Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.8e-196 689.1 362 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 9.4e-28 128.6 222 37.4
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 5.7e-25 119.4 359 31.2
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.7e-22 110.5 217 38.2
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 8.6e-21 105.5 138 43.5
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 8.6e-21 105.5 345 31.3
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.2e-19 101.7 206 39.3
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 1.6e-19 101.3 114 50.9
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 2.8e-19 100.5 207 40.1
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 2.8e-19 100.5 207 40.1
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 3.6e-19 100.1 206 39.3
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.0e-18 98.6 290 32.8
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.4e-18 98.2 207 39.6
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.3e-18 97.4 206 39.3
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 2.3e-18 97.4 212 38.2
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 2.3e-18 97.4 213 36.6
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 3.0e-18 97.1 206 37.4
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 3.0e-18 97.1 211 37.9
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 4.0e-18 96.7 183 39.3
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 4.0e-18 96.7 213 36.2
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.2e-18 96.3 211 37.9
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 6.8e-18 95.9 183 38.3
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 6.8e-18 95.9 207 38.2
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.2e-17 95.1 207 38.2
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.5e-17 94.7 155 38.7
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.5e-17 94.7 232 37.5
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.5e-17 94.7 220 34.5
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.0e-17 94.4 219 36.1
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.0e-17 94.4 206 40.3
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 2.6e-17 94.0 211 35.5
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 2.6e-17 94.0 114 45.6
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 4.4e-17 93.2 92 53.3
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 5.7e-17 92.8 232 30.2
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 5.7e-17 92.8 109 48.6
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 5.7e-17 92.8 171 38.6
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 7.5e-17 92.4 286 32.9
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.3e-16 91.7 208 37.5
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.3e-16 91.7 211 35.1
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.3e-16 91.7 221 36.7
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.3e-16 91.7 123 44.7
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 2.2e-16 90.9 126 42.9
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 2.2e-16 90.9 96 49.0
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.2e-16 90.9 172 38.4
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 2.2e-16 90.9 90 56.7
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 2.8e-16 90.5 231 33.3
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 3.7e-16 90.1 222 34.2
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.7e-16 90.1 87 54.0
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.7e-16 90.1 208 37.0
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.9e-16 89.7 206 35.4
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 6.3e-16 89.4 177 34.5
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 8.3e-16 89.0 201 37.3
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.8e-15 87.8 206 35.4
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.8e-15 87.8 90 52.2
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.4e-15 87.4 103 46.6
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.4e-15 87.4 212 36.8
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 3.1e-15 87.0 208 35.6
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 4.1e-15 86.7 87 50.6
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 4.1e-15 86.7 228 32.9
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.1e-15 86.7 208 37.0
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 4.1e-15 86.7 214 34.1
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.1e-15 86.7 197 39.6
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 4.1e-15 86.7 276 30.4
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 5.4e-15 86.3 206 37.4
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 7.0e-15 85.9 206 34.0
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 7.0e-15 85.9 248 32.7
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 7.0e-15 85.9 229 31.9
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 7.0e-15 85.9 229 31.9
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 9.2e-15 85.5 90 51.1
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.2e-14 85.1 229 35.8
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.2e-14 85.1 102 44.1
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.2e-14 85.1 213 34.3
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.6e-14 84.7 206 36.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.6e-14 84.7 211 31.8
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.6e-14 84.7 225 31.6
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.6e-14 84.7 216 34.3
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.6e-14 84.7 206 33.5
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 2.0e-14 84.3 215 35.3
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.0e-14 84.3 226 32.3
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.7e-14 84.0 183 35.5
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 3.5e-14 83.6 344 29.4
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 3.5e-14 83.6 185 35.7
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 4.5e-14 83.2 212 34.0
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.5e-14 83.2 198 38.4
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 5.9e-14 82.8 217 31.8
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 5.9e-14 82.8 87 49.4
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 7.8e-14 82.4 182 38.5
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.0e-13 82.0 86 48.8
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.3e-13 81.6 175 33.7
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.7e-13 81.3 211 35.1
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.7e-13 81.3 87 47.1
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.3e-13 80.9 206 29.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.3e-13 80.9 227 31.3
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 2.3e-13 80.9 175 35.4
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 2.3e-13 80.9 216 32.4
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.9e-13 80.5 210 33.8
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 3.8e-13 80.1 83 50.6
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 3.8e-13 80.1 182 34.6
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.0e-13 79.7 222 32.4
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 5.0e-13 79.7 174 39.1
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 6.6e-13 79.3 210 32.9
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 6.6e-13 79.3 110 43.6
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.1e-12 78.6 233 30.5
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.1e-12 78.6 273 28.2
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.1e-12 78.6 161 36.0
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.5e-12 78.2 162 35.2
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.5e-12 78.2 212 33.0
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.9e-12 77.8 168 35.1
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.9e-12 77.8 282 28.4
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.9e-12 77.8 216 32.9
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.5e-12 77.4 222 32.0
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 2.5e-12 77.4 207 33.8
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 2.5e-12 77.4 198 35.4
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 5.6e-12 76.3 278 28.8
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 7.3e-12 75.9 178 34.8
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.6e-11 73.6 198 34.3
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.0e-10 72.0 246 28.5
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.0e-10 72.0 186 34.4
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.8e-10 71.2 209 32.1
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.8e-10 71.2 228 31.1
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.3e-10 70.9 202 33.2
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 5.2e-10 69.7 123 36.6
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 5.2e-10 69.7 220 30.9
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.5e-09 68.2 159 32.7
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.4e-09 67.0 246 30.1
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 5.8e-09 66.2 227 28.6
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 9.8e-09 65.5 179 33.0
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 9.8e-09 65.5 106 36.8
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.2e-08 64.3 63 47.6
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 4.1e-07 60.1 71 43.7
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.6e-06 58.2 171 26.9
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.6e-06 58.2 51 52.9
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.6e-06 58.2 173 28.9
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.0e-06 57.8 71 49.3


User provided reference genes

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