Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.9e-248 862.1 441 100.0
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.2e-245 852.8 441 99.1
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-212 742.7 441 85.3
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.5e-149 533.5 374 70.6
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.0e-148 530.8 426 64.1
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 4.2e-147 525.4 442 62.0
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 4.2e-147 525.4 381 69.6
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 9.4e-147 524.2 381 69.3
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.4e-145 520.4 410 64.4
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.8e-145 520.0 395 67.1
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 3.0e-145 519.2 432 62.0
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 3.0e-145 519.2 432 62.0
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 3.0e-145 519.2 377 67.9
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.9e-145 518.8 378 68.0
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.9e-145 518.8 426 62.4
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.2e-145 518.5 427 62.8
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 5.2e-145 518.5 377 69.2
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 5.2e-145 518.5 377 68.4
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 5.2e-145 518.5 377 67.9
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 8.8e-145 517.7 364 71.2
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.1e-144 517.3 400 66.0
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.0e-144 516.5 400 65.5
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.0e-144 516.5 410 63.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 2.6e-144 516.2 374 68.7
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 2.6e-144 516.2 378 67.5
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 2.6e-144 516.2 378 67.7
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.3e-144 515.8 377 67.6
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 3.3e-144 515.8 381 67.2
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 4.4e-144 515.4 377 67.1
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.4e-144 515.4 378 69.0
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.7e-144 515.0 430 62.8
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 5.7e-144 515.0 425 61.6
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.3e-143 513.8 382 66.2
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.7e-143 513.5 377 67.1
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.7e-143 513.5 395 65.3
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 2.2e-143 513.1 377 67.4
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.7e-143 512.3 382 68.3
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 3.7e-143 512.3 377 67.6
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 4.8e-143 511.9 431 62.6
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.8e-143 511.9 378 67.2
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 6.3e-143 511.5 400 65.0
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 6.3e-143 511.5 408 64.0
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 8.2e-143 511.1 377 67.1
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 8.2e-143 511.1 395 65.3
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 8.2e-143 511.1 378 67.5
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 8.2e-143 511.1 378 67.2
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 8.2e-143 511.1 378 66.4
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.4e-142 510.4 377 67.4
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.8e-142 510.0 434 61.5
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.8e-142 510.0 409 62.8
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.4e-142 509.6 410 64.1
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.4e-142 509.6 382 66.5
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.4e-142 509.6 436 60.6
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.4e-142 509.6 374 68.2
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 3.1e-142 509.2 378 66.9
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 3.1e-142 509.2 377 66.6
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 4.1e-142 508.8 377 66.8
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 4.1e-142 508.8 422 62.3
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 4.1e-142 508.8 427 60.4
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 4.1e-142 508.8 379 66.8
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 5.3e-142 508.4 387 66.7
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 5.3e-142 508.4 407 63.6
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 7.0e-142 508.1 374 66.6
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 7.0e-142 508.1 440 59.1
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 7.0e-142 508.1 371 70.4
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.2e-141 507.3 374 66.8
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.2e-141 507.3 361 69.0
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.2e-141 507.3 432 60.9
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.2e-141 507.3 383 66.6
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.6e-141 506.9 394 65.5
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.6e-141 506.9 394 65.5
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 2.0e-141 506.5 395 65.1
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.6e-141 506.1 442 60.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.5e-141 505.8 436 60.1
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 4.5e-141 505.4 395 64.8
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 4.5e-141 505.4 431 60.3
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 4.5e-141 505.4 436 61.7
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 4.5e-141 505.4 408 64.0
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 5.9e-141 505.0 378 66.9
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 5.9e-141 505.0 425 60.7
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 7.7e-141 504.6 377 67.4
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 7.7e-141 504.6 377 67.4
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 7.7e-141 504.6 377 66.3
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.0e-140 504.2 377 67.1
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.0e-140 504.2 377 67.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.0e-140 504.2 399 64.9
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.0e-140 504.2 436 59.9
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.0e-140 504.2 377 66.3
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.0e-140 504.2 377 66.6
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.0e-140 504.2 377 66.8
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.3e-140 503.8 436 60.3
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.3e-140 503.8 384 65.9
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.3e-140 503.8 383 66.3
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 2.9e-140 502.7 395 64.1
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 6.5e-140 501.5 377 66.6
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 6.5e-140 501.5 373 67.8
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.1e-139 500.7 377 66.6
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.1e-139 500.7 391 65.0
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-139 500.0 377 66.6
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.5e-139 499.6 401 63.6
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 2.5e-139 499.6 382 65.2
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 3.2e-139 499.2 377 66.3
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 3.2e-139 499.2 377 66.3
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 4.2e-139 498.8 377 66.3
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 4.2e-139 498.8 395 64.3
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 5.5e-139 498.4 377 66.3
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 5.5e-139 498.4 377 66.3
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 5.5e-139 498.4 377 66.6
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 7.2e-139 498.0 411 61.8
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.2e-138 497.3 374 65.5
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-138 496.5 377 65.8
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.1e-138 496.5 377 65.8
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.1e-138 496.5 374 66.0
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.1e-138 496.5 374 66.0
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 4.7e-138 495.4 380 66.1
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 4.7e-138 495.4 380 65.8
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 6.8e-137 491.5 388 63.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 6.8e-137 491.5 421 61.0
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 5.7e-136 488.4 376 65.2
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.3e-135 485.0 385 64.9
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 3.1e-134 482.6 416 61.1
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.2e-132 476.5 393 63.4
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 4.0e-129 465.7 474 53.6
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.4e-126 457.2 374 63.9
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.5e-125 452.6 397 60.2
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 7.7e-125 451.4 377 61.8
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.3e-123 446.0 359 62.1
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 4.2e-123 445.7 313 70.6
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.5e-120 437.2 370 59.7
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 8.3e-119 431.4 358 58.7
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 5.4e-118 428.7 372 56.7
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 5.4e-118 428.7 397 57.9
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.6e-117 427.2 397 55.4
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.5e-117 425.6 362 57.5
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.7e-116 423.7 303 69.6
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 7.3e-115 418.3 357 56.3
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.8e-114 416.4 358 57.0
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 3.6e-114 416.0 308 66.9
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 6.8e-113 411.8 375 54.9
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.2e-112 411.0 366 59.6
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.9e-111 406.4 359 55.7
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.4e-110 404.1 301 67.1
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.4e-110 403.3 369 54.5
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 2.6e-104 383.3 317 61.5
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 6.6e-76 288.9 304 50.7
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.5e-75 287.7 365 45.2
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.9e-71 272.7 341 46.0
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.9e-70 270.8 215 64.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.5e-56 224.6 185 63.2
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 4.8e-50 203.0 160 62.5
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-47 194.5 135 72.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.5e-43 180.6 189 50.8
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 4.1e-41 173.3 121 65.3
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 2.1e-29 134.4 91 73.6
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.2e-28 129.8 211 38.9
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 2.0e-27 127.9 83 74.7
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 9.7e-27 125.6 80 68.8
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 4.1e-25 120.2 119 49.6
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 2.0e-24 117.9 75 72.0
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.4e-17 95.1 74 58.1
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.2e-16 92.0 76 59.2
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.6e-16 91.7 84 56.0
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 3.6e-13 80.5 51 70.6


User provided reference genes

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