Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 2.3e-277 958.4 529 100.0
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 5.6e-122 442.2 531 49.5
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.1e-109 401.4 493 49.7
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 5.5e-109 399.1 488 48.0
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 9.3e-109 398.3 533 46.5
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 3.0e-107 393.3 511 47.0
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 6.7e-107 392.1 537 46.9
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.1e-106 391.3 505 46.9
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 1.5e-106 391.0 487 47.4
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 1.9e-106 390.6 505 46.7
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.3e-105 387.9 418 51.4
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 3.7e-105 386.3 510 46.7
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 6.3e-105 385.6 510 46.7
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 8.2e-105 385.2 489 46.6
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.1e-104 384.8 488 48.2
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 6.9e-104 382.1 474 46.0
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 3.4e-103 379.8 485 46.4
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 3.4e-103 379.8 488 45.9
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 3.4e-103 379.8 530 46.0
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 4.5e-103 379.4 489 46.8
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 4.5e-103 379.4 524 45.6
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 4.5e-103 379.4 527 45.7
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 5.9e-103 379.0 490 45.9
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 7.7e-103 378.6 512 45.7
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 1.0e-102 378.3 529 45.2
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 3.8e-102 376.3 500 45.6
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 8.5e-102 375.2 489 45.6
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 5.5e-101 372.5 527 43.6
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 2.1e-100 370.5 538 45.7
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 2.7e-100 370.2 483 45.3
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 2.7e-100 370.2 509 45.8
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 3.6e-100 369.8 474 47.7
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 6.1e-100 369.0 512 45.5
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.0e-99 368.2 530 43.0
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 2.3e-99 367.1 517 46.0
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 3.0e-99 366.7 527 45.2
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 3.9e-99 366.3 489 46.0
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 3.9e-99 366.3 532 43.2
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 6.7e-99 365.5 486 46.1
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 6.7e-99 365.5 529 44.2
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 8.8e-99 365.2 485 45.6
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 8.8e-99 365.2 486 45.9
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 8.8e-99 365.2 488 45.3
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 8.8e-99 365.2 488 45.9
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 2.5e-98 363.6 480 46.7
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 4.3e-98 362.8 529 43.9
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 4.3e-98 362.8 529 43.9
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 5.7e-98 362.5 514 43.8
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.3e-97 361.3 514 43.6
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 8.2e-97 358.6 530 43.4
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 1.1e-96 358.2 519 44.3
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.1e-96 358.2 492 44.5
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 1.8e-96 357.5 528 42.4
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 2.4e-96 357.1 489 44.0
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 4.1e-96 356.3 484 44.8
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 9.1e-96 355.1 524 43.7
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 5.9e-95 352.4 495 44.8
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 7.7e-95 352.1 529 42.9
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 1.7e-94 350.9 549 42.3
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 3.8e-94 349.7 528 42.8
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 5.0e-94 349.4 511 42.7
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 5.0e-94 349.4 528 42.4
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 5.0e-94 349.4 490 43.1
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 1.1e-93 348.2 494 43.9
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 1.1e-93 348.2 494 43.9
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.9e-93 347.4 517 42.7
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 1.9e-93 347.4 482 44.0
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 2.5e-93 347.1 486 44.4
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 2.5e-93 347.1 415 47.0
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 3.2e-93 346.7 486 44.7
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 4.2e-93 346.3 527 42.5
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 4.2e-93 346.3 537 42.8
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 7.2e-93 345.5 528 44.1
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 9.4e-93 345.1 541 42.0
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 1.2e-92 344.7 537 41.7
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 2.1e-92 344.0 468 44.4
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 3.6e-92 343.2 528 41.3
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 4.7e-92 342.8 492 42.5
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 6.1e-92 342.4 417 47.2
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.3e-91 340.5 419 46.5
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 2.3e-91 340.5 429 46.2
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 3.0e-91 340.1 542 41.5
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 3.9e-91 339.7 414 47.1
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 5.1e-91 339.3 480 44.0
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 5.1e-91 339.3 489 42.7
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 6.7e-91 339.0 413 46.5
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.6e-90 337.0 463 45.6
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 4.4e-90 336.3 486 43.2
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 5.7e-90 335.9 528 41.7
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.3e-89 334.7 511 41.7
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 3.7e-89 333.2 526 42.8
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 6.3e-89 332.4 490 42.9
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 1.1e-88 331.6 420 45.5
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 1.4e-88 331.3 537 40.2
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 2.4e-88 330.5 500 44.2
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 1.2e-87 328.2 396 44.9
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 2.6e-87 327.0 526 40.3
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 2.2e-86 323.9 394 47.2
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.1e-85 321.6 386 46.6
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 7.2e-85 318.9 510 40.8
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 1.2e-84 318.2 409 45.0
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 2.1e-84 317.4 396 45.7
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 2.1e-84 317.4 379 50.4
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.0e-83 315.1 418 45.7
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 2.3e-83 313.9 575 38.3
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 2.6e-82 310.5 489 40.1
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.3e-82 310.1 417 44.4
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 3.1e-80 303.5 397 44.1
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 9.1e-80 302.0 292 55.5
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 3.5e-79 300.1 360 47.8
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 2.2e-78 297.4 525 39.2
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 3.2e-77 293.5 315 50.8
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.2e-73 280.8 412 41.7
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 7.0e-72 275.8 483 39.5
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 5.0e-70 269.6 357 46.8
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 3.6e-68 263.5 432 38.7
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 1.1e-64 251.9 408 39.5
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 7.7e-63 245.7 555 32.3
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.7e-55 220.7 322 46.6
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 1.2e-52 211.8 278 42.1
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.6e-52 211.5 278 42.1
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 1.2e-50 205.3 282 47.5
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 1.7e-46 191.4 309 40.8
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 1.5e-45 188.3 528 33.7
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 2.6e-42 177.6 389 37.8
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.3e-41 175.3 238 40.8
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 4.0e-35 153.7 188 51.6
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 4.4e-34 150.2 155 53.5
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 2.2e-33 147.9 327 37.6
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 8.3e-33 146.0 180 42.2
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 1.7e-22 111.7 190 46.8
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 1.1e-21 109.0 483 25.1
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 2.0e-18 98.2 146 39.0
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 3.4e-18 97.4 167 34.7
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 5.8e-18 96.7 155 41.9
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 7.1e-16 89.7 124 50.0
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.9e-13 81.6 122 48.4
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 3.6e-12 77.4 115 36.5
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 6.9e-11 73.2 135 37.8
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 3.4e-10 70.9 211 29.4
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 4.9e-09 67.0 109 35.8
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 4.9e-09 67.0 109 35.8
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 1.1e-08 65.9 113 46.9
Cre06.g302850 Chlamydomonas reinhardtii HOM05D004816 ORTHO05D006043 4.2e-08 63.9 182 26.9
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 4.6e-07 60.5 131 35.9
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 2.3e-06 58.2 55 43.6


User provided reference genes

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