Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 0.0e+00 1113.2 593 100.0
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 8.5e-119 431.8 513 50.1
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.6e-117 427.6 509 49.1
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 6.8e-116 422.2 519 47.2
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.2e-115 421.4 535 47.7
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.2e-115 421.4 510 48.2
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.2e-115 421.4 513 47.4
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 2.0e-115 420.6 514 48.4
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 2.6e-115 420.2 514 48.2
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.6e-115 420.2 494 48.6
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 9.8e-115 418.3 508 47.0
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 9.8e-115 418.3 520 47.9
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.3e-114 417.9 510 49.0
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.7e-114 417.5 508 47.4
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.2e-114 417.2 536 47.0
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 3.7e-114 416.4 514 48.2
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 4.8e-114 416.0 514 47.9
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 4.8e-114 416.0 535 46.4
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 6.3e-114 415.6 508 48.4
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 6.3e-114 415.6 521 47.8
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-113 414.8 514 47.3
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.1e-113 414.8 508 46.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.1e-113 414.8 516 48.3
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.1e-113 414.8 520 48.3
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.4e-113 414.5 521 47.8
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.8e-113 414.1 528 46.0
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.8e-113 414.1 514 47.9
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.4e-113 413.7 514 48.1
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 2.4e-113 413.7 514 47.1
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.4e-113 413.7 514 47.1
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.4e-113 413.7 520 48.1
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 4.1e-113 412.9 521 47.8
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 4.1e-113 412.9 521 47.4
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 4.1e-113 412.9 507 47.3
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 4.1e-113 412.9 514 47.9
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 5.4e-113 412.5 513 47.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 5.4e-113 412.5 512 46.7
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 7.0e-113 412.1 514 47.7
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 9.1e-113 411.8 514 47.1
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 9.1e-113 411.8 514 47.5
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 9.1e-113 411.8 514 47.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-112 411.4 514 47.1
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.2e-112 411.4 519 46.2
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.2e-112 411.4 540 45.7
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.6e-112 411.0 512 46.9
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 2.0e-112 410.6 521 47.6
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 4.5e-112 409.5 513 47.0
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 5.9e-112 409.1 513 47.6
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 5.9e-112 409.1 515 46.0
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 5.9e-112 409.1 514 47.5
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 7.7e-112 408.7 525 46.5
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 7.7e-112 408.7 534 46.6
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 7.7e-112 408.7 516 47.3
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.3e-111 407.9 512 46.1
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.3e-111 407.9 529 46.5
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.3e-111 407.9 519 46.8
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.3e-111 407.1 518 46.3
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.9e-111 406.8 514 46.9
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.9e-111 406.8 509 46.8
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.9e-111 406.8 512 46.7
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 3.8e-111 406.4 513 47.0
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 3.8e-111 406.4 513 46.0
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 3.8e-111 406.4 509 47.5
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 3.8e-111 406.4 508 46.5
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 5.0e-111 406.0 508 46.7
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 5.0e-111 406.0 522 46.2
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.0e-111 406.0 522 46.4
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.6e-111 405.6 522 46.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 8.6e-111 405.2 514 46.5
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.5e-110 404.4 515 46.6
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.5e-110 404.4 514 46.5
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.5e-110 404.4 508 46.1
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.5e-110 404.4 514 47.7
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.5e-110 404.4 505 45.5
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 3.3e-110 403.3 519 45.3
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 3.3e-110 403.3 529 46.3
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.2e-110 402.9 509 46.4
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 4.2e-110 402.9 510 47.5
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 5.5e-110 402.5 508 46.1
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 5.5e-110 402.5 514 46.1
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 7.2e-110 402.1 509 46.2
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.6e-109 401.0 511 47.0
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.6e-109 401.0 513 45.8
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.6e-109 401.0 518 46.3
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.1e-109 400.6 514 45.5
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.1e-109 400.6 519 44.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.8e-109 400.2 515 47.4
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.6e-109 399.8 513 46.0
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.6e-109 399.8 513 46.2
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.6e-109 399.8 509 46.2
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.7e-109 399.4 515 47.4
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 4.7e-109 399.4 509 46.0
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 4.7e-109 399.4 511 46.6
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 4.7e-109 399.4 515 46.2
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.7e-109 399.4 511 47.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 6.1e-109 399.1 508 45.9
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 6.1e-109 399.1 509 46.6
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.4e-108 397.9 514 45.5
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.8e-108 397.5 502 46.4
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.8e-108 397.5 513 45.6
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.8e-108 397.5 503 45.9
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 2.3e-108 397.1 512 46.9
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.0e-108 396.7 508 45.7
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.0e-108 396.7 514 45.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 8.9e-108 395.2 509 45.8
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 8.9e-108 395.2 509 45.8
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.2e-107 394.8 509 45.8
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 4.4e-107 392.9 503 45.7
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 5.7e-107 392.5 518 46.1
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 7.5e-107 392.1 517 46.2
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 9.8e-107 391.7 509 45.4
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.3e-106 391.3 515 46.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 2.2e-106 390.6 497 45.1
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 3.5e-104 383.3 511 43.6
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 7.8e-104 382.1 530 43.6
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.0e-103 381.7 469 45.8
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 6.6e-103 379.0 323 61.0
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 8.6e-103 378.6 555 41.6
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 8.0e-101 372.1 514 44.0
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.0e-100 371.7 508 45.7
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.8e-100 370.9 544 44.1
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 3.1e-100 370.2 447 48.1
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 4.4e-99 366.3 518 41.7
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.7e-98 364.4 628 39.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.3e-94 350.1 624 36.9
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.6e-93 347.8 456 45.8
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 7.0e-89 332.4 243 67.1
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 3.0e-87 327.0 421 47.0
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 2.1e-85 320.9 247 63.6
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.3e-79 300.8 267 56.2
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 2.1e-77 294.3 425 42.6
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 3.8e-66 256.9 221 57.0
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-64 251.9 180 68.9
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.7e-63 248.1 503 36.8
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 4.0e-60 236.9 241 52.7
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 3.8e-58 230.3 334 39.5
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 6.2e-53 213.0 285 46.7
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 3.1e-52 210.7 364 40.4
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 2.8e-45 187.6 257 42.8
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.2e-35 155.6 332 38.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 7.9e-32 142.9 112 61.6
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-26 125.9 397 31.0
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 3.7e-21 107.5 93 59.1
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 3.7e-21 107.5 132 43.2
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 6.7e-15 86.7 66 57.6
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.8e-13 80.5 50 70.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 4.5e-11 73.9 51 68.6
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 4.5e-11 73.9 51 68.6
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.7e-11 73.2 231 31.2
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 3.6e-08 64.3 60 51.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.8e-07 62.0 244 27.0


User provided reference genes

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