Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0092s0031 Marchantia polymorpha HOM05D004756 ORTHO05D005793 3.9e-102 374.8 188 100.0
Mapoly0092s0030 Marchantia polymorpha HOM05D004756 ORTHO05D005793 2.0e-93 345.9 209 88.0
Mapoly0069s0027 Marchantia polymorpha HOM05D004756 ORTHO05D005793 3.2e-88 328.6 209 84.2
Pp3c9_23730 Physcomitrium patens HOM05D004756 ORTHO05D005793 1.5e-29 133.7 215 42.8
SEGI_24335 Sequoiadendron giganteum HOM05D004756 ORTHO05D005793 1.1e-22 110.9 216 38.4
CBR_g39523 Chara braunii HOM05D004756 ORTHO05D005793 1.5e-21 107.1 112 52.7
Nn2g12710 Nelumbo nucifera HOM05D004756 ORTHO05D005793 5.8e-21 105.1 115 52.2
CsaV3_1G045570 Cucumis sativus L. HOM05D004756 ORTHO05D005793 2.2e-20 103.2 211 37.9
TAR636G3098 Trochodendron aralioides HOM05D004756 ORTHO05D005793 2.2e-20 103.2 115 49.6
CDE06G0731 Ceratophyllum demersum HOM05D004756 ORTHO05D005793 2.9e-20 102.8 145 43.4
ATR0665G165 Amborella trichopoda HOM05D004756 ORTHO05D005793 3.8e-20 102.4 205 36.6
MELO3C024666.2 Cucumis melo HOM05D004756 ORTHO05D005793 4.9e-20 102.1 211 37.4
Os02g0219400 Oryza sativa ssp. japonica HOM05D004756 ORTHO05D005793 6.4e-20 101.7 202 36.1
SMO356G0549 Selaginella moellendorffii HOM05D004756 ORTHO05D005793 8.4e-20 101.3 114 49.1
AT1G08750 Arabidopsis thaliana HOM05D004756 ORTHO05D005793 1.1e-19 100.9 207 36.7
Lalb_Chr08g0234301 Lupinus albus HOM05D004756 ORTHO05D005793 1.9e-19 100.1 121 46.3
ClCG06G009440 Citrullus lanatus HOM05D004756 ORTHO05D005793 2.4e-19 99.8 207 37.2
CANSAT54G2478 Cannabis sativa HOM05D004756 ORTHO05D005793 3.2e-19 99.4 115 50.4
Lj7A537T48 Lonicera japonica HOM05D004756 ORTHO05D005793 3.2e-19 99.4 120 48.3
EL10Ac9g21026 Beta vulgaris HOM05D004756 ORTHO05D005793 4.2e-19 99.0 120 47.5
AUR62024000 Chenopodium quinoa HOM05D004756 ORTHO05D005793 7.1e-19 98.2 120 47.5
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 7.1e-19 98.2 120 47.5
Ciclev10020741m.g Citrus clementina HOM05D004756 ORTHO05D005793 7.1e-19 98.2 115 49.6
Cc05_g09050 Coffea canephora HOM05D004756 ORTHO05D005793 7.1e-19 98.2 115 49.6
Gohir.A11G250480 Gossypium hirsutum HOM05D004756 ORTHO05D005793 7.1e-19 98.2 170 41.8
Ciclev10020437m.g Citrus clementina HOM05D004756 ORTHO05D005793 9.3e-19 97.8 115 49.6
AL1G19180 Arabidopsis lyrata HOM05D004756 ORTHO05D005793 1.2e-18 97.4 148 41.9
CSS0029039 Camellia sinensis var. sinensis HOM05D004756 ORTHO05D005793 1.2e-18 97.4 115 50.4
CAN.G577.1 Capsicum annuum HOM05D004756 ORTHO05D005793 1.2e-18 97.4 120 46.7
CDE07G1473 Ceratophyllum demersum HOM05D004756 ORTHO05D005793 1.2e-18 97.4 114 49.1
Dinv06277 Davidia involucrata HOM05D004756 ORTHO05D005793 1.2e-18 97.4 115 48.7
Medtr2g058550 Medicago truncatula HOM05D004756 ORTHO05D005793 1.2e-18 97.4 115 49.6
TWI56G0480 Tripterygium wilfordii HOM05D004756 ORTHO05D005793 1.2e-18 97.4 115 48.7
Hund00823 Selenicereus undatus HOM05D004756 ORTHO05D005793 1.6e-18 97.1 164 40.9
HPP92_018816 Vanilla planifolia HOM05D004756 ORTHO05D005793 1.6e-18 97.1 118 48.3
Manes.07G069500 Manihot esculenta HOM05D004756 ORTHO05D005793 2.1e-18 96.7 119 47.1
PGR142G3409 Punica granatum HOM05D004756 ORTHO05D005793 2.1e-18 96.7 112 50.0
Actinidia12823 Actinidia chinensis HOM05D000054 ORTHO05D005793 2.7e-18 96.3 115 49.6
Ciclev10021087m.g Citrus clementina HOM05D004756 ORTHO05D005793 2.7e-18 96.3 115 49.6
Gohir.A11G250600 Gossypium hirsutum HOM05D004756 ORTHO05D005793 2.7e-18 96.3 170 41.8
Gorai.007G279800 Gossypium raimondii HOM05D004756 ORTHO05D005793 2.7e-18 96.3 170 42.4
PSO528G0135 Papaver somniferum HOM05D004756 ORTHO05D005793 2.7e-18 96.3 115 49.6
Atru.chr2.885 Acer truncatum HOM05D004756 ORTHO05D005793 3.5e-18 95.9 136 43.4
CAN.G449.74 Capsicum annuum HOM05D004756 ORTHO05D005793 3.5e-18 95.9 120 45.8
Ciclev10024315m.g Citrus clementina HOM05D004756 ORTHO05D005793 3.5e-18 95.9 112 50.0
Sabra19G0016400 Salix brachista HOM05D004756 ORTHO05D005793 3.5e-18 95.9 115 47.8
TPR.G15315 Trifolium pratense HOM05D004756 ORTHO05D005793 3.5e-18 95.9 115 48.7
Carub.0001s0809 Capsella rubella HOM05D004756 ORTHO05D005793 4.6e-18 95.5 206 37.9
CiPaw.07G070600 Carya illinoinensis HOM05D004756 ORTHO05D005793 4.6e-18 95.5 163 38.7
Eucgr.H00259 Eucalyptus grandis HOM05D004756 ORTHO05D005793 4.6e-18 95.5 117 47.0
QL03p029131 Quercus lobata HOM05D004756 ORTHO05D005793 4.6e-18 95.5 209 35.4
SGA_v2.0_scaffold130G34203 Striga asiatica HOM05D004756 ORTHO05D005793 4.6e-18 95.5 120 46.7
GSVIVG01036218001 Vitis vinifera HOM05D004756 ORTHO05D005793 4.6e-18 95.5 115 48.7
AagrBONN_evm.TU.Sc2ySwM_228.4219 Anthoceros agrestis HOM05D004756 ORTHO05D005793 6.0e-18 95.1 156 41.0
Cfa006386 Carpinus fangiana HOM05D004756 ORTHO05D005793 6.0e-18 95.1 115 48.7
Ca_02704_v3 Cicer arietinum L. HOM05D004756 ORTHO05D005793 6.0e-18 95.1 120 47.5
COL.COLO4_15415 Corchorus olitorius HOM05D004756 ORTHO05D005793 6.0e-18 95.1 112 50.0
Haze_04391 Corylus avellana HOM05D004756 ORTHO05D005793 6.0e-18 95.1 115 48.7
Migut.M00214 Erythranthe guttata HOM05D004756 ORTHO05D005793 6.0e-18 95.1 114 49.1
Lj6g0025011 Lotus japonicus HOM05D004756 ORTHO05D005793 6.0e-18 95.1 115 48.7
Phvul.011G079900 Phaseolus vulgaris HOM05D004756 ORTHO05D005793 6.0e-18 95.1 115 47.8
Prupe.6G347300 Prunus persica HOM05D004756 ORTHO05D005793 6.0e-18 95.1 115 48.7
PGSC0003DMG400021238 Solanum tuberosum HOM05D004756 ORTHO05D005793 6.0e-18 95.1 120 45.8
MSTRG.15061 Avicennia marina HOM05D004756 ORTHO05D005793 7.8e-18 94.7 120 46.7
BcaB03g13316 Brassica carinata HOM05D004756 ORTHO05D005793 7.8e-18 94.7 120 47.5
Duzib128G2034 Durio zibethinus HOM05D004756 ORTHO05D005793 7.8e-18 94.7 115 48.7
MD04G1227700 Malus domestica HOM05D004756 ORTHO05D005793 7.8e-18 94.7 169 38.5
Sabra19G0026700 Salix brachista HOM05D004756 ORTHO05D005793 7.8e-18 94.7 115 47.0
Solyc10g007850.3 Solanum lycopersicum HOM05D004756 ORTHO05D005793 7.8e-18 94.7 120 45.8
Sopen10g003750 Solanum pennellii HOM05D004756 ORTHO05D005793 7.8e-18 94.7 120 45.8
Eucgr.L01375 Eucalyptus grandis HOM05D004756 ORTHO05D005793 1.0e-17 94.4 114 47.4
Psat0s4043g0080 Pisum sativum HOM05D004756 ORTHO05D005793 1.0e-17 94.4 115 47.8
Potri.019G014000 Populus trichocarpa HOM05D004756 ORTHO05D005793 1.0e-17 94.4 115 47.8
Sed0000709 Sechium edule HOM05D004756 ORTHO05D005793 1.0e-17 94.4 115 47.8
Sed0006035 Sechium edule HOM05D004756 ORTHO05D005793 1.3e-17 94.0 206 33.5
Sed0007432 Sechium edule HOM05D004756 ORTHO05D005793 1.3e-17 94.0 206 33.5
Sed0019802 Sechium edule HOM05D004756 ORTHO05D005793 1.3e-17 94.0 206 33.5
Sed0025298 Sechium edule HOM05D004756 ORTHO05D005793 1.3e-17 94.0 206 33.5
THA.LOC104808029 Tarenaya hassleriana HOM05D004756 ORTHO05D005793 1.7e-17 93.6 120 45.8
VMungo1127G1235 Vigna mungo HOM05D000724 ORTHO05D000755 1.7e-17 93.6 115 47.0
Ah.15g093660 Amaranthus hybridus HOM05D004756 ORTHO05D005793 2.3e-17 93.2 120 46.7
CARHR008670 Cardamine hirsuta HOM05D004756 ORTHO05D005793 2.3e-17 93.2 156 39.7
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.3e-17 93.2 115 47.0
FvH4_5g04770 Fragaria vesca HOM05D004756 ORTHO05D005793 3.0e-17 92.8 115 47.0
FAN04G1391 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.0e-17 92.8 115 47.0
FAN08G1019 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.0e-17 92.8 115 47.0
FAN09G0888 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.0e-17 92.8 115 47.0
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 3.0e-17 92.8 115 47.0
Oeu011324.1 Olea europaea HOM05D004756 ORTHO05D005793 3.0e-17 92.8 120 45.8
Sc21g0004350 Simmondsia chinensis HOM05D004756 ORTHO05D005793 3.0e-17 92.8 155 40.0
BcaNung06265 Brassica carinata HOM05D000200 ORTHO05D005793 3.9e-17 92.4 120 45.8
A06p05660 Brassica napus HOM05D004756 ORTHO05D005793 3.9e-17 92.4 120 45.8
C05p06830 Brassica napus HOM05D004756 ORTHO05D005793 3.9e-17 92.4 120 45.8
Glyma.04G156000 Glycine max HOM05D004756 ORTHO05D005793 3.9e-17 92.4 115 47.0
HanXRQChr01g0015131 Helianthus annuus HOM05D004756 ORTHO05D005793 3.9e-17 92.4 203 34.5
PSO170G6485 Papaver somniferum HOM05D004756 ORTHO05D005793 3.9e-17 92.4 115 47.8
Thecc.05G277000 Theobroma cacao HOM05D004756 ORTHO05D005793 3.9e-17 92.4 115 47.8
Thhalv10007907m.g Eutrema salsugineum HOM05D004756 ORTHO05D005793 5.1e-17 92.0 211 34.1
FvH4_6g02380 Fragaria vesca HOM05D004756 ORTHO05D005793 5.1e-17 92.0 164 37.2
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 5.1e-17 92.0 115 47.0
RcHm_v2.0_Chr3g0450151 Rosa chinensis HOM05D004756 ORTHO05D005793 5.1e-17 92.0 115 47.0
Aa31LG8G10570 Aethionema arabicum HOM05D004756 ORTHO05D005793 6.6e-17 91.7 135 43.0
Glyma.06G217200 Glycine max HOM05D004756 ORTHO05D005793 6.6e-17 91.7 115 47.0
Sp1g07390 Schrenkiella parvula HOM05D004756 ORTHO05D005793 6.6e-17 91.7 155 41.3
Lsat_1_v5_gn_5_179521 Lactuca sativa HOM05D004756 ORTHO05D005793 1.1e-16 90.9 115 47.0
ECA248G2407 Erigeron canadensis HOM05D004756 ORTHO05D005793 1.9e-16 90.1 112 46.4
A09p65770 Brassica napus HOM05D000239 ORTHO05D001037 2.5e-16 89.7 143 42.7
unitig_62.g23111 Utricularia gibba HOM05D004756 ORTHO05D005793 2.5e-16 89.7 114 47.4
FAN05G2727 Fragaria x ananassa HOM05D004756 ORTHO05D005793 7.3e-16 88.2 115 46.1
BraA09t41921Z Brassica rapa HOM05D000239 ORTHO05D000484 1.6e-15 87.0 146 42.5
BolC5t29441H Brassica oleracea HOM05D004756 ORTHO05D005793 3.6e-15 85.9 123 43.9
BraA06t23775Z Brassica rapa HOM05D004756 ORTHO05D005793 3.6e-15 85.9 123 43.9
Oeu032125.1 Olea europaea HOM05D004756 ORTHO05D005793 3.6e-15 85.9 102 43.1
Rhsim06G0122800 Rhododendron simsii HOM05D004756 ORTHO05D005793 3.6e-15 85.9 142 40.8
FAN13G2410 Fragaria x ananassa HOM05D004756 ORTHO05D005793 6.2e-15 85.1 122 44.3
FAN02G1286 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.4e-14 84.0 124 42.7
Zm00001eb205610 Zea mays HOM05D004756 ORTHO05D005793 2.0e-13 80.1 97 49.5
C08p49840 Brassica napus HOM05D000239 ORTHO05D000484 4.5e-13 79.0 125 41.6
vmacro12429 Vaccinium macrocarpon HOM05D004756 ORTHO05D005793 2.9e-12 76.3 71 54.9
arahy.Tifrunner.gnm1.ann1.2YXN00 Arachis hypogaea HOM05D004756 ORTHO05D005793 1.4e-11 73.9 96 46.9
arahy.Tifrunner.gnm1.ann1.N732CA Arachis hypogaea HOM05D004756 ORTHO05D005793 3.2e-11 72.8 96 45.8
Cre03.g153800 Chlamydomonas reinhardtii HOM05D004756 ORTHO05D005793 5.4e-11 72.0 175 33.1
Nitab4.5_0002027g0100 Nicotiana tabacum HOM05D004756 ORTHO05D005793 7.9e-10 68.2 156 32.1
Aqoxy2G03592 Aquilegia oxysepala HOM05D004756 ORTHO05D005793 4.3e-08 62.4 223 26.9
Actinidia11184 Actinidia chinensis HOM05D004756 ORTHO05D005793 1.6e-07 60.5 141 34.8
Lj7A536T7 Lonicera japonica HOM05D004756 ORTHO05D005793 6.2e-07 58.5 120 36.7
Lsat_1_v5_gn_8_53341 Lactuca sativa HOM05D004756 ORTHO05D005793 1.4e-06 57.4 53 50.9


User provided reference genes

Program Settings