Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 2.3e-54 215.3 110 100.0
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.3e-30 135.6 111 65.8
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 8.9e-30 133.7 102 67.6
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 2.2e-28 129.0 116 60.3
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 4.9e-28 127.9 107 63.6
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.9e-28 127.9 103 63.1
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 4.9e-28 127.9 103 63.1
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 8.3e-28 127.1 111 60.4
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 8.3e-28 127.1 103 63.1
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 8.3e-28 127.1 103 63.1
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.1e-27 126.7 102 62.7
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.1e-27 126.7 103 63.1
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.9e-27 125.9 107 61.7
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.9e-27 125.9 116 58.6
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.9e-27 125.9 116 59.5
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 3.2e-27 125.2 103 61.2
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 4.1e-27 124.8 118 58.5
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.1e-27 124.8 103 62.1
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 4.1e-27 124.8 106 61.3
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 5.4e-27 124.4 116 58.6
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 5.4e-27 124.4 107 61.7
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 5.4e-27 124.4 103 62.1
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 5.4e-27 124.4 111 61.3
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 7.1e-27 124.0 107 62.6
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 7.1e-27 124.0 105 62.9
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 7.1e-27 124.0 103 61.2
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 7.1e-27 124.0 103 62.1
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 9.2e-27 123.6 107 61.7
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 9.2e-27 123.6 107 61.7
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 9.2e-27 123.6 107 61.7
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 9.2e-27 123.6 107 61.7
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 9.2e-27 123.6 103 64.1
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 9.2e-27 123.6 103 64.1
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 9.2e-27 123.6 116 59.5
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.2e-26 123.2 107 59.8
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.2e-26 123.2 107 61.7
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.2e-26 123.2 107 59.8
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.6e-26 122.9 107 61.7
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.6e-26 122.9 111 60.4
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.6e-26 122.9 103 61.2
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.6e-26 122.9 103 58.3
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 2.1e-26 122.5 107 61.7
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 2.7e-26 122.1 106 62.3
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 2.7e-26 122.1 106 62.3
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.7e-26 122.1 111 59.5
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.7e-26 122.1 111 59.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.7e-26 122.1 107 59.8
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.7e-26 122.1 107 59.8
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 2.7e-26 122.1 103 60.2
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 3.5e-26 121.7 107 59.8
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 3.5e-26 121.7 106 62.3
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 3.5e-26 121.7 106 61.3
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 3.5e-26 121.7 106 61.3
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 3.5e-26 121.7 107 58.9
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 3.5e-26 121.7 111 60.4
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.5e-26 121.7 97 64.9
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.5e-26 121.7 103 60.2
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.6e-26 121.3 107 58.9
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 4.6e-26 121.3 107 59.8
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.6e-26 121.3 101 62.4
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 4.6e-26 121.3 103 60.2
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 6.0e-26 120.9 116 56.9
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.0e-26 120.9 110 57.3
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 6.0e-26 120.9 103 60.2
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 6.0e-26 120.9 103 61.2
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 6.0e-26 120.9 101 62.4
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 7.8e-26 120.6 107 58.9
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 7.8e-26 120.6 106 61.3
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 7.8e-26 120.6 106 61.3
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 7.8e-26 120.6 96 65.6
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 7.8e-26 120.6 107 60.7
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 1.0e-25 120.2 116 56.0
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.7e-25 119.4 111 59.5
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.7e-25 119.4 109 61.5
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 3.9e-25 118.2 106 60.4
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 3.9e-25 118.2 111 57.7
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 6.6e-25 117.5 111 57.7
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 8.6e-25 117.1 109 60.6
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-24 116.7 101 60.4
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.1e-24 116.7 106 57.5
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.1e-24 116.7 107 57.9
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.5e-24 115.5 100 57.0
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.5e-24 115.5 100 57.0
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.5e-24 115.5 100 60.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.5e-24 115.5 100 60.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.5e-24 115.5 100 60.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.5e-24 115.5 100 60.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 3.3e-24 115.2 111 55.9
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 4.3e-24 114.8 107 58.9
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 5.6e-24 114.4 107 57.9
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 9.5e-24 113.6 100 59.0
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 9.5e-24 113.6 106 56.6
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.2e-23 113.2 103 57.3
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 2.1e-23 112.5 103 57.3
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 2.1e-23 112.5 107 56.1
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 2.8e-23 112.1 100 56.0
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 4.7e-23 111.3 103 57.3
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 4.7e-23 111.3 103 56.3
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 8.1e-23 110.5 103 56.3
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.1e-22 110.2 100 56.0
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.4e-22 109.8 97 57.7
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 5.2e-22 107.8 103 56.3
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.0e-21 105.9 113 53.1
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.0e-21 105.9 103 53.4
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.0e-21 105.9 103 53.4
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.0e-21 105.9 103 53.4
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.0e-21 105.9 103 53.4
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.0e-21 105.9 103 53.4
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.6e-21 105.5 121 49.6
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.6e-21 105.5 103 53.4
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 4.4e-21 104.8 102 53.9
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 5.8e-21 104.4 98 54.1
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.8e-21 104.4 112 51.8
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 7.6e-21 104.0 102 52.9
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 9.9e-21 103.6 117 50.4
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 2.2e-20 102.4 120 49.2
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 2.9e-20 102.1 102 53.9
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.1e-19 100.1 96 58.3
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.4e-19 99.8 96 54.2
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.9e-19 99.4 111 52.3
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 5.4e-19 97.8 96 57.3
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 2.1e-18 95.9 103 49.5
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 6.0e-18 94.4 88 59.1
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.3e-17 92.4 77 66.2
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 3.0e-17 92.0 88 55.7
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-17 92.0 85 56.5
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 4.3e-16 88.2 100 47.0
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 2.8e-15 85.5 116 45.7
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 6.2e-15 84.3 64 64.1
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.5e-13 79.7 71 59.2
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 7.6e-13 77.4 81 54.3
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 7.6e-13 77.4 81 54.3
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 4.9e-12 74.7 69 55.1
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.4e-12 74.3 58 63.8
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.9e-11 72.8 67 55.2
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 5.4e-11 71.2 67 55.2
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.2e-10 70.1 67 55.2
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.2e-10 70.1 69 50.7
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 3.5e-10 68.6 100 42.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 1.7e-09 66.2 123 35.8
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 9.6e-08 60.5 76 42.1
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 9.6e-08 60.5 73 45.2
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.8e-07 58.2 57 50.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 3.1e-06 55.5 85 41.2


User provided reference genes

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