Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.0e-124 449.1 224 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.5e-89 332.0 215 74.9
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.9e-89 331.3 218 73.9
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 2.3e-85 319.3 218 70.6
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 7.0e-82 307.8 211 73.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.6e-81 306.6 211 71.1
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 4.6e-81 305.1 217 70.5
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 4.6e-81 305.1 217 70.5
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 4.6e-81 305.1 217 70.5
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 5.9e-81 304.7 216 69.9
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.0e-80 303.9 211 70.6
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 6.6e-80 301.2 217 68.2
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 8.6e-80 300.8 211 70.6
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 8.6e-80 300.8 218 67.0
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.9e-79 299.7 218 68.8
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.9e-79 299.7 217 70.5
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.5e-79 299.3 217 69.6
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 3.3e-79 298.9 217 69.6
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 5.6e-79 298.1 217 67.7
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 7.3e-79 297.7 212 68.9
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 7.3e-79 297.7 212 69.8
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 9.5e-79 297.4 222 66.7
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 9.5e-79 297.4 218 67.9
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.2e-78 297.0 216 68.5
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-78 297.0 219 67.1
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.2e-78 297.0 211 71.6
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.6e-78 296.6 219 67.1
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 1.6e-78 296.6 218 69.3
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.6e-78 296.6 219 67.1
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.6e-78 296.6 220 68.2
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.1e-78 296.2 219 67.1
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 2.1e-78 296.2 219 67.1
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 2.1e-78 296.2 219 67.1
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 2.8e-78 295.8 219 66.7
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 2.8e-78 295.8 219 66.7
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 3.6e-78 295.4 211 69.7
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.6e-78 295.4 219 67.1
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 3.6e-78 295.4 217 67.7
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 3.6e-78 295.4 218 69.3
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 4.7e-78 295.0 218 67.9
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 6.2e-78 294.7 214 67.8
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 6.2e-78 294.7 218 66.5
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.0e-77 293.9 212 67.5
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.0e-77 293.9 210 69.5
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.0e-77 293.9 217 66.8
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.4e-77 293.5 217 66.4
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.4e-77 293.5 211 69.2
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 1.4e-77 293.5 218 67.4
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.4e-77 293.5 222 65.8
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 2.3e-77 292.7 212 67.5
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 2.3e-77 292.7 218 66.5
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 3.1e-77 292.4 217 67.3
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 3.1e-77 292.4 222 65.3
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 4.0e-77 292.0 211 69.7
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 4.0e-77 292.0 214 66.4
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 5.2e-77 291.6 210 69.0
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 8.9e-77 290.8 216 67.6
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 8.9e-77 290.8 219 67.6
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 8.9e-77 290.8 218 66.5
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 8.9e-77 290.8 216 67.6
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 8.9e-77 290.8 210 68.6
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.2e-76 290.4 216 67.6
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.2e-76 290.4 210 69.0
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.5e-76 290.0 218 67.0
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.5e-76 290.0 211 68.2
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 2.0e-76 289.7 210 69.0
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 3.4e-76 288.9 211 68.2
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 4.4e-76 288.5 210 68.6
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 5.8e-76 288.1 216 66.2
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 7.5e-76 287.7 216 67.1
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 7.5e-76 287.7 221 64.3
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 9.8e-76 287.3 210 68.1
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.7e-75 286.6 252 59.1
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.7e-75 286.6 217 64.5
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 2.9e-75 285.8 221 63.3
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 3.7e-75 285.4 217 65.4
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 3.7e-75 285.4 211 68.7
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.9e-75 285.0 210 65.7
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.4e-74 283.5 210 69.0
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.9e-74 283.1 211 65.4
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.9e-74 283.1 210 65.2
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 2.4e-74 282.7 210 65.7
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.4e-74 282.7 210 66.2
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.2e-73 280.4 210 64.3
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.2e-73 280.4 210 64.3
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.6e-73 280.0 219 63.0
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 6.0e-73 278.1 212 67.0
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.0e-72 277.3 210 64.3
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.0e-72 277.3 207 68.1
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.0e-72 277.3 224 64.3
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.3e-72 276.2 217 62.7
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 8.6e-72 274.2 219 63.0
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.5e-71 273.5 219 63.0
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.5e-71 273.5 220 63.2
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 9.5e-71 270.8 219 63.0
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.6e-70 270.0 207 66.2
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.6e-70 270.0 207 66.2
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.8e-70 269.2 266 55.3
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 2.8e-70 269.2 261 54.8
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.7e-70 268.5 221 62.4
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 2.3e-69 266.2 219 61.6
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 2.3e-69 266.2 219 61.6
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 3.1e-69 265.8 219 61.2
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 4.0e-69 265.4 219 61.2
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 5.2e-69 265.0 219 61.2
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.2e-68 263.8 219 60.7
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 4.4e-68 261.9 217 61.3
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 2.9e-67 259.2 217 63.1
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.9e-66 256.5 216 62.0
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.6e-65 251.9 211 60.2
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.3e-64 249.6 211 59.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.0e-64 249.2 182 67.0
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 3.3e-63 245.7 214 57.5
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 3.3e-63 245.7 213 57.7
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.9e-60 234.2 180 62.8
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.4e-58 229.6 176 63.6
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.4e-52 208.8 219 50.2
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 7.8e-49 198.0 144 66.0
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 3.6e-46 189.1 152 64.5
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 1.3e-43 180.6 130 66.9
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.8e-43 179.1 140 63.6
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 3.3e-39 166.0 120 67.5
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.1e-38 163.3 120 65.8
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 3.1e-37 159.5 158 54.4
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 1.5e-36 157.1 204 43.1
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.5e-33 146.0 113 61.9
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 6.0e-33 145.2 215 38.1
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.3e-32 143.3 165 45.5
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.3e-31 139.4 124 54.0
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.1e-30 136.7 126 59.5
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.7e-30 136.0 219 36.5
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 6.2e-30 135.2 110 62.7
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.1e-29 132.9 92 69.6
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 4.0e-29 132.5 181 40.3
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.9e-27 126.3 204 40.7
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.9e-27 126.3 219 36.5
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 4.9e-27 125.6 88 70.5
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 2.1e-25 120.2 223 34.5
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.6e-25 119.0 224 33.9
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.5e-23 114.0 93 60.2
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.6e-22 110.5 89 62.9
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 1.1e-21 107.8 195 34.4
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.1e-21 106.3 169 36.1
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.5e-20 104.0 88 59.1
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 5.9e-20 102.1 76 65.8
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 9.3e-18 94.7 71 63.4
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 3.9e-16 89.4 70 61.4
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 6.7e-16 88.6 67 64.2
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.3e-14 84.3 81 55.6
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 3.7e-14 82.8 78 57.7
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.1e-13 81.3 63 65.1
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.8e-13 80.5 87 48.3
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 3.1e-13 79.7 56 66.1
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 9.0e-13 78.2 67 59.7
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 2.0e-12 77.0 58 63.8
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 8.5e-11 71.6 55 63.6
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 2.5e-10 70.1 60 56.7
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.5e-10 70.1 56 62.5
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 3.2e-10 69.7 68 52.9
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 5.5e-10 68.9 65 53.8
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 7.2e-10 68.6 64 54.7
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 3.6e-09 66.2 59 55.9
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 4.6e-09 65.9 65 53.8
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 5.1e-08 62.4 57 59.6
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 8.8e-08 61.6 92 44.6
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 8.8e-08 61.6 43 67.4
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 2.6e-07 60.1 47 61.7
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.3e-06 57.8 54 55.6


User provided reference genes

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