Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 5.4e-47 190.7 96 100.0
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 1.5e-17 92.8 87 57.5
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 4.3e-12 74.7 60 60.0
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 2.8e-11 72.0 63 50.8
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 8.1e-11 70.5 81 53.1
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 8.1e-11 70.5 81 53.1
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 8.9e-10 67.0 74 51.4
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 1.5e-09 66.2 49 65.3
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 4.4e-09 64.7 61 57.4
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 4.4e-09 64.7 61 57.4
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 4.4e-09 64.7 61 57.4
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 4.4e-09 64.7 61 57.4
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 4.4e-09 64.7 61 57.4
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 4.4e-09 64.7 61 57.4
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 4.4e-09 64.7 61 57.4
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 4.4e-09 64.7 64 53.1
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 4.4e-09 64.7 61 57.4
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 5.8e-09 64.3 61 57.4
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 5.8e-09 64.3 66 54.5
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 7.6e-09 63.9 60 60.0
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 9.9e-09 63.5 49 61.2
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 9.9e-09 63.5 59 54.2
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 9.9e-09 63.5 61 57.4
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 9.9e-09 63.5 61 57.4
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 9.9e-09 63.5 61 57.4
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 9.9e-09 63.5 82 48.8
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 1.7e-08 62.8 61 55.7
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 1.7e-08 62.8 68 52.9
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 2.2e-08 62.4 60 56.7
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 2.2e-08 62.4 46 65.2
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.2e-08 62.4 66 53.0
SMO367G0828 Selaginella moellendorffii HOM05D006906 ORTHO05D008578 2.2e-08 62.4 46 65.2
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 2.2e-08 62.4 55 56.4
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 2.9e-08 62.0 82 43.9
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 2.9e-08 62.0 47 63.8
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 2.9e-08 62.0 47 63.8
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 2.9e-08 62.0 54 59.3
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 2.9e-08 62.0 48 58.3
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 3.8e-08 61.6 60 51.7
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 3.8e-08 61.6 61 54.1
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 3.8e-08 61.6 47 63.8
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 4.9e-08 61.2 84 47.6
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 6.4e-08 60.8 47 63.8
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 8.4e-08 60.5 49 61.2
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 8.4e-08 60.5 66 50.0
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 8.4e-08 60.5 63 54.0
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 8.4e-08 60.5 39 69.2
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 8.4e-08 60.5 39 69.2
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 1.1e-07 60.1 88 44.3
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 1.1e-07 60.1 61 54.1
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 1.1e-07 60.1 45 66.7
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 1.4e-07 59.7 93 44.1
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 1.4e-07 59.7 62 50.0
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 1.4e-07 59.7 85 42.4
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 1.4e-07 59.7 55 58.2
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 1.4e-07 59.7 63 50.8
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 1.9e-07 59.3 61 54.1
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 1.9e-07 59.3 47 61.7
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 1.9e-07 59.3 47 61.7
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 1.9e-07 59.3 55 54.5
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 1.9e-07 59.3 78 46.2
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 1.9e-07 59.3 85 44.7
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 2.4e-07 58.9 60 53.3
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 2.4e-07 58.9 55 52.7
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 2.4e-07 58.9 37 70.3
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 3.2e-07 58.5 47 59.6
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 4.2e-07 58.2 61 52.5
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 4.2e-07 58.2 47 59.6
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 4.2e-07 58.2 46 60.9
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 5.4e-07 57.8 78 47.4
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 5.4e-07 57.8 46 63.0
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 5.4e-07 57.8 85 42.4
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 7.1e-07 57.4 83 44.6
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 7.1e-07 57.4 47 57.4
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 7.1e-07 57.4 47 57.4
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 7.1e-07 57.4 49 57.1
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 7.1e-07 57.4 46 60.9
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 7.1e-07 57.4 46 58.7
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 7.1e-07 57.4 47 59.6
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 1.2e-06 56.6 46 58.7
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 2.1e-06 55.8 93 43.0
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 2.1e-06 55.8 80 46.2
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 2.1e-06 55.8 47 59.6
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 2.1e-06 55.8 47 59.6
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 2.7e-06 55.5 61 52.5
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 2.7e-06 55.5 61 52.5
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 2.7e-06 55.5 99 41.4
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 2.7e-06 55.5 68 45.6
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 2.7e-06 55.5 47 59.6
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 2.7e-06 55.5 58 53.4
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 3.5e-06 55.1 72 45.8
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 3.5e-06 55.1 72 45.8
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 4.6e-06 54.7 81 46.9
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 7.8e-06 53.9 60 50.0
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 7.8e-06 53.9 60 50.0
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 7.8e-06 53.9 47 59.6


User provided reference genes

Program Settings