Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0090s0045 Marchantia polymorpha HOM05D000141 ORTHO05D024949 0.0e+00 1271.1 667 100.0
Mapoly0063s0065 Marchantia polymorpha HOM05D024533 ORTHO05D024949 6.7e-88 329.3 491 37.1
Pp3c1_18911 Physcomitrium patens HOM05D024533 ORTHO05D024949 7.2e-74 282.7 457 34.4
SMO143G0011 Selaginella moellendorffii HOM05D024533 ORTHO05D024949 1.4e-72 278.5 748 29.5
CBR_g11025 Chara braunii HOM05D000141 ORTHO05D024949 2.7e-36 157.9 217 40.1
Cre06.g278125 Chlamydomonas reinhardtii HOM05D000141 ORTHO05D004489 6.2e-33 146.7 544 25.6
Gohir.D03G000600 Gossypium hirsutum HOM05D000141 ORTHO05D004489 8.3e-30 136.3 589 24.6
Gorai.003G001000 Gossypium raimondii HOM05D000141 ORTHO05D004489 8.3e-30 136.3 589 24.8
Gohir.A02G179100 Gossypium hirsutum HOM05D000141 ORTHO05D004489 1.4e-29 135.6 589 24.6
MBI04_g23902_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 9.2e-29 132.9 557 25.5
FAN28G1293 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.2e-28 132.5 553 25.0
Glyma.09G194900 Glycine max HOM05D000141 ORTHO05D004489 1.2e-28 132.5 593 24.3
Phvul.003G279200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 1.2e-28 132.5 523 24.1
FAN23G0353 Fragaria x ananassa HOM05D000141 ORTHO05D004489 2.1e-28 131.7 555 24.5
VMungo0251G0509 Vigna mungo HOM05D000141 ORTHO05D004489 2.7e-28 131.3 596 23.8
CBR_g9092 Chara braunii HOM05D000141 ORTHO05D004489 7.8e-28 129.8 614 24.8
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 1.3e-27 129.0 581 24.3
HanXRQChr14g0443671 Helianthus annuus HOM05D000141 ORTHO05D004489 1.7e-27 128.6 556 23.6
Peaxi162Scf00981g00112 Petunia axillaris HOM05D000141 ORTHO05D004489 1.7e-27 128.6 551 23.0
Thecc.01G000500 Theobroma cacao HOM05D000141 ORTHO05D004489 2.3e-27 128.3 549 24.2
Mapoly0012s0174 Marchantia polymorpha HOM05D000141 ORTHO05D004489 3.0e-27 127.9 524 24.6
Pp3c11_5890 Physcomitrium patens HOM05D000141 ORTHO05D004489 3.0e-27 127.9 596 23.8
ATR0605G264 Amborella trichopoda HOM05D000141 ORTHO05D004489 5.1e-27 127.1 553 23.9
CAN.G883.8 Capsicum annuum HOM05D000141 ORTHO05D004489 6.6e-27 126.7 548 23.2
Glyma.16G111200 Glycine max HOM05D000141 ORTHO05D004489 6.6e-27 126.7 591 23.9
RcHm_v2.0_Chr2g0096601 Rosa chinensis HOM05D000141 ORTHO05D004489 6.6e-27 126.7 632 24.1
Cc07_g12380 Coffea canephora HOM05D000141 ORTHO05D004489 8.6e-27 126.3 587 24.0
Os04g0666900 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004489 8.6e-27 126.3 521 24.0
Solyc02g068340.3 Solanum lycopersicum HOM05D000141 ORTHO05D004489 8.6e-27 126.3 590 22.5
TPR.G14268 Trifolium pratense HOM05D000141 ORTHO05D004489 8.6e-27 126.3 590 23.7
AagrBONN_evm.TU.Sc2ySwM_228.4247 Anthoceros agrestis HOM05D000141 ORTHO05D004489 1.1e-26 125.9 565 23.7
Sopen02g017470 Solanum pennellii HOM05D000141 ORTHO05D004489 1.1e-26 125.9 590 22.4
PGSC0003DMG400009428 Solanum tuberosum HOM05D000141 ORTHO05D004489 1.1e-26 125.9 588 22.8
Zm00001eb067080 Zea mays HOM05D000141 ORTHO05D004489 1.1e-26 125.9 552 24.1
Lj2g0025271 Lotus japonicus HOM05D000141 ORTHO05D004489 1.5e-26 125.6 596 24.2
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 1.9e-26 125.2 530 24.5
MD02G1106300 Malus domestica HOM05D000141 ORTHO05D004489 1.9e-26 125.2 594 23.6
FvH4_1g09831 Fragaria vesca HOM05D000141 ORTHO05D004489 2.5e-26 124.8 632 23.7
COL.COLO4_22572 Corchorus olitorius HOM05D000141 ORTHO05D004489 3.3e-26 124.4 521 25.0
FAN23G1938 Fragaria x ananassa HOM05D000141 ORTHO05D004489 4.3e-26 124.0 632 23.6
FAN26G1899 Fragaria x ananassa HOM05D000141 ORTHO05D004489 4.3e-26 124.0 632 23.6
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 4.3e-26 124.0 557 24.6
CBR_g8104 Chara braunii HOM05D000141 ORTHO05D004489 5.6e-26 123.6 519 23.7
Eucgr.I02176 Eucalyptus grandis HOM05D000141 ORTHO05D004489 5.6e-26 123.6 523 24.1
Potri.011G146700 Populus trichocarpa HOM05D000141 ORTHO05D004489 5.6e-26 123.6 526 25.1
Sed0006453 Sechium edule HOM05D000141 ORTHO05D004489 5.6e-26 123.6 527 25.4
Cpa.g.sc17.14 Carica papaya HOM05D000141 ORTHO05D004489 7.3e-26 123.2 527 24.5
Ciclev10024719m.g Citrus clementina HOM05D000141 ORTHO05D004489 7.3e-26 123.2 590 24.1
PRCOL_00006273 Prasinoderma coloniale HOM05D000141 ORTHO05D004489 9.5e-26 122.9 524 25.0
Psat2g146880 Pisum sativum HOM05D000141 ORTHO05D004489 1.2e-25 122.5 591 24.4
TAR381G1317 Trochodendron aralioides HOM05D000141 ORTHO05D004489 1.2e-25 122.5 524 24.2
GSVIVG01026414001 Vitis vinifera HOM05D000141 ORTHO05D004489 1.2e-25 122.5 595 23.7
CDE11G0155 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 1.6e-25 122.1 557 23.7
FAN19G2837 Fragaria x ananassa HOM05D000141 ORTHO05D004489 1.6e-25 122.1 596 23.7
MBI01_g31984_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 1.6e-25 122.1 553 24.4
Dinv19108 Davidia involucrata HOM05D000141 ORTHO05D004489 2.1e-25 121.7 589 23.1
Nn6g31557 Nelumbo nucifera HOM05D000141 ORTHO05D004489 2.1e-25 121.7 523 24.1
Prupe.7G188900 Prunus persica HOM05D000141 ORTHO05D004489 2.1e-25 121.7 594 23.7
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 2.8e-25 121.3 631 23.9
Duzib147G0825 Durio zibethinus HOM05D000141 ORTHO05D004489 2.8e-25 121.3 586 23.9
Hma1.2p1_0085F.1_g044180 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 2.8e-25 121.3 592 24.2
Lj2C507G14 Lonicera japonica HOM05D000141 ORTHO05D004489 2.8e-25 121.3 524 24.2
SalBow5G4210 Salvia bowleyana HOM05D000141 ORTHO05D004489 2.8e-25 121.3 528 23.9
Migut.K01161 Erythranthe guttata HOM05D000141 ORTHO05D004489 3.6e-25 120.9 551 23.4
Psat4g106800 Pisum sativum HOM05D000141 ORTHO05D004489 3.6e-25 120.9 640 23.4
PGR119G2404 Punica granatum HOM05D000141 ORTHO05D004489 3.6e-25 120.9 520 23.3
Manes.01G158800 Manihot esculenta HOM05D000141 ORTHO05D004489 4.7e-25 120.6 526 24.5
Oeu025038.1 Olea europaea HOM05D000141 ORTHO05D004489 4.7e-25 120.6 558 24.6
Potri.001G455300 Populus trichocarpa HOM05D000141 ORTHO05D004489 4.7e-25 120.6 526 23.6
VMungo1215G2882 Vigna mungo HOM05D000141 ORTHO05D004489 4.7e-25 120.6 596 24.0
Glyma.01G155300 Glycine max HOM05D000141 ORTHO05D004489 6.2e-25 120.2 596 23.2
Medtr5g025100 Medicago truncatula HOM05D000141 ORTHO05D004489 6.2e-25 120.2 589 24.1
MSTRG.3653 Avicennia marina HOM05D000141 ORTHO05D004489 8.1e-25 119.8 526 24.9
CSS0021249 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 8.1e-25 119.8 549 23.1
DCAR_000973 Daucus carota HOM05D000141 ORTHO05D004489 8.1e-25 119.8 607 22.6
ECA238G3829 Erigeron canadensis HOM05D000141 ORTHO05D004489 8.1e-25 119.8 558 24.0
SGA_v2.0_scaffold229G43289 Striga asiatica HOM05D000141 ORTHO05D004489 8.1e-25 119.8 588 24.5
Medtr8g072430 Medicago truncatula HOM05D000141 ORTHO05D004489 1.1e-24 119.4 523 22.9
MCO02G386 Micromonas commoda HOM05D000141 ORTHO05D004489 1.1e-24 119.4 518 23.6
AUR62016257 Chenopodium quinoa HOM05D000141 ORTHO05D004489 1.4e-24 119.0 591 24.4
MELO3C013702.2 Cucumis melo HOM05D000141 ORTHO05D004489 1.4e-24 119.0 526 24.7
MD15G1226100 Malus domestica HOM05D000141 ORTHO05D004489 1.4e-24 119.0 600 23.8
PSO170G4746 Papaver somniferum HOM05D000141 ORTHO05D004489 1.4e-24 119.0 592 23.8
QL06p053568 Quercus lobata HOM05D000141 ORTHO05D004489 1.4e-24 119.0 525 24.8
THA.LOC104824715 Tarenaya hassleriana HOM05D000141 ORTHO05D004489 1.8e-24 118.6 525 24.2
Haze_03652 Corylus avellana HOM05D000141 ORTHO05D004489 2.3e-24 118.2 553 24.4
EL10Ac6g14723 Beta vulgaris HOM05D000141 ORTHO05D004489 3.1e-24 117.9 590 23.2
Lsat_1_v5_gn_2_72800 Lactuca sativa HOM05D000141 ORTHO05D004489 4.0e-24 117.5 561 23.9
Ah.03g149230 Amaranthus hybridus HOM05D000141 ORTHO05D004489 5.2e-24 117.1 588 23.3
Oeu004295.1 Olea europaea HOM05D000141 ORTHO05D004489 5.2e-24 117.1 555 22.9
Phvul.002G120200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 5.2e-24 117.1 593 23.6
Lj4C246T10 Lonicera japonica HOM05D000141 ORTHO05D004489 6.8e-24 116.7 597 23.6
Ca_22442_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 8.9e-24 116.3 468 23.9
Ca_22449_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 8.9e-24 116.3 468 23.9
Lalb_Chr09g0324901 Lupinus albus HOM05D000141 ORTHO05D004489 8.9e-24 116.3 597 23.8
Pp3c9_4530 Physcomitrium patens HOM05D000141 ORTHO05D004489 8.9e-24 116.3 571 22.4
Pp3c15_3730 Physcomitrium patens HOM05D000141 ORTHO05D004489 1.2e-23 115.9 575 22.8
TWI31G1431 Tripterygium wilfordii HOM05D000141 ORTHO05D004489 1.2e-23 115.9 523 23.7
arahy.Tifrunner.gnm1.ann1.SMPN38 Arachis hypogaea HOM05D000141 ORTHO05D004489 1.5e-23 115.5 591 23.7
Rhsim10G0188900 Rhododendron simsii HOM05D000141 ORTHO05D004489 2.0e-23 115.2 523 22.9
SMO118G0228 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 2.0e-23 115.2 573 22.5
SMO222G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 2.0e-23 115.2 573 22.5
CANSAT25G2595 Cannabis sativa HOM05D000141 ORTHO05D004489 4.4e-23 114.0 560 23.2
Glyma.11G089400 Glycine max HOM05D000141 ORTHO05D004489 4.4e-23 114.0 596 23.3
AL8G45710 Arabidopsis lyrata HOM05D000141 ORTHO05D004489 5.8e-23 113.6 592 23.5
AT5G65930 Arabidopsis thaliana HOM05D000141 ORTHO05D004489 5.8e-23 113.6 592 23.5
Sc03g0004200 Simmondsia chinensis HOM05D000141 ORTHO05D004489 9.9e-23 112.8 588 23.5
arahy.Tifrunner.gnm1.ann1.C6YA57 Arachis hypogaea HOM05D000141 ORTHO05D004489 1.3e-22 112.5 591 23.5
Pp3c2_29920 Physcomitrium patens HOM05D000141 ORTHO05D004489 1.7e-22 112.1 494 22.9
BcaB04g20133 Brassica carinata HOM05D000141 ORTHO05D004489 2.2e-22 111.7 591 23.0
A09p10250 Brassica napus HOM05D000141 ORTHO05D004489 2.2e-22 111.7 522 23.2
BolC9t54106H Brassica oleracea HOM05D000141 ORTHO05D004489 2.2e-22 111.7 522 23.2
Carub.0008s2860 Capsella rubella HOM05D000141 ORTHO05D004489 2.9e-22 111.3 592 23.1
Rhsim08G0024500 Rhododendron simsii HOM05D000141 ORTHO05D004489 2.9e-22 111.3 531 23.7
BraA09t36670Z Brassica rapa HOM05D000141 ORTHO05D004489 3.8e-22 110.9 520 23.1
Thhalv10003527m.g Eutrema salsugineum HOM05D000141 ORTHO05D004489 3.8e-22 110.9 580 22.9
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 4.9e-22 110.5 590 22.2
Sp2g30770 Schrenkiella parvula HOM05D000141 ORTHO05D004489 4.9e-22 110.5 595 23.4
Aa31LG1G14480 Aethionema arabicum HOM05D000522 ORTHO05D004489 8.4e-22 109.8 600 23.2
BcaC04g23100 Brassica carinata HOM05D000141 ORTHO05D004489 8.4e-22 109.8 522 23.0
C09p12180 Brassica napus HOM05D000141 ORTHO05D004489 8.4e-22 109.8 522 23.0
SEGI_37552 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 1.4e-21 109.0 638 23.0
CiPaw.08G183100 Carya illinoinensis HOM05D000141 ORTHO05D004489 3.2e-21 107.8 589 23.1
CARHR053030 Cardamine hirsuta HOM05D000141 ORTHO05D004489 5.4e-21 107.1 594 23.2
AUR62003324 Chenopodium quinoa HOM05D000141 ORTHO05D004489 5.4e-21 107.1 611 23.1
BolC2t12563H Brassica oleracea HOM05D000141 ORTHO05D004489 4.6e-20 104.0 598 23.1
BraA02t09381Z Brassica rapa HOM05D000141 ORTHO05D004489 1.0e-19 102.8 496 23.2
vmacro20418 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 1.0e-19 102.8 476 24.8
HPP92_022037 Vanilla planifolia HOM05D000141 ORTHO05D004489 1.3e-19 102.4 356 25.0
CSS0002075 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 3.0e-19 101.3 486 24.3
HPP92_023789 Vanilla planifolia HOM05D000141 ORTHO05D004489 8.6e-19 99.8 526 23.6
Sabra16G0308000 Salix brachista HOM05D000141 ORTHO05D004489 1.9e-18 98.6 589 22.9
vmacro18483 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 3.6e-17 94.4 523 22.9
CsaV3_UNG147160 Cucumis sativus L. HOM05D000141 ORTHO05D004489 8.1e-17 93.2 486 24.3
Sabra11G0131600 Salix brachista HOM05D000141 ORTHO05D004489 2.0e-15 88.6 427 24.1
CsaV3_3G000070 Cucumis sativus L. HOM05D000141 ORTHO05D004489 7.6e-15 86.7 349 24.9
Ca_25026_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 3.2e-13 81.3 297 25.9
unitig_748.g7256 Utricularia gibba HOM05D000141 ORTHO05D004489 1.6e-12 79.0 365 23.0
TPR.G33741 Trifolium pratense HOM05D000141 ORTHO05D004489 1.3e-11 75.9 225 27.1
Nitab4.5_0028853g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 5.6e-10 70.5 224 24.6
Nitab4.5_0017516g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004489 9.6e-10 69.7 224 24.6
ClCG10G000070 Citrullus lanatus HOM05D000141 ORTHO05D004489 3.1e-08 64.7 203 27.1
Dinv28284 Davidia involucrata HOM05D000141 ORTHO05D004489 4.0e-08 64.3 318 22.0


User provided reference genes

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