Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0085s0083 Marchantia polymorpha HOM05D003309 ORTHO05D003810 5.6e-278 960.3 484 100.0
Pp3c3_18850 Physcomitrium patens HOM05D003309 ORTHO05D003810 6.8e-66 255.8 479 32.8
Pp3c11_23550 Physcomitrium patens HOM05D003309 ORTHO05D003810 5.4e-63 246.1 499 32.7
SEGI_00226 Sequoiadendron giganteum HOM05D003309 ORTHO05D003810 5.6e-60 236.1 464 33.0
Pp3c15_17540 Physcomitrium patens HOM05D003309 ORTHO05D003810 1.3e-45 188.3 510 29.4
SMO351G0154 Selaginella moellendorffii HOM05D003309 ORTHO05D003810 3.0e-45 187.2 476 29.4
Mapoly0001s0549 Marchantia polymorpha HOM05D003309 ORTHO05D003810 3.9e-45 186.8 491 27.7
Pp3c19_19870 Physcomitrium patens HOM05D003309 ORTHO05D003810 4.8e-43 179.9 489 28.8
Pp3c22_14270 Physcomitrium patens HOM05D003309 ORTHO05D003810 2.0e-41 174.5 488 29.5
SMO148G0002 Selaginella moellendorffii HOM05D003309 ORTHO05D003810 1.3e-40 171.8 495 27.3
Carub.0005s1903 Capsella rubella HOM05D003309 ORTHO05D003810 1.1e-39 168.7 482 29.5
C08p27900 Brassica napus HOM05D003309 ORTHO05D003810 3.2e-39 167.2 471 27.8
Sp5g09680 Schrenkiella parvula HOM05D003309 ORTHO05D003810 4.2e-39 166.8 490 28.4
BraA09t40031Z Brassica rapa HOM05D003309 ORTHO05D003810 7.1e-39 166.0 476 28.2
BolC8t50405H Brassica oleracea HOM05D003309 ORTHO05D003810 1.2e-38 165.2 471 27.6
AT3G52610 Arabidopsis thaliana HOM05D003309 ORTHO05D003810 1.6e-38 164.9 482 28.0
Nn2g14197 Nelumbo nucifera HOM05D003309 ORTHO05D003810 1.6e-38 164.9 485 26.8
BcaC07g39630 Brassica carinata HOM05D003309 ORTHO05D003810 2.7e-38 164.1 471 27.8
SEGI_22453 Sequoiadendron giganteum HOM05D003309 ORTHO05D003810 3.5e-38 163.7 493 26.8
Glyma.10G074600 Glycine max HOM05D003309 ORTHO05D003810 4.6e-38 163.3 474 28.1
A09p45700 Brassica napus HOM05D003309 ORTHO05D003810 6.0e-38 162.9 476 27.7
BcaB01g00353 Brassica carinata HOM05D003309 ORTHO05D003810 1.0e-37 162.2 470 28.7
Ciclev10011628m.g Citrus clementina HOM05D003309 ORTHO05D003810 1.3e-37 161.8 480 29.0
MD12G1027700 Malus domestica HOM05D003309 ORTHO05D003810 3.9e-37 160.2 474 28.9
Peaxi162Scf00166g01214 Petunia axillaris HOM05D003309 ORTHO05D003810 3.9e-37 160.2 478 27.4
AL5G33390 Arabidopsis lyrata HOM05D003309 ORTHO05D003810 5.1e-37 159.8 482 27.6
Thhalv10010329m.g Eutrema salsugineum HOM05D003309 ORTHO05D003810 5.1e-37 159.8 484 27.1
Glyma.02G202100 Glycine max HOM05D003309 ORTHO05D003810 5.1e-37 159.8 475 27.6
MSTRG.26632 Avicennia marina HOM05D003309 ORTHO05D003810 1.5e-36 158.3 475 30.7
CiPaw.10G010700 Carya illinoinensis HOM05D003309 ORTHO05D003810 1.5e-36 158.3 479 28.6
Duzib093G1779 Durio zibethinus HOM05D003309 ORTHO05D003810 1.9e-36 157.9 488 27.3
Atru.chr8.1472 Acer truncatum HOM05D003309 ORTHO05D003810 2.5e-36 157.5 471 27.2
Gorai.006G154100 Gossypium raimondii HOM05D003309 ORTHO05D003810 3.3e-36 157.1 487 27.1
Potri.006G210900 Populus trichocarpa HOM05D003309 ORTHO05D003810 3.3e-36 157.1 475 27.6
RcHm_v2.0_Chr3g0474311 Rosa chinensis HOM05D003309 ORTHO05D003810 5.6e-36 156.4 470 28.1
Gohir.A09G140200 Gossypium hirsutum HOM05D003309 ORTHO05D003810 7.4e-36 156.0 488 26.8
Cfa016628 Carpinus fangiana HOM05D003309 ORTHO05D003810 1.3e-35 155.2 477 26.6
CDE08G1063 Ceratophyllum demersum HOM05D003309 ORTHO05D003810 1.6e-35 154.8 471 25.1
CsaV3_3G037400 Cucumis sativus L. HOM05D003309 ORTHO05D003810 1.6e-35 154.8 265 34.3
Actinidia05415 Actinidia chinensis HOM05D003309 ORTHO05D003810 2.1e-35 154.5 474 27.8
Prupe.7G103900 Prunus persica HOM05D003309 ORTHO05D003810 2.1e-35 154.5 484 28.5
SalBow5G0001 Salvia bowleyana HOM05D003309 ORTHO05D003810 2.1e-35 154.5 474 26.6
Atru.chr8.1473 Acer truncatum HOM05D003309 ORTHO05D003810 2.8e-35 154.1 484 27.9
Thecc.05G092000 Theobroma cacao HOM05D003309 ORTHO05D003810 2.8e-35 154.1 484 27.7
TAR633G2357 Trochodendron aralioides HOM05D003309 ORTHO05D003810 3.7e-35 153.7 487 27.9
Ca_08899_v3 Cicer arietinum L. HOM05D003309 ORTHO05D003810 6.2e-35 152.9 468 28.4
Duzib128G0984 Durio zibethinus HOM05D003309 ORTHO05D003810 6.2e-35 152.9 488 26.6
CARHR162430 Cardamine hirsuta HOM05D003309 ORTHO05D003810 8.2e-35 152.5 482 27.0
CiPaw.09G015800 Carya illinoinensis HOM05D003309 ORTHO05D003810 8.2e-35 152.5 478 26.6
Manes.08G027000 Manihot esculenta HOM05D003309 ORTHO05D003810 8.2e-35 152.5 472 27.8
Sc02g0000360 Simmondsia chinensis HOM05D003309 ORTHO05D003810 8.2e-35 152.5 470 26.6
MELO3C009484.2 Cucumis melo HOM05D003309 ORTHO05D003810 1.1e-34 152.1 474 26.4
COL.COLO4_29697 Corchorus olitorius HOM05D003309 ORTHO05D003810 1.8e-34 151.4 505 27.1
Gohir.D09G134300 Gossypium hirsutum HOM05D003309 ORTHO05D003810 1.8e-34 151.4 488 26.4
Sabra16G0082500 Salix brachista HOM05D003309 ORTHO05D003810 1.8e-34 151.4 484 26.0
FvH4_6g19190 Fragaria vesca HOM05D003309 ORTHO05D003810 2.4e-34 151.0 477 28.5
FAN14G0655 Fragaria x ananassa HOM05D003309 ORTHO05D003810 3.1e-34 150.6 477 28.5
Medtr1g059760 Medicago truncatula HOM05D003309 ORTHO05D003810 3.1e-34 150.6 474 27.0
PGSC0003DMG400008869 Solanum tuberosum HOM05D003309 ORTHO05D003810 3.1e-34 150.6 483 27.1
HanXRQChr01g0010071 Helianthus annuus HOM05D003309 ORTHO05D003810 4.0e-34 150.2 474 27.8
Lj2C139T14 Lonicera japonica HOM05D003309 ORTHO05D003810 4.0e-34 150.2 471 27.4
Lj5g0008872 Lotus japonicus HOM05D003309 ORTHO05D003810 4.0e-34 150.2 470 27.0
Cfa016627 Carpinus fangiana HOM05D003309 ORTHO05D003810 5.3e-34 149.8 485 27.8
Duzib106G1259 Durio zibethinus HOM05D003309 ORTHO05D003810 5.3e-34 149.8 491 27.3
Lj2A140T57 Lonicera japonica HOM05D003309 ORTHO05D003810 5.3e-34 149.8 475 26.7
CAN.G397.69 Capsicum annuum HOM05D003309 ORTHO05D003810 6.9e-34 149.4 474 26.4
Gorai.009G400800 Gossypium raimondii HOM05D003309 ORTHO05D003810 9.0e-34 149.1 480 26.0
arahy.Tifrunner.gnm1.ann1.AZ092E Arachis hypogaea HOM05D003309 ORTHO05D003810 1.2e-33 148.7 478 25.7
arahy.Tifrunner.gnm1.ann1.ZQ0IV1 Arachis hypogaea HOM05D003309 ORTHO05D003810 1.2e-33 148.7 478 25.7
FAN05G4850 Fragaria x ananassa HOM05D003309 ORTHO05D003810 1.2e-33 148.7 476 28.4
Gohir.D04G098600 Gossypium hirsutum HOM05D003309 ORTHO05D003810 1.2e-33 148.7 480 26.0
CANSAT64G2227 Cannabis sativa HOM05D003309 ORTHO05D003810 1.5e-33 148.3 476 27.3
HanXRQChr09g0260051 Helianthus annuus HOM05D003309 ORTHO05D003810 1.5e-33 148.3 482 27.4
Thecc.05G091900 Theobroma cacao HOM05D003309 ORTHO05D003810 1.5e-33 148.3 473 27.7
ECA246G4112 Erigeron canadensis HOM05D003309 ORTHO05D003810 2.6e-33 147.5 476 26.5
Duzib106G1624 Durio zibethinus HOM05D003309 ORTHO05D003810 3.4e-33 147.1 488 26.0
FAN09G2352 Fragaria x ananassa HOM05D003309 ORTHO05D003810 3.4e-33 147.1 479 28.0
ECA248G0622 Erigeron canadensis HOM05D003309 ORTHO05D003810 4.5e-33 146.7 466 26.4
Lj1g0022515 Lotus japonicus HOM05D003309 ORTHO05D003810 4.5e-33 146.7 474 26.8
VMungo0720G2613 Vigna mungo HOM05D003309 ORTHO05D003810 4.5e-33 146.7 277 33.6
Duzib093G0087 Durio zibethinus HOM05D003309 ORTHO05D003810 5.8e-33 146.4 481 26.6
Dinv21187 Davidia involucrata HOM05D003309 ORTHO05D003810 7.6e-33 146.0 478 26.6
SEGI_02887 Sequoiadendron giganteum HOM05D003309 ORTHO05D003810 7.6e-33 146.0 491 25.9
Mapoly0001s0257 Marchantia polymorpha HOM05D003309 ORTHO05D003810 1.3e-32 145.2 484 25.6
Nitab4.5_0000692g0220 Nicotiana tabacum HOM05D003309 ORTHO05D003810 1.3e-32 145.2 478 25.7
Psat6g079680 Pisum sativum HOM05D003309 ORTHO05D003810 1.3e-32 145.2 264 34.5
MSTRG.10376 Avicennia marina HOM05D003309 ORTHO05D003810 1.7e-32 144.8 482 27.6
MSTRG.26631 Avicennia marina HOM05D003309 ORTHO05D003810 1.7e-32 144.8 475 27.8
Migut.L01793 Erythranthe guttata HOM05D003309 ORTHO05D003810 2.9e-32 144.1 469 27.9
Potri.016G078000 Populus trichocarpa HOM05D003309 ORTHO05D003810 2.9e-32 144.1 490 25.1
Solyc09g009990.4 Solanum lycopersicum HOM05D003309 ORTHO05D003810 2.9e-32 144.1 483 26.1
Aqoxy2G01092 Aquilegia oxysepala HOM05D003309 ORTHO05D003810 3.8e-32 143.7 483 26.7
Ca_00893_v3 Cicer arietinum L. HOM05D003309 ORTHO05D003810 3.8e-32 143.7 269 34.9
Oeu047853.1 Olea europaea HOM05D003309 ORTHO05D003810 3.8e-32 143.7 502 27.7
THA.LOC104799759 Tarenaya hassleriana HOM05D003309 ORTHO05D003810 3.8e-32 143.7 479 26.1
TWI53G1850 Tripterygium wilfordii HOM05D003309 ORTHO05D003810 3.8e-32 143.7 487 27.3
Prupe.7G103700 Prunus persica HOM05D003309 ORTHO05D003810 4.9e-32 143.3 484 26.9
CiPaw.09G015900 Carya illinoinensis HOM05D003309 ORTHO05D003810 6.5e-32 142.9 476 25.4
Oeu047852.1 Olea europaea HOM05D003309 ORTHO05D003810 6.5e-32 142.9 482 27.8
ClCG10G018830 Citrullus lanatus HOM05D003309 ORTHO05D003810 8.4e-32 142.5 472 25.4
ECA246G1476 Erigeron canadensis HOM05D003309 ORTHO05D003810 8.4e-32 142.5 487 26.1
Gorai.006G154200 Gossypium raimondii HOM05D003309 ORTHO05D003810 1.1e-31 142.1 485 26.2
Oeu056872.1 Olea europaea HOM05D003309 ORTHO05D003810 1.1e-31 142.1 471 26.5
Sed0025091 Sechium edule HOM05D003309 ORTHO05D003810 1.1e-31 142.1 482 27.0
HanXRQChr01g0010081 Helianthus annuus HOM05D003309 ORTHO05D003810 1.4e-31 141.7 464 26.3
Lsat_1_v5_gn_3_41420 Lactuca sativa HOM05D003309 ORTHO05D003810 1.4e-31 141.7 482 26.1
Cc06_g06030 Coffea canephora HOM05D003309 ORTHO05D003810 1.9e-31 141.4 480 26.7
FAN09G2679 Fragaria x ananassa HOM05D003309 ORTHO05D003810 2.5e-31 141.0 269 33.1
Gohir.D09G134400 Gossypium hirsutum HOM05D003309 ORTHO05D003810 2.5e-31 141.0 477 26.2
Nn6g34852 Nelumbo nucifera HOM05D003309 ORTHO05D003810 2.5e-31 141.0 509 26.3
Gohir.A09G140100 Gossypium hirsutum HOM05D003309 ORTHO05D003810 3.2e-31 140.6 486 26.1
Lalb_Chr02g0154851 Lupinus albus HOM05D003309 ORTHO05D003810 4.2e-31 140.2 474 26.4
Phvul.007G226900 Phaseolus vulgaris HOM05D003309 ORTHO05D003810 4.2e-31 140.2 269 33.5
SGA_v2.0_scaffold184G39973 Striga asiatica HOM05D003309 ORTHO05D003810 4.2e-31 140.2 472 26.7
Lsat_1_v5_gn_5_165181 Lactuca sativa HOM05D003309 ORTHO05D003810 9.3e-31 139.0 473 26.8
CAN.G78.106 Capsicum annuum HOM05D003309 ORTHO05D003810 2.1e-30 137.9 481 26.2
Haze_19632 Corylus avellana HOM05D003309 ORTHO05D003810 2.1e-30 137.9 492 26.0
Migut.L01795 Erythranthe guttata HOM05D003309 ORTHO05D003810 2.1e-30 137.9 485 26.8
Cpa.g.sc104.112 Carica papaya HOM05D003309 ORTHO05D003810 2.7e-30 137.5 480 26.0
Eucgr.A02649 Eucalyptus grandis HOM05D003309 ORTHO05D003810 2.7e-30 137.5 486 26.3
FAN02G1791 Fragaria x ananassa HOM05D003309 ORTHO05D003810 2.7e-30 137.5 279 32.6
CSS0018589 Camellia sinensis var. sinensis HOM05D003309 ORTHO05D003810 3.5e-30 137.1 268 32.5
HanXRQChr13g0388791 Helianthus annuus HOM05D003309 ORTHO05D003810 4.6e-30 136.7 482 26.6
Ah.15g090710 Amaranthus hybridus HOM05D003309 ORTHO05D003810 1.0e-29 135.6 485 27.2
CSS0011107 Camellia sinensis var. sinensis HOM05D003309 ORTHO05D003810 1.3e-29 135.2 473 26.6
AUR62006202 Chenopodium quinoa HOM05D003309 ORTHO05D003810 2.3e-29 134.4 268 32.1
Ca_09017_v3 Cicer arietinum L. HOM05D003309 ORTHO05D003810 2.3e-29 134.4 485 27.0
EL10Ac7g16898 Beta vulgaris HOM05D003309 ORTHO05D003810 3.0e-29 134.0 268 32.5
DCAR_013404 Daucus carota HOM05D003309 ORTHO05D003810 3.0e-29 134.0 471 25.5
arahy.Tifrunner.gnm1.ann1.3HD1EN Arachis hypogaea HOM05D003309 ORTHO05D003810 5.1e-29 133.3 267 33.0
Ciclev10011692m.g Citrus clementina HOM05D003309 ORTHO05D003810 5.1e-29 133.3 468 25.4
GSVIVG01033869001 Vitis vinifera HOM05D003309 ORTHO05D003810 6.7e-29 132.9 479 26.5
Nn2g14195 Nelumbo nucifera HOM05D003309 ORTHO05D003810 8.7e-29 132.5 490 26.9
Phvul.007G226800 Phaseolus vulgaris HOM05D003309 ORTHO05D003810 8.7e-29 132.5 476 27.5
CSS0033394 Camellia sinensis var. sinensis HOM05D003309 ORTHO05D003810 1.1e-28 132.1 475 26.1
PGR004G0572 Punica granatum HOM05D003309 ORTHO05D003810 1.1e-28 132.1 480 26.0
HPP92_011906 Vanilla planifolia HOM05D003309 ORTHO05D003810 1.1e-28 132.1 471 25.1
arahy.Tifrunner.gnm1.ann1.MYHZ2L Arachis hypogaea HOM05D003309 ORTHO05D003810 1.9e-28 131.3 269 31.6
arahy.Tifrunner.gnm1.ann1.Q0CWXY Arachis hypogaea HOM05D003309 ORTHO05D003810 1.9e-28 131.3 474 24.3
Psat6g079760 Pisum sativum HOM05D003309 ORTHO05D003810 1.9e-28 131.3 329 30.1
PSO339G5731 Papaver somniferum HOM05D003309 ORTHO05D003810 2.5e-28 131.0 264 29.5
Hund19910 Selenicereus undatus HOM05D003309 ORTHO05D003810 2.5e-28 131.0 268 31.0
COL.COLO4_29696 Corchorus olitorius HOM05D003309 ORTHO05D003810 3.3e-28 130.6 488 26.2
HanXRQChr17g0542701 Helianthus annuus HOM05D003309 ORTHO05D003810 3.3e-28 130.6 475 25.9
Sed0024944 Sechium edule HOM05D003309 ORTHO05D003810 3.3e-28 130.6 263 27.8
Aa31LG10G7680 Aethionema arabicum HOM05D003309 ORTHO05D003810 5.7e-28 129.8 493 24.7
MD12G1027900 Malus domestica HOM05D003309 ORTHO05D003810 3.7e-27 127.1 476 24.2
PSO801G0276 Papaver somniferum HOM05D003309 ORTHO05D003810 3.7e-27 127.1 480 23.3
TPR.G14767 Trifolium pratense HOM05D003309 ORTHO05D003810 6.3e-27 126.3 210 38.6
TPR.G23320 Trifolium pratense HOM05D003309 ORTHO05D003810 1.1e-26 125.6 477 23.9
Prupe.7G103800 Prunus persica HOM05D003309 ORTHO05D003810 1.4e-26 125.2 474 23.8
GSVIVG01033870001 Vitis vinifera HOM05D003309 ORTHO05D003810 3.1e-26 124.0 267 30.3
HPP92_013813 Vanilla planifolia HOM05D003309 ORTHO05D003810 4.1e-26 123.6 489 24.9
Sabra06G0162400 Salix brachista HOM05D003309 ORTHO05D003810 9.0e-26 122.5 207 36.7
AUR62037016 Chenopodium quinoa HOM05D003309 ORTHO05D003810 1.2e-25 122.1 214 36.0
QL07p038577 Quercus lobata HOM05D003309 ORTHO05D003810 1.5e-25 121.7 203 36.0
Cfa016629 Carpinus fangiana HOM05D003309 ORTHO05D003810 3.4e-25 120.6 222 32.9
Rhsim03G0073900 Rhododendron simsii HOM05D003309 ORTHO05D003810 3.4e-25 120.6 517 24.8
Cc06_g06050 Coffea canephora HOM05D003309 ORTHO05D003810 4.5e-25 120.2 262 29.0
Lsat_1_v5_gn_3_41461 Lactuca sativa HOM05D003309 ORTHO05D003810 4.5e-25 120.2 474 25.7
arahy.Tifrunner.gnm1.ann1.F1289G Arachis hypogaea HOM05D003309 ORTHO05D003810 7.7e-25 119.4 264 31.8
vmacro07420 Vaccinium macrocarpon HOM05D003309 ORTHO05D003810 7.7e-25 119.4 512 25.2
ClCG10G018820 Citrullus lanatus HOM05D003309 ORTHO05D003810 1.3e-24 118.6 475 24.0
Zm00001eb366820 Zea mays HOM05D003309 ORTHO05D003810 1.7e-24 118.2 266 29.3
Os01g0861900 Oryza sativa ssp. japonica HOM05D003309 ORTHO05D003810 2.2e-24 117.9 477 23.9
arahy.Tifrunner.gnm1.ann1.33QXTL Arachis hypogaea HOM05D003309 ORTHO05D003810 1.9e-23 114.8 473 22.8
CsaV3_3G037410 Cucumis sativus L. HOM05D003309 ORTHO05D003810 1.9e-23 114.8 477 23.9
MELO3C009485.2 Cucumis melo HOM05D003309 ORTHO05D003810 9.4e-23 112.5 477 23.9
SalBow5G0700 Salvia bowleyana HOM05D003309 ORTHO05D003810 6.3e-19 99.8 177 33.9
Psat3g031960 Pisum sativum HOM05D003309 ORTHO05D003810 9.1e-18 95.9 201 32.3
Cpa.g.sc104.111 Carica papaya HOM05D003309 ORTHO05D003810 1.0e-16 92.4 479 23.2
TPR.G882 Trifolium pratense HOM05D003309 ORTHO05D003810 1.0e-16 92.4 141 35.5
Potri.006G210800 Populus trichocarpa HOM05D003309 ORTHO05D003810 8.5e-16 89.4 147 35.4
Pp3c18_15210 Physcomitrium patens HOM05D003309 ORTHO05D003810 2.7e-06 57.8 186 25.8


User provided reference genes

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