Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 1.5e-124 449.5 231 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 2.5e-50 203.0 178 57.9
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 7.3e-50 201.4 182 58.2
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.2e-49 200.7 161 60.9
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 2.1e-49 199.9 162 60.5
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 2.1e-49 199.9 162 60.5
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 2.8e-49 199.5 161 62.1
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 3.6e-49 199.1 135 68.9
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 3.6e-49 199.1 178 55.6
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 4.7e-49 198.7 166 61.4
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 6.2e-49 198.4 204 52.9
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 6.2e-49 198.4 216 52.3
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 8.1e-49 198.0 161 61.5
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 8.1e-49 198.0 162 60.5
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.1e-48 197.6 180 53.9
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.4e-48 197.2 159 61.6
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 1.4e-48 197.2 157 59.9
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 1.8e-48 196.8 155 60.6
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 2.4e-48 196.4 162 60.5
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 4.0e-48 195.7 171 57.3
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 5.2e-48 195.3 169 58.6
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 6.8e-48 194.9 152 61.8
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 6.8e-48 194.9 166 59.6
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 6.8e-48 194.9 186 55.9
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 6.8e-48 194.9 132 65.9
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 8.9e-48 194.5 194 55.2
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 8.9e-48 194.5 221 49.3
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 1.5e-47 193.7 204 53.4
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 2.0e-47 193.4 161 60.2
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 2.0e-47 193.4 132 68.2
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 2.0e-47 193.4 175 55.4
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 2.0e-47 193.4 168 59.5
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.6e-47 193.0 164 61.6
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 2.6e-47 193.0 186 53.8
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.6e-47 193.0 163 60.7
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.6e-47 193.0 163 60.7
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 2.6e-47 193.0 156 60.9
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 5.8e-47 191.8 161 60.9
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 5.8e-47 191.8 134 65.7
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 9.9e-47 191.0 171 58.5
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.3e-46 190.7 161 60.9
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.3e-46 190.7 161 60.9
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 1.3e-46 190.7 150 62.0
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.3e-46 190.7 168 58.3
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 1.3e-46 190.7 208 49.5
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 1.7e-46 190.3 152 60.5
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 2.2e-46 189.9 218 48.6
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 2.9e-46 189.5 132 67.4
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 3.8e-46 189.1 173 56.1
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.8e-46 189.1 153 58.2
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.8e-46 189.1 153 58.2
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 4.9e-46 188.7 200 50.5
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 4.9e-46 188.7 162 59.3
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 4.9e-46 188.7 166 56.6
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 6.4e-46 188.3 146 61.6
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 6.4e-46 188.3 173 54.9
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 6.4e-46 188.3 150 60.7
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 6.4e-46 188.3 179 55.9
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 8.4e-46 188.0 151 59.6
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 1.1e-45 187.6 163 58.9
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.1e-45 187.6 156 59.0
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.1e-45 187.6 170 58.2
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.1e-45 187.6 150 59.3
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 1.4e-45 187.2 186 54.8
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 1.4e-45 187.2 172 54.1
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.4e-45 187.2 187 53.5
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.4e-45 187.2 157 58.6
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 1.9e-45 186.8 175 54.9
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.9e-45 186.8 156 60.3
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 1.9e-45 186.8 142 62.0
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.9e-45 186.8 162 57.4
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.9e-45 186.8 158 57.0
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 2.4e-45 186.4 128 67.2
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 3.2e-45 186.0 226 46.9
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 3.2e-45 186.0 194 51.0
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.2e-45 186.0 226 48.2
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.2e-45 186.0 226 48.2
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 3.2e-45 186.0 171 55.6
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 3.2e-45 186.0 180 57.2
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 4.2e-45 185.7 159 56.0
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 9.2e-45 184.5 181 55.8
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 9.2e-45 184.5 160 55.6
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.2e-44 184.1 150 58.7
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.2e-44 184.1 232 48.7
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 1.6e-44 183.7 169 54.4
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 2.1e-44 183.3 162 56.8
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 3.5e-44 182.6 159 57.9
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 3.5e-44 182.6 159 57.2
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 3.5e-44 182.6 175 55.4
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 6.0e-44 181.8 172 57.0
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 7.8e-44 181.4 126 67.5
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 1.0e-43 181.0 224 46.4
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 1.3e-43 180.6 190 52.1
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.3e-43 180.6 145 60.0
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.7e-43 180.3 146 59.6
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 2.3e-43 179.9 210 51.0
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 3.0e-43 179.5 146 58.9
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 6.6e-43 178.3 190 51.6
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 8.7e-43 177.9 146 58.9
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 8.7e-43 177.9 146 58.2
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 8.7e-43 177.9 146 58.2
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 8.7e-43 177.9 146 58.2
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 1.1e-42 177.6 181 53.6
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.9e-42 176.8 148 60.1
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.9e-42 176.8 146 58.2
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 2.5e-42 176.4 205 49.8
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 2.5e-42 176.4 175 53.7
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 3.3e-42 176.0 172 55.8
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 9.6e-42 174.5 188 50.0
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 9.6e-42 174.5 188 50.0
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 3.6e-41 172.6 127 63.8
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 3.6e-41 172.6 127 64.6
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 3.6e-41 172.6 127 63.8
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 1.1e-40 171.0 120 67.5
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 1.4e-40 170.6 182 51.6
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.4e-39 165.6 150 55.3
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 7.6e-39 164.9 124 62.1
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 4.9e-38 162.2 167 50.3
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 8.4e-38 161.4 134 60.4
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.9e-37 160.2 145 59.3
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.0e-27 126.3 110 59.1
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 1.9e-26 123.6 163 44.8
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 4.3e-26 122.5 124 50.0
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 3.1e-24 116.3 141 43.3
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 6.9e-24 115.2 120 50.8
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 1.3e-22 110.9 119 49.6
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 2.2e-22 110.2 78 62.8
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 4.9e-22 109.0 77 63.6
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 4.9e-14 82.4 60 63.3
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 4.2e-13 79.3 91 46.2
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.8e-11 73.9 55 61.8
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 7.4e-10 68.6 50 64.0
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 7.4e-10 68.6 52 61.5
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 8.2e-09 65.1 65 55.4
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.8e-08 63.9 57 52.6
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.8e-08 63.9 45 55.6
Pp3c19_3370 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.4e-08 63.5 110 36.4
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 9.0e-08 61.6 44 63.6
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 3.8e-06 56.2 75 44.0
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 6.5e-06 55.5 33 75.8


User provided reference genes

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