Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.2e-71 270.8 146 100.0
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.6e-34 148.7 145 51.0
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 9.1e-22 107.5 152 40.8
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.8e-20 102.1 126 42.9
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.0e-20 101.7 161 39.1
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-17 94.0 135 45.2
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.3e-15 87.0 157 36.9
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 6.3e-15 84.7 131 35.9
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.3e-15 84.7 140 38.6
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.4e-14 83.6 140 40.7
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 1.4e-14 83.6 133 36.8
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.8e-14 83.2 129 37.2
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 2.4e-14 82.8 127 40.2
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 3.1e-14 82.4 127 38.6
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 3.1e-14 82.4 132 35.6
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.1e-14 82.4 125 35.2
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.1e-14 82.4 160 35.6
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 5.3e-14 81.6 128 34.4
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 9.1e-14 80.9 130 35.4
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 9.1e-14 80.9 125 34.4
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 9.1e-14 80.9 127 34.6
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 1.2e-13 80.5 128 34.4
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 1.2e-13 80.5 131 32.8
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.6e-13 80.1 130 35.4
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 2.0e-13 79.7 136 33.8
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 2.0e-13 79.7 125 38.4
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 2.0e-13 79.7 127 35.4
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 2.6e-13 79.3 132 35.6
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.5e-13 79.0 138 34.1
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 3.5e-13 79.0 141 34.8
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 3.5e-13 79.0 134 36.6
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 5.9e-13 78.2 134 35.1
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 7.7e-13 77.8 129 38.0
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 7.7e-13 77.8 151 37.7
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 7.7e-13 77.8 129 34.9
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.0e-12 77.4 134 36.6
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 1.3e-12 77.0 137 32.1
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 1.3e-12 77.0 134 37.3
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.3e-12 77.0 130 33.8
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 1.7e-12 76.6 139 33.1
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.2e-12 76.3 129 34.9
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 2.9e-12 75.9 134 37.3
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.9e-12 75.9 129 34.1
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 2.9e-12 75.9 130 33.8
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 3.8e-12 75.5 132 33.3
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 5.0e-12 75.1 133 36.1
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 8.5e-12 74.3 135 33.3
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 8.5e-12 74.3 124 39.5
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 1.9e-11 73.2 133 31.6
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.9e-11 73.2 127 37.8
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.9e-11 73.2 132 34.1
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 2.5e-11 72.8 139 33.8
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 2.5e-11 72.8 149 32.9
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.2e-11 72.4 131 32.8
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 3.2e-11 72.4 128 38.3
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.2e-11 72.0 131 32.8
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 4.2e-11 72.0 131 32.8
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 5.5e-11 71.6 141 31.2
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 7.2e-11 71.2 129 34.9
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 7.2e-11 71.2 143 31.5
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 7.2e-11 71.2 139 35.3
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 9.4e-11 70.9 129 34.1
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 9.4e-11 70.9 129 34.1
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 1.2e-10 70.5 125 30.4
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.2e-10 70.5 132 33.3
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.2e-10 70.5 133 34.6
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.2e-10 70.5 136 33.8
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.2e-10 70.5 138 33.3
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 1.6e-10 70.1 134 31.3
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 2.1e-10 69.7 128 31.2
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 2.1e-10 69.7 129 34.1
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 2.7e-10 69.3 128 29.7
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.7e-10 69.3 110 36.4
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 3.6e-10 68.9 136 33.8
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 4.7e-10 68.6 125 28.8
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 4.7e-10 68.6 153 32.7
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 8.0e-10 67.8 130 33.1
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 8.0e-10 67.8 126 32.5
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 8.0e-10 67.8 128 30.5
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.0e-09 67.4 157 30.6
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 1.0e-09 67.4 124 33.9
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.8e-09 66.6 128 29.7
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.8e-09 66.6 128 29.7
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 2.3e-09 66.2 133 33.1
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.3e-09 66.2 155 32.3
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 3.0e-09 65.9 126 33.3
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 3.0e-09 65.9 125 29.6
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 3.0e-09 65.9 125 29.6
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 3.0e-09 65.9 124 32.3
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 4.0e-09 65.5 137 34.3
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 4.0e-09 65.5 121 33.9
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 4.0e-09 65.5 134 28.4
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 5.2e-09 65.1 130 33.8
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.2e-08 63.9 131 32.1
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.5e-08 63.5 136 33.8
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.5e-08 63.5 144 32.6
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 1.5e-08 63.5 140 33.6
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.5e-08 63.5 129 30.2
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 2.0e-08 63.2 128 28.9
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 2.0e-08 63.2 139 29.5
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 3.3e-08 62.4 131 31.3
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 3.3e-08 62.4 129 31.0
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 4.4e-08 62.0 129 27.9
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 4.4e-08 62.0 133 30.1
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 4.4e-08 62.0 132 31.1
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 5.7e-08 61.6 127 31.5
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 5.7e-08 61.6 130 31.5
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 5.7e-08 61.6 143 33.6
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 5.7e-08 61.6 136 35.3
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 9.7e-08 60.8 132 34.1
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 9.7e-08 60.8 143 26.6
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 1.3e-07 60.5 126 31.7
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.3e-07 60.5 131 28.2
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.7e-07 60.1 158 30.4
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 1.7e-07 60.1 140 30.7
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 2.8e-07 59.3 132 32.6
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 3.7e-07 58.9 110 34.5
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 4.8e-07 58.5 111 33.3
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 4.8e-07 58.5 143 27.3
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 4.8e-07 58.5 126 32.5
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 6.3e-07 58.2 111 33.3
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 6.3e-07 58.2 131 32.8
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 6.3e-07 58.2 131 32.8
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 8.2e-07 57.8 143 35.0
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 8.2e-07 57.8 135 33.3
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 1.1e-06 57.4 155 29.7
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 1.1e-06 57.4 147 30.6
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.1e-06 57.4 127 27.6
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.1e-06 57.4 127 27.6
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.4e-06 57.0 142 26.8
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.4e-06 57.0 131 30.5
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.4e-06 57.0 131 30.5
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 1.4e-06 57.0 129 33.3
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.8e-06 56.6 127 29.9
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 3.1e-06 55.8 134 32.1
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 3.1e-06 55.8 128 32.0
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 4.1e-06 55.5 141 33.3
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 4.1e-06 55.5 141 33.3
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.3e-06 55.1 115 31.3
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.0e-06 54.7 142 32.4
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 9.1e-06 54.3 129 31.0
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 9.1e-06 54.3 135 29.6


User provided reference genes

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