Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0088s0028 Marchantia polymorpha HOM05D007648 ORTHO05D009613 6.8e-41 170.2 87 100.0
Thecc.08G051700 Theobroma cacao HOM05D007648 ORTHO05D009613 2.8e-18 95.1 77 58.4
Duzib093G2040 Durio zibethinus HOM05D007648 ORTHO05D009613 4.7e-18 94.4 77 58.4
COL.COLO4_26084 Corchorus olitorius HOM05D007648 ORTHO05D009613 1.4e-17 92.8 77 58.4
Gohir.D01G035600 Gossypium hirsutum HOM05D007648 ORTHO05D009613 2.4e-17 92.0 77 55.8
Gorai.002G043700 Gossypium raimondii HOM05D007648 ORTHO05D009613 2.4e-17 92.0 77 55.8
RcHm_v2.0_Chr6g0303661 Rosa chinensis HOM05D007648 ORTHO05D009613 3.1e-17 91.7 80 57.5
A08p09340 Brassica napus HOM05D007648 ORTHO05D009613 4.0e-17 91.3 77 54.5
BolC8t48002H Brassica oleracea HOM05D007648 ORTHO05D009613 4.0e-17 91.3 77 54.5
Psat6g001120 Pisum sativum HOM05D007648 ORTHO05D009613 4.0e-17 91.3 77 54.5
Gohir.A01G044700 Gossypium hirsutum HOM05D007648 ORTHO05D009613 5.2e-17 90.9 77 54.5
Dinv31891 Davidia involucrata HOM05D007648 ORTHO05D009613 8.9e-17 90.1 80 55.0
BcaB07g30075 Brassica carinata HOM05D007648 ORTHO05D009613 1.2e-16 89.7 77 54.5
BcaC07g37632 Brassica carinata HOM05D007648 ORTHO05D009613 1.2e-16 89.7 77 53.2
QL02p012929 Quercus lobata HOM05D007648 ORTHO05D009613 1.2e-16 89.7 78 56.4
BraA08t32933Z Brassica rapa HOM05D007648 ORTHO05D009613 1.5e-16 89.4 77 53.2
Ca_13484_v3 Cicer arietinum L. HOM05D007648 ORTHO05D009613 1.5e-16 89.4 77 54.5
Cc10_g01140 Coffea canephora HOM05D007648 ORTHO05D009613 2.0e-16 89.0 77 57.1
Medtr1g026100 Medicago truncatula HOM05D007648 ORTHO05D009613 2.0e-16 89.0 77 53.2
Phvul.001G002600 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 2.0e-16 89.0 79 57.0
Actinidia29767 Actinidia chinensis HOM05D007648 ORTHO05D009613 3.4e-16 88.2 80 55.0
Prupe.1G359500 Prunus persica HOM05D007648 ORTHO05D009613 3.4e-16 88.2 80 56.2
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.4e-16 88.2 79 53.2
arahy.Tifrunner.gnm1.ann1.8I3IQY Arachis hypogaea HOM05D007648 ORTHO05D009613 4.4e-16 87.8 77 55.8
arahy.Tifrunner.gnm1.ann1.EILY3I Arachis hypogaea HOM05D007648 ORTHO05D009613 4.4e-16 87.8 77 55.8
vmacro17151 Vaccinium macrocarpon HOM05D007648 ORTHO05D009613 4.4e-16 87.8 77 55.8
CsaV3_3G046120 Cucumis sativus L. HOM05D007648 ORTHO05D009613 5.8e-16 87.4 76 55.3
FvH4_2g37960 Fragaria vesca HOM05D007648 ORTHO05D009613 5.8e-16 87.4 80 53.8
Pp3c8_20950 Physcomitrium patens HOM05D007648 ORTHO05D009613 5.8e-16 87.4 82 54.9
MELO3C003728.2 Cucumis melo HOM05D007648 ORTHO05D009613 7.6e-16 87.0 76 55.3
Lsat_1_v5_gn_5_1580 Lactuca sativa HOM05D007648 ORTHO05D009613 7.6e-16 87.0 76 53.9
Carub.0002s2295 Capsella rubella HOM05D007648 ORTHO05D009613 9.9e-16 86.7 80 52.5
Ciclev10003012m.g Citrus clementina HOM05D007648 ORTHO05D009613 9.9e-16 86.7 78 50.0
FAN20G1741 Fragaria x ananassa HOM05D007648 ORTHO05D009613 9.9e-16 86.7 80 53.8
Phvul.001G002300 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 9.9e-16 86.7 77 57.1
HPP92_003481 Vanilla planifolia HOM05D007648 ORTHO05D009613 9.9e-16 86.7 80 55.0
AagrBONN_evm.TU.Sc2ySwM_344.3278 Anthoceros agrestis HOM05D007648 ORTHO05D009613 1.7e-15 85.9 78 55.1
CiPaw.07G143700 Carya illinoinensis HOM05D007648 ORTHO05D009613 1.7e-15 85.9 76 53.9
FAN15G0474 Fragaria x ananassa HOM05D007648 ORTHO05D009613 1.7e-15 85.9 80 52.5
MD15G1006800 Malus domestica HOM05D007648 ORTHO05D009613 1.7e-15 85.9 80 52.5
TAR625G0376 Trochodendron aralioides HOM05D007648 ORTHO05D009613 2.2e-15 85.5 77 51.9
GSVIVG01008741001 Vitis vinifera HOM05D007648 ORTHO05D009613 2.2e-15 85.5 77 58.4
MD08G1007600 Malus domestica HOM05D007648 ORTHO05D009613 2.9e-15 85.1 80 53.8
Sabra14G0141300 Salix brachista HOM05D000525 ORTHO05D001368 2.9e-15 85.1 74 54.1
Atru.chr13.217 Acer truncatum HOM05D007648 ORTHO05D009613 3.8e-15 84.7 75 56.0
BraA02t08664Z Brassica rapa HOM05D007648 ORTHO05D009613 3.8e-15 84.7 74 52.7
ClCG05G015420 Citrullus lanatus HOM05D007648 ORTHO05D009613 3.8e-15 84.7 79 53.2
Manes.05G142600 Manihot esculenta HOM05D007648 ORTHO05D009613 3.8e-15 84.7 80 51.2
Rhsim07G0248300 Rhododendron simsii HOM05D007648 ORTHO05D009613 3.8e-15 84.7 77 55.8
AT1G76065 Arabidopsis thaliana HOM05D007648 ORTHO05D009613 4.9e-15 84.3 77 51.9
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 4.9e-15 84.3 79 51.9
CARHR069590 Cardamine hirsuta HOM05D007648 ORTHO05D009613 4.9e-15 84.3 77 51.9
Eucgr.F03708 Eucalyptus grandis HOM05D007648 ORTHO05D009613 4.9e-15 84.3 77 54.5
SalBow7G1731 Salvia bowleyana HOM05D007648 ORTHO05D009613 4.9e-15 84.3 76 53.9
Aqoxy5G01099 Aquilegia oxysepala HOM05D007648 ORTHO05D009613 6.4e-15 84.0 77 53.2
Potri.014G181400 Populus trichocarpa HOM05D007648 ORTHO05D009613 6.4e-15 84.0 74 54.1
Sopen06g017690 Solanum pennellii HOM05D007648 ORTHO05D009613 6.4e-15 84.0 77 53.2
PGSC0003DMG400023820 Solanum tuberosum HOM05D007648 ORTHO05D009613 6.4e-15 84.0 77 53.2
AL2G36100 Arabidopsis lyrata HOM05D007648 ORTHO05D009613 8.4e-15 83.6 77 51.9
CSS0030217 Camellia sinensis var. sinensis HOM05D007648 ORTHO05D009613 8.4e-15 83.6 80 52.5
Rhsim07G0248100 Rhododendron simsii HOM05D007648 ORTHO05D009613 8.4e-15 83.6 78 53.8
Ah.00g000660 Amaranthus hybridus HOM05D007648 ORTHO05D009613 1.1e-14 83.2 75 52.0
DCAR_021446 Daucus carota HOM05D007648 ORTHO05D009613 1.1e-14 83.2 77 51.9
HanXRQChr06g0185111 Helianthus annuus HOM05D007648 ORTHO05D009613 1.1e-14 83.2 79 51.9
HPP92_026879 Vanilla planifolia HOM05D007648 ORTHO05D009613 1.1e-14 83.2 80 52.5
CDE04G2628 Ceratophyllum demersum HOM05D007648 ORTHO05D009613 1.4e-14 82.8 76 56.6
Glyma.17G261200 Glycine max HOM05D007648 ORTHO05D009613 1.4e-14 82.8 77 53.2
Sc02g0008840 Simmondsia chinensis HOM05D007648 ORTHO05D009613 1.4e-14 82.8 76 52.6
Lj5g0008894 Lotus japonicus HOM05D007648 ORTHO05D009613 1.9e-14 82.4 77 51.9
Lalb_Chr19g0131601 Lupinus albus HOM05D007648 ORTHO05D009613 1.9e-14 82.4 77 53.2
Sc02g0008880 Simmondsia chinensis HOM05D007648 ORTHO05D009613 1.9e-14 82.4 76 52.6
TWI12G0541 Tripterygium wilfordii HOM05D007648 ORTHO05D009613 1.9e-14 82.4 82 48.8
Os02g0667000 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 2.4e-14 82.0 79 54.4
THA.LOC104811443 Tarenaya hassleriana HOM05D007648 ORTHO05D009613 2.4e-14 82.0 76 52.6
Haze_22702 Corylus avellana HOM05D007648 ORTHO05D009613 3.2e-14 81.6 75 54.7
ECA238G3742 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.4e-14 80.9 72 52.8
Thhalv10019391m.g Eutrema salsugineum HOM05D007648 ORTHO05D009613 5.4e-14 80.9 80 48.8
CAN.G22.4 Capsicum annuum HOM05D007648 ORTHO05D009613 7.1e-14 80.5 77 51.9
BolC2t11627H Brassica oleracea HOM05D007648 ORTHO05D009613 9.2e-14 80.1 77 51.9
Migut.C00899 Erythranthe guttata HOM05D007648 ORTHO05D009613 1.6e-13 79.3 76 50.0
Sed0006121 Sechium edule HOM05D007648 ORTHO05D009613 1.6e-13 79.3 77 50.6
MBI05_g46751_MAGBIO Magnolia biondii HOM05D007648 ORTHO05D009613 2.1e-13 79.0 73 53.4
VMungo0647G0751 Vigna mungo HOM05D007648 ORTHO05D009613 2.1e-13 79.0 75 54.7
Aa31LG4G6180 Aethionema arabicum HOM05D007648 ORTHO05D009613 7.8e-13 77.0 76 47.4
PSO210G3155 Papaver somniferum HOM05D007648 ORTHO05D009613 3.9e-12 74.7 74 48.6
CAN.G22.7 Capsicum annuum HOM05D007648 ORTHO05D009613 1.9e-11 72.4 76 48.7
C02p55750 Brassica napus HOM05D007648 ORTHO05D009613 7.3e-11 70.5 61 55.7
Peaxi162Scf00394g00212 Petunia axillaris HOM05D007648 ORTHO05D009613 2.1e-10 68.9 65 53.8
Nitab4.5_0004193g0030 Nicotiana tabacum HOM05D000998 ORTHO05D000806 3.6e-10 68.2 66 51.5
A02p36690 Brassica napus HOM05D007648 ORTHO05D009613 6.2e-10 67.4 59 50.8
Nitab4.5_0000716g0050 Nicotiana tabacum HOM05D000998 ORTHO05D000806 5.3e-09 64.3 61 52.5
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.4e-08 61.6 130 32.3
PRCOL_00002456 Prasinoderma coloniale HOM05D007648 ORTHO05D009613 2.4e-06 55.5 79 38.0
AUR62013884 Chenopodium quinoa HOM05D007648 ORTHO05D009613 5.4e-06 54.3 44 54.5


User provided reference genes

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