Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0090s0030 Marchantia polymorpha HOM05D052710 ORTHO05D006323 0.0e+00 4821.5 3467 100.0
Mapoly0164s0024 Marchantia polymorpha HOM05D052710 ORTHO05D006323 1.0e-110 407.5 313 80.2
Pp3c4_12010 Physcomitrium patens HOM05D005366 ORTHO05D006323 7.6e-34 152.1 1548 21.8
Os02g0148300 Oryza sativa ssp. japonica HOM05D005366 ORTHO05D006323 5.5e-32 146.0 323 33.1
SEGI_37710 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 7.1e-32 145.6 1627 22.1
GSVIVG01033178001 Vitis vinifera HOM05D005366 ORTHO05D006323 1.3e-30 141.4 321 34.0
CDE07G0441 Ceratophyllum demersum HOM05D005366 ORTHO05D006323 6.7e-30 139.0 349 33.5
PGR119G1611 Punica granatum HOM05D005366 ORTHO05D006323 4.8e-28 132.9 1646 21.5
ATR0580G390 Amborella trichopoda HOM05D005366 ORTHO05D006323 8.2e-28 132.1 1573 21.2
Haze_21760 Corylus avellana HOM05D005366 ORTHO05D006323 2.4e-27 130.6 319 35.7
PSO170G4550 Papaver somniferum HOM05D005366 ORTHO05D006323 2.0e-26 127.5 354 33.3
DCAR_000688 Daucus carota HOM05D005366 ORTHO05D006323 1.3e-25 124.8 1538 21.7
AT4G31570 Arabidopsis thaliana HOM05D005366 ORTHO05D006323 6.5e-25 122.5 352 30.1
Prupe.1G459000 Prunus persica HOM05D005366 ORTHO05D006323 3.2e-24 120.2 1588 22.2
TAR625G1380 Trochodendron aralioides HOM05D005366 ORTHO05D006323 4.2e-24 119.8 317 31.2
Dinv04518 Davidia involucrata HOM05D005366 ORTHO05D006323 5.5e-24 119.4 1661 20.1
MD15G1106500 Malus domestica HOM05D005366 ORTHO05D006323 7.2e-24 119.0 1619 21.1
QL12p025430 Quercus lobata HOM05D005366 ORTHO05D006323 9.4e-24 118.6 1647 22.0
Rhsim11G0005000 Rhododendron simsii HOM05D005366 ORTHO05D006323 1.6e-23 117.9 1644 21.7
Oeu053860.1 Olea europaea HOM05D005366 ORTHO05D006323 2.7e-23 117.1 1731 20.7
PGR119G0825 Punica granatum HOM05D002970 ORTHO05D007037 7.9e-23 115.5 299 30.8
SGA_v2.0_scaffold193G40671 Striga asiatica HOM05D005366 ORTHO05D006323 3.0e-22 113.6 1600 21.3
CiPaw.07G211400 Carya illinoinensis HOM05D005366 ORTHO05D006323 3.9e-22 113.2 1522 21.5
Manes.16G134600 Manihot esculenta HOM05D005366 ORTHO05D006323 6.7e-22 112.5 1686 21.1
C01p07430 Brassica napus HOM05D005366 ORTHO05D006323 8.8e-22 112.1 1501 19.9
Ah.12g061220 Amaranthus hybridus HOM05D005366 ORTHO05D006323 1.1e-21 111.7 1631 22.4
Gohir.D07G002400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 1.1e-21 111.7 1640 22.0
Sed0022070 Sechium edule HOM05D002970 ORTHO05D007037 1.1e-21 111.7 320 28.8
AagrBONN_evm.TU.Sc2ySwM_117.273 Anthoceros agrestis HOM05D005366 ORTHO05D006323 1.5e-21 111.3 1767 19.8
CANSAT01G0097 Cannabis sativa HOM05D002970 ORTHO05D007037 1.5e-21 111.3 309 28.2
CSS0043382 Camellia sinensis var. sinensis HOM05D005366 ORTHO05D006323 1.9e-21 110.9 932 23.6
SalBow4G0033 Salvia bowleyana HOM05D005366 ORTHO05D006323 2.5e-21 110.5 1502 21.1
SEGI_23098 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 2.5e-21 110.5 1605 20.9
Gorai.001G002300 Gossypium raimondii HOM05D005366 ORTHO05D006323 4.3e-21 109.8 1633 21.5
MD16G1107700 Malus domestica HOM05D002970 ORTHO05D007037 2.8e-20 107.1 310 29.7
Nitab4.5_0000041g0280 Nicotiana tabacum HOM05D002970 ORTHO05D007037 3.7e-20 106.7 1612 21.9
FvH4_4g24950 Fragaria vesca HOM05D002970 ORTHO05D007037 2.4e-19 104.0 302 27.2
VMungo1383G0211 Vigna mungo HOM05D002970 ORTHO05D007037 2.4e-19 104.0 375 26.1
Cc08_g06500 Coffea canephora HOM05D005366 ORTHO05D006323 5.3e-19 102.8 1593 21.0
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 6.9e-19 102.4 996 22.0
Eucgr.H04698 Eucalyptus grandis HOM05D002970 ORTHO05D007037 6.9e-19 102.4 306 30.4
Lj6g0025430 Lotus japonicus HOM05D002970 ORTHO05D007037 6.9e-19 102.4 590 22.5
Gorai.002G190100 Gossypium raimondii HOM05D002970 ORTHO05D007037 9.1e-19 102.1 875 23.1
RcHm_v2.0_Chr4g0431991 Rosa chinensis HOM05D002970 ORTHO05D007037 9.1e-19 102.1 372 25.5
FAN22G0223 Fragaria x ananassa HOM05D002970 ORTHO05D007037 1.2e-18 101.7 302 26.8
Lj5g0008306 Lotus japonicus HOM05D005366 ORTHO05D006323 1.2e-18 101.7 1650 20.4
CARHR026670 Cardamine hirsuta HOM05D002970 ORTHO05D007037 2.0e-18 100.9 309 31.1
Medtr1g009610 Medicago truncatula HOM05D005366 ORTHO05D006323 2.0e-18 100.9 1635 19.7
Potri.018G008600 Populus trichocarpa HOM05D005366 ORTHO05D006323 2.6e-18 100.5 1668 20.9
FAN07G0847 Fragaria x ananassa HOM05D002970 ORTHO05D007037 3.4e-18 100.1 292 27.1
TPR.G14240 Trifolium pratense HOM05D002970 ORTHO05D007037 4.5e-18 99.8 309 28.5
arahy.Tifrunner.gnm1.ann1.CS70SB Arachis hypogaea HOM05D002970 ORTHO05D007037 7.7e-18 99.0 310 26.1
ClCG05G026190 Citrullus lanatus HOM05D002970 ORTHO05D007037 7.7e-18 99.0 371 26.7
Sp7g29400 Schrenkiella parvula HOM05D005366 ORTHO05D006323 1.0e-17 98.6 1523 20.5
EL10Ac2g02416 Beta vulgaris HOM05D005366 ORTHO05D006323 1.3e-17 98.2 1651 20.0
Cpa.g.sc23.30 Carica papaya HOM05D005366 ORTHO05D006323 1.3e-17 98.2 352 28.7
Nn8g40726 Nelumbo nucifera HOM05D005366 ORTHO05D006323 1.3e-17 98.2 1603 21.3
Dinv11020 Davidia involucrata HOM05D002970 ORTHO05D007037 1.7e-17 97.8 1618 20.9
arahy.Tifrunner.gnm1.ann1.9A7Q93 Arachis hypogaea HOM05D002970 ORTHO05D007037 2.2e-17 97.4 310 25.8
Duzib251G0656 Durio zibethinus HOM05D002970 ORTHO05D007037 2.2e-17 97.4 310 28.1
Thhalv10006539m.g Eutrema salsugineum HOM05D002970 ORTHO05D007037 2.2e-17 97.4 307 30.6
BolC5t31302H Brassica oleracea HOM05D002970 ORTHO05D007037 3.8e-17 96.7 302 31.5
Ca_25118_v3 Cicer arietinum L. HOM05D002970 ORTHO05D007037 3.8e-17 96.7 312 24.7
Migut.A00429 Erythranthe guttata HOM05D005366 ORTHO05D006323 5.0e-17 96.3 1565 21.8
Ciclev10007223m.g Citrus clementina HOM05D005366 ORTHO05D006323 6.5e-17 95.9 1632 20.5
Gohir.A07G002100 Gossypium hirsutum HOM05D005366 ORTHO05D006323 6.5e-17 95.9 1622 21.3
FAN12G1086 Fragaria x ananassa HOM05D002970 ORTHO05D007037 8.5e-17 95.5 190 32.6
Hma1.2p1_0272F.1_g109200 Hydrangea macrophylla HOM05D005366 ORTHO05D006323 8.5e-17 95.5 109 47.7
HanXRQChr03g0082501 Helianthus annuus HOM05D005366 ORTHO05D006323 1.1e-16 95.1 1592 20.7
Lalb_Chr23g0277811 Lupinus albus HOM05D002970 ORTHO05D007037 1.4e-16 94.7 196 30.6
HanXRQChr08g0208001 Helianthus annuus HOM05D002970 ORTHO05D007037 1.9e-16 94.4 106 45.3
SEGI_07626 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 1.9e-16 94.4 1131 21.7
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 2.5e-16 94.0 1495 20.1
COL.COLO4_23553 Corchorus olitorius HOM05D002970 ORTHO05D007037 3.2e-16 93.6 363 27.0
ECA233G2191 Erigeron canadensis HOM05D002970 ORTHO05D007037 3.2e-16 93.6 113 44.2
Actinidia06431 Actinidia chinensis HOM05D005366 ORTHO05D006323 4.2e-16 93.2 1684 19.7
AT1G24460 Arabidopsis thaliana HOM05D002970 ORTHO05D007037 4.2e-16 93.2 305 28.9
BcaC05g26524 Brassica carinata HOM05D002970 ORTHO05D007037 5.5e-16 92.8 296 28.0
Glyma.17G197200 Glycine max HOM05D005366 ORTHO05D006323 5.5e-16 92.8 940 21.8
BcaC09g51938 Brassica carinata HOM05D005366 ORTHO05D006323 7.2e-16 92.4 1497 20.5
COL.COLO4_30023 Corchorus olitorius HOM05D005366 ORTHO05D006323 7.2e-16 92.4 1611 23.6
QL03p055853 Quercus lobata HOM05D002970 ORTHO05D007037 1.2e-15 91.7 372 28.5
Sed0008947 Sechium edule HOM05D005366 ORTHO05D006323 1.2e-15 91.7 1556 20.8
BcaC05g26716 Brassica carinata HOM05D002970 ORTHO05D007037 1.6e-15 91.3 313 29.4
CARHR239450 Cardamine hirsuta HOM05D005366 ORTHO05D006323 1.6e-15 91.3 1446 21.5
Psat0s839g0040 Pisum sativum HOM05D005366 ORTHO05D006323 1.6e-15 91.3 1062 22.4
Aqoxy7G02854 Aquilegia oxysepala HOM05D005366 ORTHO05D006323 2.1e-15 90.9 1559 19.4
Rhsim12G0037200 Rhododendron simsii HOM05D002970 ORTHO05D007037 2.1e-15 90.9 301 27.9
Zm00001eb232290 Zea mays HOM05D005366 ORTHO05D006323 2.7e-15 90.5 1588 22.5
Carub.0001s2565 Capsella rubella HOM05D002970 ORTHO05D007037 3.6e-15 90.1 558 24.2
Gohir.D01G153501 Gossypium hirsutum HOM05D002970 ORTHO05D007037 3.6e-15 90.1 875 22.7
HanXRQChr12g0372101 Helianthus annuus HOM05D002970 ORTHO05D007037 3.6e-15 90.1 114 43.9
AL1G40480 Arabidopsis lyrata HOM05D002970 ORTHO05D007037 4.7e-15 89.7 306 28.8
BcaNung04128 Brassica carinata HOM05D005366 ORTHO05D006323 1.4e-14 88.2 1448 20.7
Nitab4.5_0007823g0020 Nicotiana tabacum HOM05D002970 ORTHO05D007037 1.8e-14 87.8 1600 22.7
Thecc.02G269400 Theobroma cacao HOM05D002970 ORTHO05D007037 1.8e-14 87.8 632 22.8
BraA08t34608Z Brassica rapa HOM05D002970 ORTHO05D007037 3.0e-14 87.0 560 24.1
A08p26560 Brassica napus HOM05D002970 ORTHO05D007037 5.1e-14 86.3 567 25.4
THA.LOC104825534 Tarenaya hassleriana HOM05D002970 ORTHO05D007037 8.8e-14 85.5 302 26.2
Medtr3g086150 Medicago truncatula HOM05D002970 ORTHO05D007037 1.1e-13 85.1 570 20.9
Thecc.09G008500 Theobroma cacao HOM05D005366 ORTHO05D006323 1.1e-13 85.1 1673 21.0
PSO063G0316 Papaver somniferum HOM05D005366 ORTHO05D006323 9.7e-13 82.0 1664 21.7
Glyma.14G135900 Glycine max HOM05D005366 ORTHO05D006323 1.7e-12 81.3 933 22.4
A03p60870 Brassica napus HOM05D005366 ORTHO05D006323 2.2e-12 80.9 1055 21.6
BraA03t15125Z Brassica rapa HOM05D005366 ORTHO05D006323 2.2e-12 80.9 1055 21.6
Cpa.g.sc86.7 Carica papaya HOM05D002970 ORTHO05D007037 2.2e-12 80.9 570 23.0
RcHm_v2.0_Chr6g0305121 Rosa chinensis HOM05D005366 ORTHO05D006323 2.2e-12 80.9 1652 21.0
Aa31LG2G18730 Aethionema arabicum HOM05D005366 ORTHO05D006323 3.7e-12 80.1 1487 20.4
CANSAT25G3462 Cannabis sativa HOM05D005366 ORTHO05D006323 4.8e-12 79.7 1589 20.0
vmacro00028 Vaccinium macrocarpon HOM05D005366 ORTHO05D006323 6.3e-12 79.3 1700 21.3
BcaNung01513 Brassica carinata HOM05D005366 ORTHO05D006323 8.2e-12 79.0 1032 21.4
Phvul.001G257700 Phaseolus vulgaris HOM05D002970 ORTHO05D007037 8.2e-12 79.0 891 20.1
BcaB03g12058 Brassica carinata HOM05D002970 ORTHO05D007037 1.1e-11 78.6 724 24.0
BolC3t19641H Brassica oleracea HOM05D002970 ORTHO05D007037 1.1e-11 78.6 568 24.5
DCAR_031175 Daucus carota HOM05D002970 ORTHO05D007037 1.4e-11 78.2 193 29.5
MSTRG.25794 Avicennia marina HOM05D005366 ORTHO05D006323 4.1e-11 76.6 1801 20.3
Haze_21759 Corylus avellana HOM05D005366 ORTHO05D006323 4.1e-11 76.6 713 23.0
CsaV3_3G047150 Cucumis sativus L. HOM05D005366 ORTHO05D006323 4.1e-11 76.6 1654 21.0
unitig_749.g13282 Utricularia gibba HOM05D002970 ORTHO05D009571 7.0e-11 75.9 97 45.4
C07p58760 Brassica napus HOM05D005366 ORTHO05D006323 2.0e-10 74.3 1030 21.0
BolC7t46324H Brassica oleracea HOM05D005366 ORTHO05D006323 2.0e-10 74.3 1030 21.0
Thhalv10024180m.g Eutrema salsugineum HOM05D005366 ORTHO05D006323 2.6e-10 73.9 1609 18.8
AUR62037714 Chenopodium quinoa HOM05D005366 ORTHO05D006323 4.5e-10 73.2 1629 21.2
AUR62020289 Chenopodium quinoa HOM05D005366 ORTHO05D006323 7.7e-10 72.4 1674 20.6
HPP92_018359 Vanilla planifolia HOM05D005366 ORTHO05D006323 7.7e-10 72.4 1601 20.5
CAN.G49.7 Capsicum annuum HOM05D002970 ORTHO05D007037 1.0e-09 72.0 1576 20.4
MD08G1126800 Malus domestica HOM05D005366 ORTHO05D006323 1.3e-09 71.6 691 22.4
CAN.G673.20 Capsicum annuum HOM05D005366 ORTHO05D006323 1.7e-09 71.2 888 23.3
TPR.G12019 Trifolium pratense HOM05D005366 ORTHO05D006323 1.7e-09 71.2 1623 21.1
unitig_32.g11652 Utricularia gibba HOM05D005366 ORTHO05D006323 1.7e-09 71.2 874 22.4
Hma1.2p1_0272F.1_g109220 Hydrangea macrophylla HOM05D005366 ORTHO05D006323 2.2e-09 70.9 373 22.8
MSTRG.540 Avicennia marina HOM05D002970 ORTHO05D007037 2.9e-09 70.5 725 22.8
Actinidia08107 Actinidia chinensis HOM05D002970 ORTHO05D007037 3.8e-09 70.1 1671 20.2
Lj7C748G6 Lonicera japonica HOM05D005366 ORTHO05D006323 3.8e-09 70.1 1597 20.8
Actinidia30694 Actinidia chinensis HOM05D002970 ORTHO05D007037 5.0e-09 69.7 885 21.8
Manes.12G018200 Manihot esculenta HOM05D002970 ORTHO05D007037 5.0e-09 69.7 1104 20.4
COL.COLO4_19020 Corchorus olitorius HOM05D005366 ORTHO05D006323 8.5e-09 68.9 921 23.8
TAR625G0224 Trochodendron aralioides HOM05D005366 ORTHO05D006323 1.9e-08 67.8 378 24.6
Duzib268G0312 Durio zibethinus HOM05D002970 ORTHO05D007037 2.5e-08 67.4 1126 20.7
Phvul.001G060300 Phaseolus vulgaris HOM05D005366 ORTHO05D006323 2.5e-08 67.4 1602 20.5
Carub.0007s0900 Capsella rubella HOM05D005366 ORTHO05D006323 3.2e-08 67.0 1496 18.9
MBI11_g22624_MAGBIO Magnolia biondii HOM05D002970 ORTHO05D007037 4.2e-08 66.6 462 24.2
BcaC06g35268 Brassica carinata HOM05D002970 ORTHO05D007037 5.5e-08 66.2 90 38.9
vmacro01100 Vaccinium macrocarpon HOM05D002970 ORTHO05D007037 7.2e-08 65.9 1105 21.4
Solyc08g006420.3 Solanum lycopersicum HOM05D005366 ORTHO05D006323 1.2e-07 65.1 717 22.0
ECA246G5228 Erigeron canadensis HOM05D002970 ORTHO05D001380 1.6e-07 64.7 493 27.2
RcHm_v2.0_Chr6g0305291 Rosa chinensis HOM05D005366 ORTHO05D006323 1.6e-07 64.7 1591 20.6
GSVIVG01010295001 Vitis vinifera HOM05D002970 ORTHO05D007037 3.6e-07 63.5 467 23.3
GSVIVG01033179001 Vitis vinifera HOM05D005366 ORTHO05D006323 3.6e-07 63.5 277 26.7
Sopen08g002360 Solanum pennellii HOM05D005366 ORTHO05D006323 6.1e-07 62.8 937 20.4
CSS0037497 Camellia sinensis var. sinensis HOM05D002970 ORTHO05D007037 8.0e-07 62.4 521 23.4
PSO013G0304 Papaver somniferum HOM05D002970 ORTHO05D007037 8.0e-07 62.4 945 22.2
PSO063G0226 Papaver somniferum HOM05D002970 ORTHO05D007037 8.0e-07 62.4 946 22.0
PSO063G6630 Papaver somniferum HOM05D002970 ORTHO05D007037 8.0e-07 62.4 978 22.6
Dinv14772 Davidia involucrata HOM05D002970 ORTHO05D007037 1.0e-06 62.0 1642 21.7
Solyc05g014200.3 Solanum lycopersicum HOM05D002970 ORTHO05D007037 1.0e-06 62.0 1617 20.9
Gorai.005G173600 Gossypium raimondii HOM05D002970 ORTHO05D007037 1.4e-06 61.6 1638 20.6
EL10As2g23227 Beta vulgaris HOM05D002970 ORTHO05D007037 1.8e-06 61.2 673 21.1
MELO3C003621.2 Cucumis melo HOM05D005366 ORTHO05D006323 1.8e-06 61.2 1079 21.2
Gohir.D05G066000 Gossypium hirsutum HOM05D005366 ORTHO05D006323 2.3e-06 60.8 1045 24.6
Sp1g23340 Schrenkiella parvula HOM05D002970 ORTHO05D007037 2.3e-06 60.8 391 22.3
Duzib268G0346 Durio zibethinus HOM05D002970 ORTHO05D007037 3.0e-06 60.5 305 23.0
SMO146G0186 Selaginella moellendorffii HOM05D005366 ORTHO05D006323 3.0e-06 60.5 192 27.6
VMungo0647G1874 Vigna mungo HOM05D005366 ORTHO05D006323 3.0e-06 60.5 1614 20.8
Duzib168G0091 Durio zibethinus HOM05D005366 ORTHO05D006323 3.9e-06 60.1 1573 21.9
Gorai.009G066800 Gossypium raimondii HOM05D005366 ORTHO05D006323 3.9e-06 60.1 1051 23.5
TWI63G1827 Tripterygium wilfordii HOM05D005366 ORTHO05D006323 8.8e-06 58.9 1646 20.0


User provided reference genes

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