Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 2793.8 1421 100.0
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1738.8 1383 63.2
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1723.0 1381 62.9
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1520.0 1326 58.4
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 1467.2 1392 55.0
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 1443.7 1401 53.2
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 1434.9 1387 53.6
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 1432.5 1382 53.4
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 1430.2 1387 53.5
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 1428.3 1386 53.2
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 1425.6 1413 52.9
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 1424.1 1387 53.1
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 1424.1 1383 53.2
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 1422.9 1417 52.6
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 1422.5 1385 53.3
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1421.8 1376 53.0
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 1420.6 1406 52.6
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 1420.6 1379 52.9
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 1419.8 1348 54.5
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1419.4 1384 53.0
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 1418.7 1382 53.0
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 1417.9 1380 53.4
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 1416.7 1414 52.6
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 1416.4 1383 53.3
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 1416.4 1415 51.9
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 1414.4 1364 53.6
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 1414.1 1408 52.6
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 1413.7 1406 52.8
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 1413.7 1383 53.1
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 1413.3 1384 52.9
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 1413.3 1373 52.9
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 1411.7 1404 52.7
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 1411.4 1387 53.0
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1410.6 1408 52.6
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 1409.8 1413 52.7
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 1409.4 1408 52.5
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 1409.0 1369 52.8
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 1408.7 1387 52.8
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 1408.3 1379 52.5
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 1407.5 1384 53.0
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 1407.5 1407 52.9
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 1406.3 1416 52.3
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 1406.0 1408 52.6
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 1405.2 1378 52.5
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1403.7 1382 52.8
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 1403.3 1351 53.3
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 1400.6 1397 51.8
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 1399.4 1403 52.6
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 1398.3 1355 53.4
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 1398.3 1382 52.6
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 1397.5 1359 52.4
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 1394.4 1381 52.4
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 1392.9 1401 51.4
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 1392.9 1384 52.1
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 1390.6 1420 51.5
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 1390.6 1375 52.6
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 1387.5 1380 52.7
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 1386.7 1248 55.4
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 1385.2 1363 52.2
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 1382.1 1395 51.3
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 1379.4 1367 51.4
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1378.6 1395 52.0
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 1375.9 1355 52.2
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1370.9 1392 51.1
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 1370.9 1395 51.1
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 1370.9 1393 51.2
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 1370.5 1266 53.9
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1370.5 1391 51.1
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 1368.6 1391 50.8
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1368.2 1393 51.0
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 1365.9 1366 51.4
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 1364.7 1381 51.3
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 1364.4 1495 49.0
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 1363.2 1386 50.9
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 1360.5 1454 50.2
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1360.1 1353 52.5
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1357.8 1402 51.0
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 1355.5 1381 51.8
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1354.7 1357 52.5
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 1326.2 1282 53.6
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1322.8 1371 51.1
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 1318.9 1170 55.6
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1318.5 1380 51.0
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 1316.2 1498 47.7
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1308.1 1382 50.3
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1288.1 1204 54.5
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 1283.1 1405 49.3
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1279.2 1367 49.7
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1271.5 1282 50.9
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1266.5 1431 48.9
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1206.8 1697 41.8
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1177.5 1369 47.1
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1113.6 1559 42.1
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 9.7e-312 1073.9 1122 49.6
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 7.4e-310 1067.8 829 62.6
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 3.8e-282 975.7 789 59.7
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 1.2e-248 864.4 956 48.1
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 1.6e-240 837.4 678 60.8
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 1.1e-236 824.7 1005 45.2
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.2e-222 778.1 912 46.7
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 2.4e-212 743.8 1480 31.6
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 4.2e-204 716.5 838 45.7
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.2e-195 688.3 579 60.1
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 3.4e-190 670.2 780 46.8
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 3.5e-179 633.6 823 43.7
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 6.7e-146 523.1 466 53.4
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 7.7e-142 509.6 431 58.2
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.3e-133 481.5 546 49.6
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.6e-123 448.7 629 42.0
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.9e-119 435.3 314 65.0
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 1.9e-100 372.1 473 42.9
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 4.0e-82 311.2 500 36.6
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.0e-82 311.2 192 77.1
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.8e-61 242.7 215 54.4
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 3.4e-57 228.4 258 47.7
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 4.3e-52 211.5 265 44.5
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 2.0e-41 176.0 145 59.3
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.2e-37 161.4 128 62.5
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 1.8e-34 152.9 142 52.8
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.0e-28 132.9 152 46.1
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 3.1e-26 125.6 324 29.9
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 4.5e-25 121.7 91 65.9
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 5.0e-24 118.2 112 53.6
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 3.2e-23 115.5 187 34.8
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 3.7e-19 102.1 107 48.6
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.1e-18 100.5 112 45.5
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 5.9e-17 94.7 115 42.6
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 8.6e-16 90.9 86 48.8
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 8.6e-16 90.9 85 55.3
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.0e-13 84.0 83 44.6
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 1.8e-13 83.2 150 38.0
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 2.3e-13 82.8 81 46.9
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 1.5e-12 80.1 128 35.2
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.4e-12 78.6 50 76.0
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.0e-09 69.7 100 37.0
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 2.9e-08 65.9 111 34.2
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.0e-08 65.1 47 63.8
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 45 62.2
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 2.5e-07 62.8 105 37.1
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 2.1e-06 59.7 42 61.9
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 2.8e-06 59.3 76 47.4


User provided reference genes

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