Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 5.6e-153 544.3 281 100.0
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 1.2e-51 207.6 284 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 8.6e-45 184.9 252 44.0
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 7.5e-41 171.8 159 52.8
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.9e-40 169.9 156 52.6
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 3.3e-36 156.4 165 50.3
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 3.1e-34 149.8 194 43.8
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 1.2e-33 147.9 185 45.9
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 5.8e-33 145.6 239 40.2
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 7.6e-33 145.2 231 39.8
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 9.9e-33 144.8 164 47.0
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 3.8e-32 142.9 216 39.8
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 6.4e-32 142.1 161 46.6
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 8.4e-32 141.7 159 46.5
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 8.4e-32 141.7 161 45.3
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.4e-31 141.0 229 39.3
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 1.9e-31 140.6 236 37.3
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 1.9e-31 140.6 196 41.8
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 2.4e-31 140.2 154 48.1
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 3.2e-31 139.8 156 48.7
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 3.2e-31 139.8 156 46.8
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 5.4e-31 139.0 174 46.0
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 5.4e-31 139.0 156 46.8
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 5.4e-31 139.0 188 42.0
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 5.4e-31 139.0 156 48.1
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 5.4e-31 139.0 157 46.5
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 5.4e-31 139.0 154 48.1
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 7.1e-31 138.7 156 48.7
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 7.1e-31 138.7 156 48.1
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 7.1e-31 138.7 156 47.4
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 9.2e-31 138.3 156 47.4
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 9.2e-31 138.3 158 46.2
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 1.2e-30 137.9 174 45.4
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.2e-30 137.9 154 48.7
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 1.2e-30 137.9 187 41.7
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 1.2e-30 137.9 156 48.7
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.2e-30 137.9 159 45.9
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 1.6e-30 137.5 156 48.1
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 1.6e-30 137.5 190 40.5
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 1.6e-30 137.5 188 43.6
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 2.1e-30 137.1 160 46.2
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.1e-30 137.1 156 46.2
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 2.7e-30 136.7 160 45.6
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.5e-30 136.3 155 47.1
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 3.5e-30 136.3 157 46.5
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 4.6e-30 136.0 160 45.6
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 4.6e-30 136.0 156 46.8
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 4.6e-30 136.0 157 45.9
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 4.6e-30 136.0 202 39.1
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 6.0e-30 135.6 221 38.0
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 6.0e-30 135.6 156 45.5
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 6.0e-30 135.6 187 41.2
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 7.8e-30 135.2 156 47.4
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 7.8e-30 135.2 197 40.6
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 7.8e-30 135.2 151 48.3
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 1.0e-29 134.8 175 44.6
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 1.0e-29 134.8 156 46.8
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.0e-29 134.8 156 47.4
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 1.0e-29 134.8 157 43.9
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.3e-29 134.4 156 46.8
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.3e-29 134.4 156 46.2
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.3e-29 134.4 156 46.8
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.3e-29 134.4 187 40.6
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 1.3e-29 134.4 156 46.8
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 1.3e-29 134.4 202 40.1
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.7e-29 134.0 156 45.5
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 1.7e-29 134.0 156 44.9
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.7e-29 134.0 156 46.2
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.3e-29 133.7 160 45.0
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 2.3e-29 133.7 159 44.7
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 3.0e-29 133.3 156 45.5
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 3.9e-29 132.9 243 38.3
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 3.9e-29 132.9 156 45.5
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 5.1e-29 132.5 164 44.5
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 6.6e-29 132.1 160 45.0
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 6.6e-29 132.1 217 37.3
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 6.6e-29 132.1 183 40.4
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.6e-29 132.1 171 43.3
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 8.7e-29 131.7 156 45.5
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 8.7e-29 131.7 156 44.2
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 8.7e-29 131.7 156 44.9
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 1.1e-28 131.3 161 45.3
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 1.5e-28 131.0 156 45.5
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 1.5e-28 131.0 188 40.4
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.9e-28 130.6 156 44.9
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 2.5e-28 130.2 154 44.2
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 2.5e-28 130.2 162 39.5
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 3.3e-28 129.8 156 45.5
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 5.6e-28 129.0 182 42.3
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 5.6e-28 129.0 156 45.5
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 9.6e-28 128.3 154 44.8
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 1.6e-27 127.5 153 45.1
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.1e-27 127.1 171 42.7
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 2.1e-27 127.1 151 44.4
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 3.6e-27 126.3 156 44.9
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 6.2e-27 125.6 173 42.8
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 1.1e-26 124.8 156 44.2
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 1.8e-26 124.0 153 44.4
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.8e-26 124.0 173 42.2
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 5.8e-25 119.0 156 42.9
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 9.9e-25 118.2 151 41.7
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 6.4e-24 115.5 160 43.8
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 1.1e-23 114.8 155 41.9
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.9e-23 114.0 160 43.1
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 4.2e-23 112.8 148 39.2
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 5.4e-23 112.5 116 53.4
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 7.1e-23 112.1 150 44.7
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 7.1e-23 112.1 187 35.8
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 2.7e-22 110.2 134 44.8
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 1.1e-18 98.2 186 35.5
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.8e-18 97.4 157 39.5
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 5.3e-18 95.9 89 51.7
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.3e-16 91.3 156 39.1
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 2.9e-16 90.1 79 54.4
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 1.1e-15 88.2 73 54.8
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 3.5e-14 83.2 183 31.7
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 1.8e-13 80.9 75 50.7
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 5.1e-13 79.3 75 50.7
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 8.7e-13 78.6 75 50.7
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 4.3e-12 76.3 68 50.0
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 4.3e-12 76.3 123 42.3
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 5.8e-09 65.9 73 49.3
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.9e-07 60.8 62 48.4
RcHm_v2.0_Chr1g0365751 Rosa chinensis HOM05D002933 ORTHO05D007742 3.2e-07 60.1 153 27.5
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.2e-06 58.2 85 40.0
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.2e-06 58.2 85 38.8
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 4.6e-06 56.2 149 28.2
DCAR_015210 Daucus carota HOM05D002933 ORTHO05D009221 7.9e-06 55.5 176 24.4
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 7.9e-06 55.5 191 24.6


User provided reference genes

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