Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 8.2e-311 1069.7 601 100.0
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 5.4e-161 572.0 509 59.7
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 2.6e-155 553.1 478 60.7
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 6.3e-154 548.5 499 59.3
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.8e-153 547.0 439 64.7
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 1.8e-153 547.0 515 58.4
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.4e-153 546.6 499 59.3
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 3.1e-153 546.2 459 62.5
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 4.1e-153 545.8 453 63.4
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 7.0e-153 545.0 484 60.1
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 1.2e-152 544.3 448 62.7
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.2e-152 544.3 510 57.8
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 1.2e-152 544.3 501 59.1
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.6e-152 543.9 459 62.5
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 2.7e-152 543.1 509 57.6
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 2.7e-152 543.1 524 57.1
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 2.7e-152 543.1 487 59.3
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 3.5e-152 542.7 458 61.8
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 4.5e-152 542.3 459 62.3
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 5.9e-152 542.0 467 61.0
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 5.9e-152 542.0 475 61.3
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 7.8e-152 541.6 463 61.8
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.0e-151 541.2 496 58.3
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 2.9e-151 539.7 489 58.3
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 2.9e-151 539.7 429 63.4
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.9e-151 539.7 500 59.0
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 3.8e-151 539.3 521 57.8
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 3.8e-151 539.3 482 59.5
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 3.8e-151 539.3 517 58.0
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 5.0e-151 538.9 472 60.4
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 6.6e-151 538.5 517 58.0
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 8.6e-151 538.1 433 63.7
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 1.1e-150 537.7 439 64.5
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 1.9e-150 537.0 517 56.3
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 2.5e-150 536.6 476 60.5
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 2.5e-150 536.6 490 59.4
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 2.5e-150 536.6 493 58.8
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 3.3e-150 536.2 451 61.9
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 9.5e-150 534.6 487 59.5
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 9.5e-150 534.6 466 61.2
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 9.5e-150 534.6 472 61.0
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 9.5e-150 534.6 478 59.0
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 1.2e-149 534.3 459 61.7
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 1.2e-149 534.3 472 59.7
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 1.6e-149 533.9 473 59.8
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 4.7e-149 532.3 466 59.9
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 4.7e-149 532.3 459 61.2
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 6.1e-149 531.9 483 58.6
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 8.0e-149 531.6 466 59.9
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 1.0e-148 531.2 480 59.6
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 1.4e-148 530.8 442 63.1
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 2.3e-148 530.0 501 59.3
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 3.0e-148 529.6 489 57.7
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 5.2e-148 528.9 456 61.2
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 5.2e-148 528.9 445 62.5
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 6.8e-148 528.5 494 57.9
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.2e-147 527.7 481 57.2
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 4.4e-147 525.8 456 61.8
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 4.4e-147 525.8 482 58.9
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 7.5e-147 525.0 513 55.2
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 9.8e-147 524.6 517 55.9
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.3e-146 524.2 429 62.5
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 1.3e-146 524.2 517 55.3
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.7e-146 523.9 455 61.8
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 2.9e-146 523.1 459 60.3
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 2.9e-146 523.1 425 64.5
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 2.9e-146 523.1 434 63.4
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 4.9e-146 522.3 491 56.8
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 4.9e-146 522.3 451 61.6
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 8.3e-146 521.5 482 58.3
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 8.3e-146 521.5 517 54.7
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 1.8e-145 520.4 487 57.5
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 2.4e-145 520.0 516 54.8
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 3.2e-145 519.6 479 59.1
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 4.1e-145 519.2 447 60.9
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 5.4e-145 518.8 447 60.9
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 5.4e-145 518.8 447 60.9
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 9.2e-145 518.1 427 62.3
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 1.2e-144 517.7 447 60.9
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 2.0e-144 516.9 446 60.5
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 4.6e-144 515.8 447 60.4
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 4.6e-144 515.8 426 63.1
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 4.6e-144 515.8 511 54.0
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 5.9e-144 515.4 436 61.0
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 2.3e-143 513.5 498 57.0
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 3.0e-143 513.1 454 60.1
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 3.9e-143 512.7 446 60.5
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 8.6e-143 511.5 434 60.8
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 8.6e-143 511.5 434 60.8
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 1.5e-142 510.8 434 60.8
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 4.3e-142 509.2 434 60.4
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 5.6e-142 508.8 447 60.6
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.2e-141 507.7 485 57.7
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 2.8e-141 506.5 379 67.0
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 6.2e-141 505.4 517 53.4
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.1e-140 504.6 342 71.9
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 3.1e-140 503.1 545 52.3
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 4.0e-140 502.7 432 60.9
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 1.5e-139 500.7 356 69.4
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 1.5e-139 500.7 479 57.2
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 1.7e-135 487.3 430 59.3
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 5.0e-135 485.7 430 59.1
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.1e-134 484.6 483 55.5
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 9.5e-134 481.5 476 54.6
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 2.3e-132 476.9 483 53.6
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 3.1e-132 476.5 438 58.4
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 4.4e-131 472.6 454 58.1
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 1.7e-130 470.7 438 57.3
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 6.4e-130 468.8 441 56.9
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 1.2e-128 464.5 354 65.3
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.7e-128 463.4 407 60.2
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 6.0e-128 462.2 442 57.2
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 1.3e-127 461.1 519 51.4
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.0e-127 459.9 457 56.9
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 8.6e-127 458.4 457 56.7
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 8.6e-127 458.4 407 60.2
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 8.6e-127 458.4 468 55.3
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 5.6e-126 455.7 403 60.3
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 3.2e-121 439.9 439 52.8
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 2.5e-118 430.3 522 48.7
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 4.0e-116 422.9 404 55.4
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.2e-115 421.4 424 54.7
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 1.1e-113 414.8 435 52.4
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.4e-113 414.5 435 52.0
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 5.4e-113 412.5 347 62.2
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.3e-102 376.7 344 56.7
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 3.7e-101 373.2 364 55.8
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 6.2e-101 372.5 365 56.2
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 8.1e-101 372.1 316 61.4
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 1.1e-100 371.7 437 46.5
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.8e-100 370.9 450 47.6
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 3.4e-99 366.7 397 50.4
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 4.9e-98 362.8 424 50.7
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-96 357.8 383 52.2
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 1.1e-92 345.1 500 42.6
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 4.0e-92 343.2 492 42.7
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 4.0e-92 343.2 306 57.5
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 1.5e-91 341.3 517 41.8
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 8.7e-87 325.5 674 35.0
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 1.1e-86 325.1 391 46.3
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 5.0e-82 309.7 393 45.3
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 2.5e-78 297.4 207 68.1
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-77 294.7 300 54.3
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 2.4e-76 290.8 327 47.7
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 1.5e-75 288.1 258 59.7
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 3.2e-73 280.4 250 56.4
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 5.7e-70 269.6 188 68.1
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 3.4e-67 260.4 463 38.9
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 6.1e-64 249.6 542 35.4
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 1.7e-53 214.9 177 57.6
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.7e-53 214.9 194 55.7
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.8e-52 211.5 365 40.0
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 1.9e-33 148.3 156 55.1
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 3.6e-32 144.1 92 68.5
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 2.5e-25 121.3 96 60.4
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 4.3e-25 120.6 306 33.0
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 7.0e-20 103.2 203 36.5
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.2e-19 102.4 106 49.1
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 2.8e-16 91.3 93 53.8
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 6.2e-16 90.1 133 42.1
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 4.0e-15 87.4 45 84.4
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 2.6e-14 84.7 67 62.7
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 3.4e-14 84.3 66 60.6
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.4e-12 78.2 71 54.9
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 7.1e-12 76.6 123 39.8
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 1.7e-10 72.0 46 76.1
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 8.6e-10 69.7 229 27.9
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 9.5e-09 66.2 129 33.3
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 4.0e-07 60.8 72 45.8
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 1.2e-06 59.3 66 43.9
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.2e-06 59.3 201 26.4
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.5e-06 58.9 199 25.6
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 2.6e-06 58.2 31 83.9
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.6e-06 58.2 212 26.9
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 4.4e-06 57.4 51 52.9


User provided reference genes

Program Settings