Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0085s0010 Marchantia polymorpha HOM05D000168 ORTHO05D001118 1.7e-70 269.6 180 100.0
Haze_21901 Corylus avellana HOM05D000029 ORTHO05D008509 4.9e-09 65.5 85 37.6
HanXRQChr06g0178291 Helianthus annuus HOM05D000168 ORTHO05D001118 1.9e-08 63.5 108 36.1
AagrBONN_evm.TU.Sc2ySwM_362.1631 Anthoceros agrestis HOM05D000168 ORTHO05D001351 2.4e-08 63.2 101 39.6
CAN.G2049.1 Capsicum annuum HOM05D002919 ORTHO05D003327 2.4e-08 63.2 110 31.8
HanXRQChr09g0260581 Helianthus annuus HOM05D002919 ORTHO05D003327 3.2e-08 62.8 76 42.1
LjContig00564g0020705 Lotus japonicus HOM05D000168 ORTHO05D001118 4.1e-08 62.4 75 46.7
Sed0015355 Sechium edule HOM05D000168 ORTHO05D001351 4.1e-08 62.4 75 44.0
Sopen02g029080 Solanum pennellii HOM05D002919 ORTHO05D003327 4.1e-08 62.4 110 31.8
Pp3c26_8100 Physcomitrium patens HOM05D000094 ORTHO05D002388 5.4e-08 62.0 106 33.0
Solyc04g081080.1 Solanum lycopersicum HOM05D002919 ORTHO05D003327 5.4e-08 62.0 106 33.0
PGSC0003DMG400003551 Solanum tuberosum HOM05D002919 ORTHO05D003327 5.4e-08 62.0 110 31.8
Lalb_Chr07g0189481 Lupinus albus HOM05D000168 ORTHO05D001351 7.0e-08 61.6 76 44.7
Manes.02G102100 Manihot esculenta HOM05D002919 ORTHO05D003327 9.2e-08 61.2 82 39.0
Sopen04g034700 Solanum pennellii HOM05D002919 ORTHO05D003327 9.2e-08 61.2 104 33.7
Ciclev10027485m.g Citrus clementina HOM05D000168 ORTHO05D001351 1.2e-07 60.8 75 45.3
MBI05_g32510_MAGBIO Magnolia biondii HOM05D000168 ORTHO05D001118 1.2e-07 60.8 78 43.6
QL04p017611 Quercus lobata HOM05D000029 ORTHO05D002162 1.2e-07 60.8 86 40.7
Solyc02g084370.2 Solanum lycopersicum HOM05D002919 ORTHO05D003327 1.2e-07 60.8 95 33.7
Lsat_1_v5_gn_4_152881 Lactuca sativa HOM05D002919 ORTHO05D003327 1.6e-07 60.5 81 38.3
Rhsim08G0034800 Rhododendron simsii HOM05D002919 ORTHO05D003327 1.6e-07 60.5 95 34.7
SMO147G0081 Selaginella moellendorffii HOM05D000029 ORTHO05D000010 1.6e-07 60.5 95 41.1
Atru.chr2.1840 Acer truncatum HOM05D000029 ORTHO05D002162 2.7e-07 59.7 86 38.4
AUR62019156 Chenopodium quinoa HOM05D002919 ORTHO05D003327 3.5e-07 59.3 109 34.9
Duzib128G0627 Durio zibethinus HOM05D000761 ORTHO05D001062 3.5e-07 59.3 106 34.9
Gohir.A06G162300 Gossypium hirsutum HOM05D000761 ORTHO05D001062 3.5e-07 59.3 106 35.8
TPR.G30578 Trifolium pratense HOM05D000168 ORTHO05D001118 3.5e-07 59.3 103 35.9
VMungo0251G1479 Vigna mungo HOM05D002919 ORTHO05D003327 3.5e-07 59.3 104 35.6
Glyma.16G078900 Glycine max HOM05D000029 ORTHO05D001072 4.6e-07 58.9 105 34.3
FAN25G0006 Fragaria x ananassa HOM05D000029 ORTHO05D002494 6.0e-07 58.5 88 42.0
Sed0001857 Sechium edule HOM05D000168 ORTHO05D373336 6.0e-07 58.5 75 41.3
CSS0014908 Camellia sinensis var. sinensis HOM05D000761 ORTHO05D001062 7.8e-07 58.2 103 33.0
CSS0038507 Camellia sinensis var. sinensis HOM05D000761 ORTHO05D001062 7.8e-07 58.2 103 33.0
AUR62043929 Chenopodium quinoa HOM05D002919 ORTHO05D003327 7.8e-07 58.2 109 34.9
ECA240G0879 Erigeron canadensis HOM05D000168 ORTHO05D001118 7.8e-07 58.2 76 43.4
ECA240G4689 Erigeron canadensis HOM05D000046 ORTHO05D000195 7.8e-07 58.2 110 33.6
Mapoly0042s0061 Marchantia polymorpha HOM05D000029 ORTHO05D006246 7.8e-07 58.2 86 37.2
Mapoly0560s0001 Marchantia polymorpha HOM05D000168 ORTHO05D001351 7.8e-07 58.2 104 36.5
Hund29257 Selenicereus undatus HOM05D000168 ORTHO05D001942 7.8e-07 58.2 99 31.3
PGSC0003DMG400003714 Solanum tuberosum HOM05D002919 ORTHO05D003327 7.8e-07 58.2 79 36.7
ATR0564G182 Amborella trichopoda HOM05D000168 ORTHO05D001351 1.0e-06 57.8 96 37.5
Dinv40066 Davidia involucrata HOM05D002919 ORTHO05D003327 1.0e-06 57.8 85 34.1
Medtr1g097160 Medicago truncatula HOM05D000168 ORTHO05D001351 1.0e-06 57.8 79 41.8
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.0e-06 57.8 79 41.8
SEGI_23030 Sequoiadendron giganteum HOM05D000168 ORTHO05D001118 1.0e-06 57.8 78 42.3
PGSC0003DMG400031103 Solanum tuberosum HOM05D000029 ORTHO05D002162 1.0e-06 57.8 102 37.3
Thecc.08G194700 Theobroma cacao HOM05D000029 ORTHO05D006810 1.0e-06 57.8 114 35.1
CiPaw.06G151400 Carya illinoinensis HOM05D000168 ORTHO05D001351 1.3e-06 57.4 100 38.0
MBI19_g23693_MAGBIO Magnolia biondii HOM05D000517 ORTHO05D000751 1.3e-06 57.4 100 34.0
Mapoly0006s0308 Marchantia polymorpha HOM05D000029 ORTHO05D006280 1.3e-06 57.4 108 32.4
Oeu036930.1 Olea europaea HOM05D002919 ORTHO05D003327 1.3e-06 57.4 88 38.6
TWI77G0674 Tripterygium wilfordii HOM05D000517 ORTHO05D000751 1.3e-06 57.4 95 33.7
arahy.Tifrunner.gnm1.ann1.0P48VX Arachis hypogaea HOM05D000168 ORTHO05D001118 1.7e-06 57.0 93 37.6
arahy.Tifrunner.gnm1.ann1.LE9GDG Arachis hypogaea HOM05D000168 ORTHO05D001118 1.7e-06 57.0 93 37.6
CiPaw.06G151500 Carya illinoinensis HOM05D000168 ORTHO05D001351 1.7e-06 57.0 100 37.0
Gorai.010G195700 Gossypium raimondii HOM05D000761 ORTHO05D001062 1.7e-06 57.0 106 34.0
vmacro00972 Vaccinium macrocarpon HOM05D000029 ORTHO05D006810 1.7e-06 57.0 87 40.2
vmacro23492 Vaccinium macrocarpon HOM05D002919 ORTHO05D003327 1.7e-06 57.0 95 34.7
HPP92_016805 Vanilla planifolia HOM05D000168 ORTHO05D001351 1.7e-06 57.0 103 35.0
Zm00001eb229700 Zea mays HOM05D000029 ORTHO05D003419 1.7e-06 57.0 115 33.9
AUR62014420 Chenopodium quinoa HOM05D002919 ORTHO05D003327 2.3e-06 56.6 82 35.4
Migut.B00633 Erythranthe guttata HOM05D000168 ORTHO05D001351 2.3e-06 56.6 97 37.1
FAN07G2624 Fragaria x ananassa HOM05D000517 ORTHO05D000751 2.3e-06 56.6 105 30.5
Glyma.15G051600 Glycine max HOM05D000168 ORTHO05D001351 2.3e-06 56.6 79 43.0
Manes.10G009600 Manihot esculenta HOM05D000761 ORTHO05D001062 2.3e-06 56.6 104 33.7
Psat1g218160 Pisum sativum HOM05D000168 ORTHO05D001351 2.3e-06 56.6 104 36.5
Sed0026817 Sechium edule HOM05D000168 ORTHO05D001351 2.3e-06 56.6 75 42.7
Solyc06g051030.3 Solanum lycopersicum HOM05D000761 ORTHO05D001062 2.3e-06 56.6 84 35.7
CANSAT01G1701 Cannabis sativa HOM05D002919 ORTHO05D003327 3.0e-06 56.2 76 36.8
AUR62019157 Chenopodium quinoa HOM05D002919 ORTHO05D003327 3.0e-06 56.2 94 35.1
Cc01_g14620 Coffea canephora HOM05D000761 ORTHO05D001062 3.0e-06 56.2 82 40.2
HanXRQChr07g0203101 Helianthus annuus HOM05D000761 ORTHO05D001062 3.0e-06 56.2 88 35.2
Lsat_1_v5_gn_7_79861 Lactuca sativa HOM05D000168 ORTHO05D001351 3.0e-06 56.2 100 37.0
Lsat_1_v5_gn_9_117641 Lactuca sativa HOM05D000168 ORTHO05D001351 3.0e-06 56.2 98 36.7
Medtr2g008360 Medicago truncatula HOM05D000168 ORTHO05D001351 3.0e-06 56.2 106 34.9
Nitab4.5_0005663g0020 Nicotiana tabacum HOM05D000168 ORTHO05D001118 3.0e-06 56.2 101 37.6
Prupe.3G244900 Prunus persica HOM05D000168 ORTHO05D000811 3.0e-06 56.2 115 34.8
Hund24885 Selenicereus undatus HOM05D000053 ORTHO05D008832 3.0e-06 56.2 83 36.1
SEGI_29593 Sequoiadendron giganteum HOM05D000168 ORTHO05D008832 3.0e-06 56.2 96 37.5
Sopen10g017310 Solanum pennellii HOM05D000168 ORTHO05D001351 3.0e-06 56.2 101 37.6
SGA_v2.0_scaffold60G20970 Striga asiatica HOM05D000761 ORTHO05D001062 3.0e-06 56.2 109 33.0
HPP92_007855 Vanilla planifolia HOM05D000168 ORTHO05D001118 3.0e-06 56.2 100 35.0
Zm00001eb414790 Zea mays HOM05D000168 ORTHO05D001351 3.0e-06 56.2 78 41.0
C04p69610 Brassica napus HOM05D000033 ORTHO05D007591 3.9e-06 55.8 108 28.7
BolC4t28459H Brassica oleracea HOM05D000033 ORTHO05D007591 3.9e-06 55.8 108 28.7
BraA04t17448Z Brassica rapa HOM05D000168 ORTHO05D001351 3.9e-06 55.8 80 41.2
Glyma.08G074500 Glycine max HOM05D000168 ORTHO05D001351 3.9e-06 55.8 103 33.0
Gohir.A05G101700 Gossypium hirsutum HOM05D000168 ORTHO05D001118 3.9e-06 55.8 100 36.0
Gohir.D06G167800 Gossypium hirsutum HOM05D000761 ORTHO05D001062 3.9e-06 55.8 106 34.0
Lsat_1_v5_gn_4_5201 Lactuca sativa HOM05D000168 ORTHO05D000811 3.9e-06 55.8 101 34.7
Lj6g0001211 Lotus japonicus HOM05D000168 ORTHO05D001351 3.9e-06 55.8 106 34.9
Peaxi162Scf00220g00118 Petunia axillaris HOM05D000168 ORTHO05D001118 3.9e-06 55.8 78 42.3
PGR042G3084 Punica granatum HOM05D000517 ORTHO05D000751 3.9e-06 55.8 103 35.9
Solyc10g047140.2 Solanum lycopersicum HOM05D000168 ORTHO05D001351 3.9e-06 55.8 101 37.6
HPP92_013126 Vanilla planifolia HOM05D000517 ORTHO05D000751 3.9e-06 55.8 52 46.2
Zm00001eb244860 Zea mays HOM05D000168 ORTHO05D001351 3.9e-06 55.8 77 40.3
arahy.Tifrunner.gnm1.ann1.YY2SNP Arachis hypogaea HOM05D000168 ORTHO05D001351 5.0e-06 55.5 98 36.7
A04p32120 Brassica napus HOM05D000033 ORTHO05D007591 5.0e-06 55.5 108 28.7
BraA04t18666Z Brassica rapa HOM05D000033 ORTHO05D007591 5.0e-06 55.5 108 28.7
AUR62035434 Chenopodium quinoa HOM05D000168 ORTHO05D001351 5.0e-06 55.5 95 38.9
AUR62035721 Chenopodium quinoa HOM05D000168 ORTHO05D001351 5.0e-06 55.5 95 38.9
ClCG07G009300 Citrullus lanatus HOM05D000168 ORTHO05D001351 5.0e-06 55.5 98 36.7
Haze_12473 Corylus avellana HOM05D000168 ORTHO05D001118 5.0e-06 55.5 99 36.4
Duzib114G0028 Durio zibethinus HOM05D000761 ORTHO05D001062 5.0e-06 55.5 106 34.0
Duzib150G0048 Durio zibethinus HOM05D000071 ORTHO05D000029 5.0e-06 55.5 85 41.2
FvH4_4g33171 Fragaria vesca HOM05D000517 ORTHO05D000751 5.0e-06 55.5 105 35.2
FAN12G2132 Fragaria x ananassa HOM05D000517 ORTHO05D000751 5.0e-06 55.5 105 35.2
Glyma.08G180800 Glycine max HOM05D000168 ORTHO05D001351 5.0e-06 55.5 78 42.3
Medtr1g052425 Medicago truncatula HOM05D000033 ORTHO05D007591 5.0e-06 55.5 105 33.3
Oeu003283.1 Olea europaea HOM05D000168 ORTHO05D001118 5.0e-06 55.5 108 34.3
Pp3c3_28520 Physcomitrium patens HOM05D000033 ORTHO05D002478 5.0e-06 55.5 88 39.8
Hund06388 Selenicereus undatus HOM05D000517 ORTHO05D000751 5.0e-06 55.5 105 33.3
Hund27728 Selenicereus undatus HOM05D000168 ORTHO05D000079 5.0e-06 55.5 75 37.3
Hund27732 Selenicereus undatus HOM05D000168 ORTHO05D000079 5.0e-06 55.5 75 37.3
TPR.G13619 Trifolium pratense HOM05D000168 ORTHO05D001351 5.0e-06 55.5 103 36.9
AT1G34210 Arabidopsis thaliana HOM05D000168 ORTHO05D001351 6.6e-06 55.1 100 36.0
CSS0003369 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 6.6e-06 55.1 109 35.8
Carub.0003s2821 Capsella rubella HOM05D000168 ORTHO05D001351 6.6e-06 55.1 109 34.9
Haze_10249 Corylus avellana HOM05D000168 ORTHO05D001118 6.6e-06 55.1 92 35.9
Haze_10757 Corylus avellana HOM05D000168 ORTHO05D001351 6.6e-06 55.1 103 37.9
Gohir.D05G101400 Gossypium hirsutum HOM05D000168 ORTHO05D001118 6.6e-06 55.1 100 36.0
Os04g0457800 Oryza sativa ssp. japonica HOM05D000168 ORTHO05D001351 6.6e-06 55.1 77 39.0
PGR102G1317 Punica granatum HOM05D000029 ORTHO05D001395 6.6e-06 55.1 96 35.4
SMO172G0128 Selaginella moellendorffii HOM05D000168 ORTHO05D001351 6.6e-06 55.1 75 42.7
SMO356G0662 Selaginella moellendorffii HOM05D000029 ORTHO05D002586 6.6e-06 55.1 87 40.2
Aqoxy6G00496 Aquilegia oxysepala HOM05D000168 ORTHO05D001351 8.6e-06 54.7 78 42.3
arahy.Tifrunner.gnm1.ann1.JE2YM9 Arachis hypogaea HOM05D000168 ORTHO05D001351 8.6e-06 54.7 102 38.2
BcaC05g25654 Brassica carinata HOM05D000029 ORTHO05D002162 8.6e-06 54.7 87 37.9
A04p18370 Brassica napus HOM05D000168 ORTHO05D001351 8.6e-06 54.7 77 41.6
C05p15650 Brassica napus HOM05D000029 ORTHO05D002162 8.6e-06 54.7 87 37.9
BolC5t30272H Brassica oleracea HOM05D000029 ORTHO05D002162 8.6e-06 54.7 87 37.9
CiPaw.06G107300 Carya illinoinensis HOM05D000168 ORTHO05D001118 8.6e-06 54.7 96 34.4
Ca_00119_v3 Cicer arietinum L. HOM05D000168 ORTHO05D001351 8.6e-06 54.7 102 35.3
MELO3C017569.2 Cucumis melo HOM05D000168 ORTHO05D001351 8.6e-06 54.7 98 35.7
Eucgr.H03383 Eucalyptus grandis HOM05D000168 ORTHO05D001118 8.6e-06 54.7 96 36.5
Glyma.18G059600 Glycine max HOM05D000761 ORTHO05D001062 8.6e-06 54.7 87 31.0
Gorai.013G063200 Gossypium raimondii HOM05D000168 ORTHO05D001351 8.6e-06 54.7 78 42.3
Lsat_1_v5_gn_9_117621 Lactuca sativa HOM05D000168 ORTHO05D001351 8.6e-06 54.7 77 41.6
MBI04_g06587_MAGBIO Magnolia biondii HOM05D000633 ORTHO05D008509 8.6e-06 54.7 99 36.4
Medtr1g106785 Medicago truncatula HOM05D000168 ORTHO05D001118 8.6e-06 54.7 97 38.1
Medtr2g008390 Medicago truncatula HOM05D000168 ORTHO05D001351 8.6e-06 54.7 73 41.1
Phvul.008G258700 Phaseolus vulgaris HOM05D000761 ORTHO05D001062 8.6e-06 54.7 104 33.7
SGA_v2.0_scaffold456G51915 Striga asiatica HOM05D000168 ORTHO05D001118 8.6e-06 54.7 71 43.7


User provided reference genes

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