Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 1.8e-142 509.6 328 100.0
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 1.3e-68 264.2 316 59.8
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 1.1e-64 251.1 325 54.8
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.5e-64 250.8 322 52.5
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 1.5e-64 250.8 319 54.9
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 1.9e-64 250.4 309 56.3
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 4.3e-64 249.2 323 58.2
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 2.2e-63 246.9 322 49.7
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 2.8e-63 246.5 320 61.9
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 3.7e-63 246.1 327 56.0
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 3.7e-63 246.1 323 55.7
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 4.8e-63 245.7 325 57.8
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 6.3e-63 245.4 320 57.8
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 8.2e-63 245.0 327 62.1
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 8.2e-63 245.0 327 62.1
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 8.2e-63 245.0 323 59.1
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 8.2e-63 245.0 313 55.9
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 1.1e-62 244.6 325 53.2
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 1.8e-62 243.8 327 56.3
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 2.4e-62 243.4 321 52.0
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 5.3e-62 242.3 320 55.3
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 9.1e-62 241.5 316 48.7
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 9.1e-62 241.5 318 61.0
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 1.2e-61 241.1 318 61.0
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 1.5e-61 240.7 317 54.9
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 2.0e-61 240.4 316 48.4
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 4.5e-61 239.2 318 55.0
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 5.9e-61 238.8 316 57.6
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 7.7e-61 238.4 324 55.2
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 7.7e-61 238.4 320 56.6
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 1.0e-60 238.0 327 53.8
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 1.0e-60 238.0 316 59.2
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 1.3e-60 237.7 324 54.6
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 1.3e-60 237.7 320 52.2
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 1.7e-60 237.3 323 54.2
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 1.7e-60 237.3 316 57.3
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 1.7e-60 237.3 314 57.3
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 3.8e-60 236.1 325 52.9
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 5.0e-60 235.7 323 51.4
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 6.5e-60 235.3 320 53.4
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 6.5e-60 235.3 330 52.4
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 1.4e-59 234.2 324 51.5
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 3.2e-59 233.0 333 52.0
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 3.2e-59 233.0 318 54.1
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 5.5e-59 232.3 317 57.4
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 9.4e-59 231.5 323 53.3
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 9.4e-59 231.5 322 51.6
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.2e-58 231.1 324 51.9
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 1.2e-58 231.1 333 56.2
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 1.2e-58 231.1 317 47.0
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 1.6e-58 230.7 324 50.3
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 1.6e-58 230.7 324 51.5
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 1.6e-58 230.7 318 52.8
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 2.1e-58 230.3 318 57.9
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 2.1e-58 230.3 318 57.9
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 2.1e-58 230.3 317 58.0
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 3.6e-58 229.6 324 51.5
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 3.6e-58 229.6 323 52.6
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 4.6e-58 229.2 314 56.7
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 6.1e-58 228.8 321 50.8
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 6.1e-58 228.8 318 52.2
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 7.9e-58 228.4 321 50.2
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 1.4e-57 227.6 318 54.1
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 1.4e-57 227.6 344 44.2
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 1.8e-57 227.3 317 52.4
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 1.8e-57 227.3 322 52.8
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 2.3e-57 226.9 327 59.0
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 2.3e-57 226.9 324 50.9
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 2.3e-57 226.9 329 53.8
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 3.9e-57 226.1 319 54.2
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 3.9e-57 226.1 317 52.7
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 3.9e-57 226.1 321 50.8
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 6.7e-57 225.3 316 52.5
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 6.7e-57 225.3 321 51.4
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 1.1e-56 224.6 323 48.0
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 2.0e-56 223.8 318 49.4
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.6e-56 223.4 312 54.2
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 3.3e-56 223.0 312 54.5
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 3.3e-56 223.0 344 44.2
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 7.4e-56 221.9 321 50.5
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 9.7e-56 221.5 317 57.7
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 1.3e-55 221.1 319 54.2
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 2.2e-55 220.3 321 51.1
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 3.7e-55 219.5 318 51.3
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 4.8e-55 219.2 314 59.6
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 6.3e-55 218.8 326 47.2
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 1.4e-54 217.6 355 44.2
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 3.1e-54 216.5 300 56.0
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 3.1e-54 216.5 332 49.7
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 5.3e-54 215.7 327 52.6
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 2.6e-53 213.4 316 50.0
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 7.7e-53 211.8 315 54.6
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.3e-52 211.1 320 50.3
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 8.5e-52 208.4 323 44.0
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 9.4e-51 204.9 331 37.2
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 1.8e-49 200.7 315 49.2
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 5.7e-48 195.7 324 50.3
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 9.4e-43 178.3 281 53.7
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 7.0e-38 162.2 230 68.3
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 3.4e-32 143.3 341 44.3
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 7.7e-29 132.1 170 41.8
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 1.0e-28 131.7 174 40.8
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 1.7e-28 131.0 141 45.4
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.5e-27 127.1 161 41.6
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 4.2e-27 126.3 166 41.0
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 9.5e-27 125.2 169 39.1
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 1.6e-26 124.4 170 43.5
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 2.8e-26 123.6 264 32.6
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 4.7e-26 122.9 159 41.5
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 6.1e-26 122.5 173 53.2
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 6.1e-26 122.5 169 47.9
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 1.0e-25 121.7 167 39.5
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 2.6e-24 117.1 171 46.2
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 3.4e-24 116.7 99 58.6
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 5.7e-24 115.9 97 56.7
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 9.8e-24 115.2 173 37.6
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 3.1e-22 110.2 172 36.6
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 2.7e-21 107.1 97 52.6
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 2.5e-19 100.5 72 62.5
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 3.3e-19 100.1 72 61.1
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 5.6e-19 99.4 94 47.9
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 1.2e-16 91.7 69 63.8
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 1.3e-15 88.2 282 40.4
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 1.4e-14 84.7 57 71.9
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.9e-13 79.3 334 25.7
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 1.9e-11 74.3 57 57.9
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 4.9e-07 59.7 54 53.7


User provided reference genes

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