Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 3.4e-138 495.0 246 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 6.6e-41 171.8 234 39.7
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 6.4e-36 155.2 222 37.4
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 2.5e-32 143.3 225 36.0
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 4.3e-32 142.5 229 35.8
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 4.7e-31 139.0 239 31.4
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 4.7e-31 139.0 193 38.9
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 1.4e-30 137.5 227 32.2
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 3.1e-30 136.3 242 31.4
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 4.0e-30 136.0 242 31.8
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 2.0e-29 133.7 208 36.5
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 4.4e-29 132.5 242 31.8
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 7.6e-29 131.7 233 33.0
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 7.6e-29 131.7 231 33.8
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 7.6e-29 131.7 227 33.5
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 7.6e-29 131.7 236 32.6
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 2.9e-28 129.8 245 31.0
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.9e-28 129.8 227 30.0
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 6.4e-28 128.6 242 31.8
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 8.4e-28 128.3 229 29.7
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 1.1e-27 127.9 230 30.4
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 1.1e-27 127.9 230 30.4
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 1.1e-27 127.9 227 31.3
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 1.4e-27 127.5 230 33.5
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 1.9e-27 127.1 227 32.6
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 2.4e-27 126.7 227 30.0
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 2.4e-27 126.7 245 32.2
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 2.4e-27 126.7 252 31.3
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 3.2e-27 126.3 230 30.4
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 4.2e-27 125.9 230 31.3
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 5.4e-27 125.6 234 33.3
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 5.4e-27 125.6 245 30.6
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 5.4e-27 125.6 227 32.2
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 9.3e-27 124.8 230 31.7
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 9.3e-27 124.8 231 30.7
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 9.3e-27 124.8 227 29.1
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 1.6e-26 124.0 230 29.6
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 2.1e-26 123.6 227 30.8
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 2.1e-26 123.6 227 29.5
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.1e-26 123.6 230 29.6
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 2.1e-26 123.6 239 30.5
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 2.7e-26 123.2 228 30.3
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 2.7e-26 123.2 230 32.2
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 3.5e-26 122.9 227 30.4
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 3.5e-26 122.9 235 28.1
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 3.5e-26 122.9 235 28.1
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 3.5e-26 122.9 232 31.5
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 4.6e-26 122.5 227 30.4
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 4.6e-26 122.5 230 31.3
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 4.6e-26 122.5 233 32.2
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 6.0e-26 122.1 235 28.1
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 7.8e-26 121.7 230 28.3
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 7.8e-26 121.7 245 27.8
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 7.8e-26 121.7 241 30.7
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 1.0e-25 121.3 235 34.5
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 1.0e-25 121.3 235 34.5
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.0e-25 121.3 252 29.8
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 1.3e-25 120.9 235 34.5
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 1.3e-25 120.9 230 30.9
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 1.3e-25 120.9 230 30.9
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.7e-25 120.6 227 29.5
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 1.7e-25 120.6 240 30.4
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 2.3e-25 120.2 235 28.1
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 2.3e-25 120.2 230 30.0
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 3.0e-25 119.8 235 32.3
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 3.0e-25 119.8 227 29.1
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 3.9e-25 119.4 235 29.4
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 5.1e-25 119.0 231 31.2
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 5.1e-25 119.0 230 30.4
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 6.6e-25 118.6 231 32.0
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 6.6e-25 118.6 231 32.0
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 6.6e-25 118.6 230 30.9
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 8.7e-25 118.2 200 33.0
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 8.7e-25 118.2 227 29.1
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 8.7e-25 118.2 230 31.7
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 8.7e-25 118.2 230 29.6
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 1.1e-24 117.9 186 34.4
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 1.9e-24 117.1 230 31.3
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 1.9e-24 117.1 224 33.0
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 4.3e-24 115.9 227 30.8
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 4.3e-24 115.9 233 31.8
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 9.6e-24 114.8 186 32.8
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 2.8e-23 113.2 227 29.1
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 6.2e-23 112.1 227 28.6
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.1e-22 111.3 211 31.3
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 1.4e-22 110.9 211 31.3
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 1.8e-22 110.5 183 33.3
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 5.3e-22 109.0 186 31.2
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 6.9e-22 108.6 190 32.1
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 2.0e-21 107.1 241 27.0
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 4.5e-21 105.9 227 28.6
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 4.9e-20 102.4 160 33.8
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 2.1e-18 97.1 168 32.1
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 2.1e-18 97.1 160 31.2
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 1.3e-17 94.4 176 29.0
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 1.3e-17 94.4 160 30.6
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.8e-17 94.0 228 28.9
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 9.6e-16 88.2 191 30.4
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 2.4e-14 83.6 204 31.9
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.5e-13 80.9 120 34.2
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 2.6e-13 80.1 181 28.7
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 3.4e-13 79.7 203 27.1
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 3.2e-11 73.2 232 23.3
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 3.2e-11 73.2 136 30.1
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 2.1e-10 70.5 204 30.9
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 4.6e-10 69.3 133 29.3
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 7.9e-10 68.6 123 35.0
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.0e-09 68.2 164 29.9
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 2.3e-09 67.0 87 33.3
Nitab4.5_0000343g0050 Nicotiana tabacum HOM05D003252 ORTHO05D003640 5.1e-09 65.9 217 24.4
Solyc07g041490.3 Solanum lycopersicum HOM05D003252 ORTHO05D003640 6.7e-09 65.5 219 23.3
Sopen07g021020 Solanum pennellii HOM05D003252 ORTHO05D003640 8.7e-09 65.1 215 23.3
Aqoxy7G04119 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 1.1e-08 64.7 215 28.4
PGSC0003DMG400019568 Solanum tuberosum HOM05D003252 ORTHO05D003640 1.1e-08 64.7 215 23.3
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 2.5e-08 63.5 135 27.4
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.3e-08 63.2 196 25.5
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 7.4e-08 62.0 91 31.9
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 7.4e-08 62.0 227 25.6
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 7.4e-08 62.0 188 23.4
Sed0020871 Sechium edule HOM05D003252 ORTHO05D003640 7.4e-08 62.0 222 26.6
CAN.G198.16 Capsicum annuum HOM05D003252 ORTHO05D003640 1.3e-07 61.2 228 23.2
Cfa003021 Carpinus fangiana HOM05D003252 ORTHO05D003640 4.8e-07 59.3 228 23.7
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 4.8e-07 59.3 228 23.7
AL1G59220 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 6.2e-07 58.9 203 27.1
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 6.2e-07 58.9 186 25.3
Phvul.003G132200 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 6.2e-07 58.9 230 24.8
Ca_21312_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 8.1e-07 58.5 176 27.3
FAN23G1755 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.1e-06 58.2 190 28.4
AT1G51360 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 1.4e-06 57.8 231 25.5
Dinv25571 Davidia involucrata HOM05D003252 ORTHO05D003640 1.4e-06 57.8 233 27.5
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 1.8e-06 57.4 181 24.9
QL02p060441 Quercus lobata HOM05D003252 ORTHO05D003640 1.8e-06 57.4 232 24.6
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.4e-06 57.0 185 24.9
THA.LOC104815326 Tarenaya hassleriana HOM05D003252 ORTHO05D003640 2.4e-06 57.0 192 25.5
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 2.4e-06 57.0 201 24.4
ClCG11G001480 Citrullus lanatus HOM05D003252 ORTHO05D003640 3.1e-06 56.6 223 24.2
QL02p060735 Quercus lobata HOM05D003252 ORTHO05D003640 3.1e-06 56.6 232 24.1
Peaxi162Scf00073g00132 Petunia axillaris HOM05D003252 ORTHO05D003640 5.3e-06 55.8 217 24.0
Atru.chr7.1677 Acer truncatum HOM05D003252 ORTHO05D003640 6.9e-06 55.5 223 22.0


User provided reference genes

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