Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 2.4e-30 134.8 65 100.0
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 6.9e-14 80.1 56 67.9
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 1.2e-13 79.3 56 66.1
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 1.0e-12 76.3 51 72.5
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 1.7e-12 75.5 56 58.9
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 1.7e-12 75.5 56 64.3
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 2.2e-12 75.1 56 57.1
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 2.2e-12 75.1 56 62.5
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 2.9e-12 74.7 56 60.7
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 2.9e-12 74.7 56 60.7
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 2.9e-12 74.7 51 70.6
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 3.8e-12 74.3 56 60.7
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 3.8e-12 74.3 56 60.7
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 5.0e-12 73.9 56 60.7
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 5.0e-12 73.9 56 60.7
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 5.0e-12 73.9 56 62.5
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 6.5e-12 73.6 56 58.9
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 8.4e-12 73.2 56 60.7
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 8.4e-12 73.2 56 60.7
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 8.4e-12 73.2 56 58.9
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 8.4e-12 73.2 56 57.1
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 8.4e-12 73.2 59 55.9
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 1.1e-11 72.8 54 61.1
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.1e-11 72.8 56 57.1
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 1.1e-11 72.8 56 60.7
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 1.1e-11 72.8 56 57.1
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 1.1e-11 72.8 56 60.7
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 1.4e-11 72.4 56 58.9
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.4e-11 72.4 56 60.7
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 1.4e-11 72.4 56 57.1
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 2.5e-11 71.6 56 58.9
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 2.5e-11 71.6 56 57.1
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 2.5e-11 71.6 56 58.9
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 2.5e-11 71.6 56 55.4
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 2.5e-11 71.6 59 52.5
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 3.2e-11 71.2 54 55.6
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 3.2e-11 71.2 56 57.1
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 3.2e-11 71.2 56 58.9
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 3.2e-11 71.2 56 57.1
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 3.2e-11 71.2 56 57.1
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 4.2e-11 70.9 56 55.4
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 4.2e-11 70.9 59 54.2
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 4.2e-11 70.9 61 52.5
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 4.2e-11 70.9 56 58.9
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 4.2e-11 70.9 56 55.4
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 5.5e-11 70.5 56 55.4
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 5.5e-11 70.5 56 57.1
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 5.5e-11 70.5 56 58.9
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 7.2e-11 70.1 56 57.1
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 9.3e-11 69.7 56 55.4
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 9.3e-11 69.7 56 55.4
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 9.3e-11 69.7 56 55.4
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 9.3e-11 69.7 56 55.4
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 9.3e-11 69.7 56 60.7
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 9.3e-11 69.7 56 53.6
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 9.3e-11 69.7 56 55.4
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 9.3e-11 69.7 56 55.4
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 9.3e-11 69.7 56 58.9
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 9.3e-11 69.7 54 57.4
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 1.2e-10 69.3 56 57.1
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 1.2e-10 69.3 56 57.1
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 1.2e-10 69.3 56 57.1
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.2e-10 69.3 56 55.4
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.2e-10 69.3 56 55.4
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.2e-10 69.3 56 55.4
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 1.2e-10 69.3 56 53.6
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 1.2e-10 69.3 56 55.4
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 1.6e-10 68.9 56 57.1
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 1.6e-10 68.9 56 51.8
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 1.6e-10 68.9 56 53.6
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 1.6e-10 68.9 56 55.4
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 1.6e-10 68.9 56 51.8
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 1.6e-10 68.9 56 57.1
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 2.1e-10 68.6 56 55.4
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 2.1e-10 68.6 56 55.4
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 2.1e-10 68.6 56 57.1
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.1e-10 68.6 56 58.9
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.1e-10 68.6 56 58.9
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 2.1e-10 68.6 56 53.6
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 2.1e-10 68.6 56 58.9
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 2.1e-10 68.6 56 55.4
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.7e-10 68.2 56 55.4
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.7e-10 68.2 56 55.4
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.7e-10 68.2 56 55.4
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.7e-10 68.2 56 55.4
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.7e-10 68.2 56 55.4
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 2.7e-10 68.2 54 57.4
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 3.5e-10 67.8 58 53.4
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 4.6e-10 67.4 56 55.4
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 4.6e-10 67.4 56 55.4
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 4.6e-10 67.4 56 50.0
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 6.1e-10 67.0 56 51.8
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 6.1e-10 67.0 56 53.6
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 6.1e-10 67.0 56 53.6
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 6.1e-10 67.0 56 55.4
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 6.1e-10 67.0 56 55.4
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 6.1e-10 67.0 56 57.1
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 6.1e-10 67.0 56 53.6
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 7.9e-10 66.6 56 50.0
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 7.9e-10 66.6 56 55.4
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 7.9e-10 66.6 58 53.4
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 7.9e-10 66.6 56 51.8
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 7.9e-10 66.6 56 55.4
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 7.9e-10 66.6 56 55.4
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 7.9e-10 66.6 56 51.8
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 7.9e-10 66.6 56 53.6
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 7.9e-10 66.6 56 57.1
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 1.0e-09 66.2 56 53.6
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 1.0e-09 66.2 56 51.8
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 1.0e-09 66.2 56 53.6
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 55.4
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 55.4
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 51.8
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 51.8
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 1.3e-09 65.9 56 53.6
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 1.8e-09 65.5 56 53.6
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 1.8e-09 65.5 56 53.6
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.8e-09 65.5 53 58.5
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 1.8e-09 65.5 56 51.8
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 2.3e-09 65.1 56 55.4
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 2.3e-09 65.1 56 50.0
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 2.3e-09 65.1 56 53.6
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 3.0e-09 64.7 56 51.8
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 3.0e-09 64.7 56 51.8
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 3.0e-09 64.7 56 53.6
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 3.0e-09 64.7 56 51.8
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 3.9e-09 64.3 56 50.0
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 6.7e-09 63.5 56 53.6
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 8.7e-09 63.2 47 59.6
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 8.7e-09 63.2 56 53.6
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 8.7e-09 63.2 56 53.6
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 1.1e-08 62.8 56 51.8
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 1.5e-08 62.4 47 61.7
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.5e-08 61.6 56 51.8
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.5e-08 61.6 56 48.2
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.5e-08 61.6 56 51.8
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.5e-08 61.6 56 51.8
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.5e-08 61.6 56 48.2
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.5e-08 61.6 56 48.2
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 2.5e-08 61.6 56 55.4
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 5.7e-08 60.5 44 61.4
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 1.3e-07 59.3 45 55.6
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.6e-07 58.9 56 50.0
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 1.6e-07 58.9 56 51.8
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 1.6e-07 58.9 44 56.8
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 3.7e-07 57.8 56 48.2
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 3.7e-07 57.8 56 50.0
Pp3c19_5160 Physcomitrium patens HOM05D004126 ORTHO05D004818 6.3e-07 57.0 58 50.0
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 1.8e-06 55.5 47 59.6
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 1.8e-06 55.5 44 54.5
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 2.4e-06 55.1 44 50.0
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 3.1e-06 54.7 43 55.8
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 4.1e-06 54.3 50 54.0


User provided reference genes

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