Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.1e-221 773.1 405 100.0
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 9.1e-96 354.8 286 65.0
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.4e-83 314.3 299 54.5
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 3.0e-83 313.2 290 54.8
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 6.7e-83 312.0 278 57.2
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 8.8e-83 311.6 278 57.2
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 2.6e-82 310.1 290 53.8
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 3.3e-82 309.7 290 54.5
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 5.7e-82 308.9 281 55.2
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 7.4e-82 308.5 301 54.8
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.2e-81 307.0 301 54.2
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.2e-81 307.0 278 55.0
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 3.7e-81 306.2 317 53.0
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 3.7e-81 306.2 317 51.7
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 6.3e-81 305.4 278 52.9
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 8.2e-81 305.1 297 53.2
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.4e-80 304.3 290 53.4
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 1.8e-80 303.9 264 58.0
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 2.4e-80 303.5 264 58.3
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 5.3e-80 302.4 310 51.9
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 7.0e-80 302.0 316 49.7
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 9.1e-80 301.6 280 53.9
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.6e-79 300.8 266 57.1
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 1.6e-79 300.8 288 54.9
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.6e-79 300.8 308 51.3
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 2.0e-79 300.4 281 55.5
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 2.0e-79 300.4 264 56.8
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 2.0e-79 300.4 279 53.4
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.5e-79 299.7 281 55.5
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 3.5e-79 299.7 290 54.5
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 4.5e-79 299.3 337 49.0
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 5.9e-79 298.9 265 57.0
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 7.7e-79 298.5 268 57.8
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 7.7e-79 298.5 264 55.7
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 7.7e-79 298.5 278 55.8
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 1.3e-78 297.7 264 56.1
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.3e-78 297.7 282 51.4
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.7e-78 297.4 315 50.8
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 3.8e-78 296.2 279 54.1
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 3.8e-78 296.2 284 54.6
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 5.0e-78 295.8 279 54.8
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 5.0e-78 295.8 282 53.9
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 6.5e-78 295.4 280 53.9
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 6.5e-78 295.4 264 54.9
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 8.5e-78 295.0 278 54.0
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 8.5e-78 295.0 278 54.0
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 8.5e-78 295.0 279 53.0
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-77 294.7 279 54.1
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.5e-77 294.3 278 54.0
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.5e-77 294.3 264 54.9
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.5e-77 294.3 278 53.2
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.9e-77 293.9 296 52.7
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 1.9e-77 293.9 280 54.3
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.9e-77 293.9 334 49.1
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.9e-77 293.9 261 55.6
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 2.5e-77 293.5 285 52.3
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 2.5e-77 293.5 282 52.5
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 3.2e-77 293.1 264 56.8
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 3.2e-77 293.1 255 54.9
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 5.5e-77 292.4 278 53.6
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 9.4e-77 291.6 278 54.0
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.2e-76 291.2 283 51.2
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.1e-76 290.4 273 53.5
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 2.7e-76 290.0 278 52.5
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 3.6e-76 289.7 274 53.6
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 8.0e-76 288.5 300 52.3
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.4e-75 287.7 318 48.4
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.3e-75 287.0 272 53.7
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.0e-75 286.6 315 49.8
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 5.2e-75 285.8 278 53.2
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 8.8e-75 285.0 300 51.3
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.8e-73 280.0 273 52.4
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 6.3e-73 278.9 248 56.5
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.1e-72 276.6 270 53.7
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.1e-72 276.2 317 48.6
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 7.0e-72 275.4 249 55.8
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 9.1e-72 275.0 299 50.8
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.0e-71 273.9 359 45.7
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 3.0e-67 260.0 280 51.1
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 6.8e-67 258.8 200 67.5
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.7e-65 254.2 278 48.6
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 3.7e-65 253.1 267 49.4
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 5.4e-64 249.2 296 48.0
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 7.0e-64 248.8 264 51.5
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 6.6e-62 242.3 264 48.5
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.9e-61 240.7 264 50.4
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.2e-60 238.0 311 45.7
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 1.6e-60 237.7 262 51.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.4e-59 234.6 261 49.0
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 4.0e-59 233.0 304 44.4
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 4.0e-59 233.0 268 48.5
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 5.7e-58 229.2 202 58.4
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 2.2e-57 227.3 197 56.9
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 4.9e-57 226.1 265 46.8
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 1.4e-56 224.6 332 42.2
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.1e-56 223.0 186 60.2
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.4e-56 222.6 186 59.7
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 7.0e-56 222.2 199 55.8
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 9.2e-56 221.9 186 60.2
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 9.5e-53 211.8 295 42.4
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 4.9e-49 199.5 260 44.6
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.1e-45 188.3 164 56.7
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 9.5e-45 185.3 207 49.8
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 7.8e-39 165.6 190 47.9
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 8.9e-35 152.1 138 61.6
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 9.2e-32 142.1 194 43.3
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 2.7e-31 140.6 244 36.9
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 5.6e-29 132.9 265 32.1
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 7.3e-29 132.5 143 51.0
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 8.1e-28 129.0 234 33.8
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 8.9e-27 125.6 187 41.2
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 5.8e-26 122.9 133 46.6
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.4e-24 118.2 189 39.7
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.2e-23 115.2 190 39.5
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 5.1e-22 109.8 138 47.8
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 4.3e-21 106.7 216 36.6
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 9.6e-21 105.5 94 54.3
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 2.1e-20 104.4 214 36.0
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 3.6e-20 103.6 226 35.4
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 8.1e-20 102.4 83 65.1
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 2.0e-18 97.8 87 59.8
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.6e-15 88.2 104 48.1
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 1.6e-12 78.2 106 42.5
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 2.4e-11 74.3 62 58.1
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 4.0e-11 73.6 68 47.1
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.0e-10 71.2 77 46.8
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 4.5e-10 70.1 99 42.4
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 7.6e-10 69.3 79 46.8
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 4.9e-09 66.6 62 51.6
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 6.4e-09 66.2 57 50.9
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 1.9e-08 64.7 57 50.9
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 1.0e-06 58.9 142 28.2


User provided reference genes

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