 761 46.0
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.3e-181 640.2 759 47.3
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 2.3e-181 640.2 777 46.6
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 3.0e-181 639.8 777 46.1
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 3.0e-181 639.8 761 47.0
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 3.9e-181 639.4 774 45.6
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.9e-181 639.4 768 46.4
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 3.9e-181 639.4 758 47.2
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 6.7e-181 638.6 764 46.7
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 6.7e-181 638.6 773 45.1
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.0e-180 637.1 771 45.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.5e-180 636.7 759 45.7
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 3.3e-180 636.3 769 45.8
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.3e-179 634.4 762 46.5
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 1.7e-179 634.0 763 46.5
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 1.7e-179 634.0 778 45.5
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 2.2e-179 633.6 754 46.0
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 4.8e-179 632.5 805 44.2
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 6.3e-179 632.1 774 45.6
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 6.3e-179 632.1 754 46.0
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.2e-179 631.7 762 46.2
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 8.2e-179 631.7 766 45.4
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.1e-178 631.3 776 45.9
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 1.4e-178 630.9 765 46.7
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.8e-178 630.6 760 45.3
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 1.8e-178 630.6 776 45.6
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 2.4e-178 630.2 777 45.9
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 4.1e-178 629.4 757 45.8
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 6.9e-178 628.6 779 46.5
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.2e-177 627.9 762 46.5
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.5e-177 627.5 764 47.4
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.0e-177 627.1 779 45.2
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.4e-177 626.3 781 46.1
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 3.4e-177 626.3 781 45.2
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.5e-177 625.9 764 46.3
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 4.5e-177 625.9 775 45.5
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 7.7e-177 625.2 762 47.1
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 7.7e-177 625.2 766 45.0
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 7.7e-177 625.2 784 44.9
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.7e-176 624.0 779 45.1
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.7e-176 624.0 776 45.1
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.0e-176 622.5 762 46.9
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 6.5e-176 622.1 777 45.7
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.1e-175 621.3 769 45.8
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.9e-175 620.5 772 45.3
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 2.5e-175 620.2 768 45.2
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.2e-175 619.8 762 46.7
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 4.2e-175 619.4 777 45.0
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 5.5e-175 619.0 784 45.7
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.2e-174 617.8 755 46.1
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 2.1e-174 617.1 773 45.1
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.7e-174 616.7 779 44.8
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 2.7e-174 616.7 792 43.6
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 3.6e-174 616.3 772 45.5
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.6e-174 616.3 772 45.5
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 6.1e-174 615.5 778 45.8
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.0e-173 614.8 774 44.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.8e-173 614.0 810 45.2
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 3.9e-173 612.8 782 45.7
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.5e-172 610.9 774 44.2
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.3e-172 609.8 765 45.5
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.3e-172 609.8 762 45.4
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 3.1e-170 603.2 789 44.4
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 3.1e-170 603.2 757 45.7
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.1e-170 602.8 758 45.0
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 5.3e-170 602.4 768 45.6
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 3.5e-169 599.7 779 43.3
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.3e-168 597.8 766 43.5
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.3e-168 597.8 780 43.3
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.7e-168 597.4 780 43.5
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 3.8e-168 596.3 785 43.2
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.5e-167 594.3 775 43.9
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.9e-167 594.0 782 43.1
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.9e-167 594.0 779 43.4
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.2e-166 591.3 760 45.3
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.2e-166 591.3 758 44.6
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 2.1e-166 590.5 757 45.2
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 3.6e-166 589.7 773 44.8
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 4.7e-166 589.3 781 43.3
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.8e-165 587.4 782 43.1
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.3e-165 587.0 759 43.2
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.2e-165 585.9 774 44.4
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.3e-164 583.2 764 43.6
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 7.4e-164 582.0 777 43.4
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 8.2e-163 578.6 585 53.3
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.8e-162 577.4 777 43.9
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 3.1e-162 576.6 785 43.1
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 2.2e-160 570.5 797 41.4
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.1e-159 568.2 739 43.7
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 9.4e-159 565.1 864 40.4
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.6e-158 564.3 775 42.7
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 7.5e-156 555.4 764 43.2
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 9.8e-156 555.1 778 44.2
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.3e-155 554.7 764 43.2
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.7e-155 554.3 746 44.1
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 3.5e-153 546.6 745 43.5
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.8e-149 534.3 765 42.1
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 7.5e-148 528.9 770 41.8
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 4.1e-138 496.5 760 40.0
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.1e-138 496.5 775 39.5
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 5.4e-138 496.1 852 37.1
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 4.6e-137 493.0 771 39.3
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.7e-134 483.0 750 39.9
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 5.4e-130 469.5 741 39.8
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 2.2e-123 447.6 684 40.6
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.5e-116 424.9 756 35.4
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.2e-108 398.7 818 34.7
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.9e-107 394.0 485 45.6
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 9.0e-101 372.5 430 48.8
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.2e-100 372.1 430 48.8
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.6e-97 360.1 773 31.7
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.5e-95 354.4 422 46.2
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 6.0e-89 333.2 278 57.2
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 7.4e-87 326.2 206 70.9
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 2.0e-84 318.2 383 44.9
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.5e-71 274.6 424 39.9
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.2e-70 271.6 412 38.6
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.3e-59 235.7 790 28.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.5e-36 157.9 233 38.6
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.0e-31 142.1 68 83.8
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 2.4e-29 135.2 274 34.3
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.0e-23 115.5 146 40.4
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.5e-20 104.8 53 79.2
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 5.8e-15 87.4 150 32.0
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 3.2e-13 81.6 101 43.6
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.3e-11 75.5 128 32.8
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.9e-11 74.7 100 35.0
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 6.2e-09 67.4 46 65.2
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.5e-07 62.8 39 66.7


User provided reference genes

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