Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.0e-245 852.0 441 100.0
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 8.3e-212 740.3 441 85.3
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.9e-211 739.2 441 85.5
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.8e-153 546.6 425 66.4
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 2.2e-148 529.6 385 69.1
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 2.9e-148 529.3 425 64.7
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.1e-147 527.3 442 62.2
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 5.5e-147 525.0 422 64.5
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.6e-146 523.5 426 64.8
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 2.1e-146 523.1 385 68.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 4.7e-146 521.9 377 69.0
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 6.1e-146 521.5 377 69.0
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.0e-145 520.8 377 68.2
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.8e-145 520.0 424 63.2
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.3e-145 519.6 397 66.2
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 2.3e-145 519.6 377 68.7
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.0e-145 519.2 427 63.0
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 3.0e-145 519.2 378 68.5
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.9e-145 518.8 398 66.6
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.9e-145 518.8 377 68.7
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 5.2e-145 518.5 378 68.8
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 6.7e-145 518.1 420 63.8
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 6.7e-145 518.1 420 63.8
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.7e-145 518.1 377 69.2
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.7e-145 518.1 377 69.2
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 6.7e-145 518.1 402 65.9
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 8.8e-145 517.7 440 62.3
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 8.8e-145 517.7 427 63.0
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 8.8e-145 517.7 440 60.7
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.5e-144 516.9 425 63.1
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.5e-144 516.9 436 60.8
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.5e-144 516.9 430 62.8
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 2.0e-144 516.5 404 64.9
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 2.0e-144 516.5 430 61.9
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.6e-144 516.2 408 66.2
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.6e-144 516.2 364 70.6
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 3.3e-144 515.8 399 66.2
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.3e-144 515.8 404 64.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 4.4e-144 515.4 400 65.2
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 4.4e-144 515.4 377 67.9
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 5.7e-144 515.0 377 67.9
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 5.7e-144 515.0 396 65.7
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 5.7e-144 515.0 430 63.0
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 7.4e-144 514.6 401 65.3
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 7.4e-144 514.6 436 62.6
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.3e-143 513.8 372 68.8
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.7e-143 513.5 431 61.9
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.7e-143 513.5 422 64.7
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 2.2e-143 513.1 377 68.4
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.2e-143 513.1 434 61.8
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 2.2e-143 513.1 396 64.9
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.2e-143 513.1 378 67.7
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.2e-143 513.1 436 62.4
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.2e-143 513.1 378 67.2
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.8e-143 512.7 424 62.7
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 3.7e-143 512.3 379 66.8
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 4.8e-143 511.9 413 63.9
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 4.8e-143 511.9 396 64.9
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 4.8e-143 511.9 431 62.2
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 4.8e-143 511.9 436 62.2
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 6.3e-143 511.5 422 63.0
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 6.3e-143 511.5 377 67.1
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 6.3e-143 511.5 385 66.5
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 6.3e-143 511.5 377 67.6
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 1.1e-142 510.8 371 69.8
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.1e-142 510.8 398 64.1
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.4e-142 510.4 377 67.9
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.4e-142 510.4 429 63.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.4e-142 510.4 377 69.0
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.4e-142 510.4 431 61.3
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.4e-142 510.4 378 67.5
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.4e-142 510.4 384 67.4
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.4e-142 509.6 440 61.4
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.4e-142 509.6 377 67.6
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.1e-142 508.8 429 62.5
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 4.1e-142 508.8 385 66.0
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.3e-142 508.4 430 62.1
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.3e-142 508.4 361 69.3
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 5.3e-142 508.4 433 61.4
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 5.3e-142 508.4 433 61.7
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 5.3e-142 508.4 401 65.1
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 7.0e-142 508.1 430 61.6
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 7.0e-142 508.1 361 69.8
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 7.0e-142 508.1 396 65.2
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 7.0e-142 508.1 436 60.6
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 7.0e-142 508.1 443 60.0
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 9.1e-142 507.7 413 63.7
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 9.1e-142 507.7 413 63.7
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 9.1e-142 507.7 377 66.6
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.2e-141 507.3 360 69.4
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-141 507.3 427 61.1
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.2e-141 507.3 440 60.9
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.6e-141 506.9 361 69.5
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.6e-141 506.9 378 67.2
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.6e-141 506.9 433 61.0
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.0e-141 506.5 377 67.4
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.6e-141 506.1 432 61.6
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.6e-141 506.1 432 61.6
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.6e-141 506.1 431 60.3
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 4.5e-141 505.4 429 61.3
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.9e-141 505.0 436 60.1
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 7.7e-141 504.6 361 69.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.0e-140 504.2 413 62.7
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 2.9e-140 502.7 413 63.0
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 2.9e-140 502.7 413 63.0
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.9e-140 502.7 438 60.3
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.9e-140 502.7 377 66.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 3.8e-140 502.3 413 63.0
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 3.8e-140 502.3 431 61.3
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 5.0e-140 501.9 431 60.1
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-139 500.7 425 60.9
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.1e-139 500.7 425 60.9
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-139 500.0 427 61.8
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.9e-139 500.0 427 61.6
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 3.2e-139 499.2 402 63.4
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 4.2e-139 498.8 361 67.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.2e-138 497.3 411 62.3
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.6e-138 496.9 418 62.4
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.7e-135 486.9 416 61.5
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.8e-135 486.1 377 66.8
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.8e-135 486.1 425 59.8
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.4e-134 483.0 385 65.2
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 2.9e-132 476.1 476 54.4
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 4.4e-128 462.2 397 61.0
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.8e-126 456.8 425 57.6
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 5.0e-124 448.7 331 68.9
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.5e-123 447.2 344 65.4
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 4.0e-121 439.1 397 58.7
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 6.8e-121 438.3 359 61.0
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.7e-119 433.7 375 58.7
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 2.4e-118 429.9 358 58.9
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 4.1e-118 429.1 357 59.4
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.3e-116 423.3 303 69.3
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 2.9e-116 422.9 382 54.7
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.5e-115 420.6 360 61.7
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 9.5e-115 417.9 362 56.9
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.6e-114 417.2 358 57.5
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.6e-114 417.2 303 68.6
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.6e-114 417.2 397 54.4
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.4e-113 414.1 301 69.1
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 4.0e-113 412.5 357 57.1
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 6.8e-113 411.8 359 56.5
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.2e-110 402.9 379 54.4
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 2.8e-106 389.8 317 62.5
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.2e-78 296.2 304 51.6
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.3e-74 284.6 365 45.5
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.8e-73 280.8 340 45.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.8e-68 264.2 215 63.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 6.2e-58 229.2 185 65.4
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.8e-49 201.1 160 63.1
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-48 198.0 135 74.8
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.5e-43 180.6 189 50.8
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.0e-40 171.0 121 63.6
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.7e-29 134.0 211 39.3
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 3.6e-29 133.7 91 73.6
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 3.3e-27 127.1 83 74.7
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 7.5e-27 125.9 119 51.3
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.0e-25 119.4 80 67.5
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 3.8e-23 113.6 75 69.3
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 3.7e-18 97.1 76 63.2
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 5.4e-17 93.2 74 58.1
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.3e-15 88.6 84 56.0
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.2e-11 75.5 51 64.7


User provided reference genes

Program Settings