Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0084s0028 Marchantia polymorpha HOM05D024351 ORTHO05D014010 4.8e-138 495.7 549 100.0
Mapoly0001s0152 Marchantia polymorpha HOM05D024351 ORTHO05D005974 1.6e-24 118.6 173 42.8
Mapoly0048s0080 Marchantia polymorpha HOM05D022175 ORTHO05D014010 2.1e-16 91.7 113 38.9
Mapoly0096s0031 Marchantia polymorpha HOM05D001705 ORTHO05D002725 2.7e-16 91.3 137 38.0
Mapoly0032s0028 Marchantia polymorpha HOM05D001705 ORTHO05D002725 4.3e-14 84.0 106 43.4
Mapoly0090s0078 Marchantia polymorpha HOM05D022608 ORTHO05D002217 1.3e-13 82.4 120 40.0
Mapoly0203s0012 Marchantia polymorpha HOM05D022175 ORTHO05D014010 1.7e-13 82.0 129 39.5
Mapoly0052s0127 Marchantia polymorpha HOM05D000071 ORTHO05D014010 2.8e-13 81.3 129 37.2
Pp3c25_12800 Physcomitrium patens HOM05D001705 ORTHO05D002725 2.0e-11 75.1 149 33.6
Mapoly0100s0019 Marchantia polymorpha HOM05D024351 ORTHO05D014010 3.4e-11 74.3 104 38.5
Mapoly0054s0114 Marchantia polymorpha HOM05D001705 ORTHO05D014010 7.7e-11 73.2 118 40.7
Mapoly0004s0012 Marchantia polymorpha HOM05D024351 ORTHO05D013588 1.9e-09 68.6 139 33.1
RcHm_v2.0_Chr3g0478311 Rosa chinensis HOM05D000053 ORTHO05D000448 3.2e-09 67.8 124 33.1
Mapoly0095s0020 Marchantia polymorpha HOM05D010742 ORTHO05D000448 4.2e-09 67.4 153 37.9
Pp3c4_1760 Physcomitrium patens HOM05D022175 ORTHO05D014010 5.5e-09 67.0 137 29.9
Thecc.07G019100 Theobroma cacao HOM05D000053 ORTHO05D000035 9.4e-09 66.2 137 32.8
Os02g0157100 Oryza sativa ssp. japonica HOM05D001506 ORTHO05D000455 1.6e-08 65.5 129 28.7
MELO3C005452.2 Cucumis melo HOM05D000071 ORTHO05D000029 2.1e-08 65.1 139 33.8
Pp3c3_29330 Physcomitrium patens HOM05D000071 ORTHO05D000029 3.6e-08 64.3 103 34.0
QL04p065586 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-08 64.3 122 35.2
QL08p005375 Quercus lobata HOM05D000053 ORTHO05D000035 3.6e-08 64.3 122 35.2
CsaV3_5G005040 Cucumis sativus L. HOM05D000071 ORTHO05D000029 7.9e-08 63.2 139 33.1
MELO3C002747.2 Cucumis melo HOM05D000071 ORTHO05D000029 1.0e-07 62.8 107 37.4
Os02g0153700 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 1.0e-07 62.8 82 37.8
Medtr7g023730 Medicago truncatula HOM05D001169 ORTHO05D001002 1.8e-07 62.0 104 34.6
RcHm_v2.0_Chr3g0478091 Rosa chinensis HOM05D000053 ORTHO05D000448 1.8e-07 62.0 116 32.8
Hund24763 Selenicereus undatus HOM05D001169 ORTHO05D001002 1.8e-07 62.0 133 33.8
CANSAT80G1027 Cannabis sativa HOM05D000071 ORTHO05D000029 2.3e-07 61.6 123 35.0
Mapoly0020s0097 Marchantia polymorpha HOM05D002120 ORTHO05D002217 2.3e-07 61.6 120 35.8
AagrBONN_evm.TU.Sc2ySwM_344.1981 Anthoceros agrestis HOM05D010742 ORTHO05D000029 3.0e-07 61.2 148 31.1
arahy.Tifrunner.gnm1.ann1.S3Z82H Arachis hypogaea HOM05D000053 ORTHO05D000035 3.0e-07 61.2 139 33.1
Mapoly0806s0001 Marchantia polymorpha HOM05D024351 ORTHO05D013588 3.0e-07 61.2 212 41.0
RcHm_v2.0_Chr1g0316251 Rosa chinensis HOM05D000053 ORTHO05D000448 3.0e-07 61.2 115 31.3
TAR362G0902 Trochodendron aralioides HOM05D001705 ORTHO05D002725 3.0e-07 61.2 121 33.9
FvH4_6g21370 Fragaria vesca HOM05D000053 ORTHO05D000448 3.9e-07 60.8 115 31.3
FAN05G0080 Fragaria x ananassa HOM05D000053 ORTHO05D000448 3.9e-07 60.8 115 31.3
Mapoly0089s0004 Marchantia polymorpha HOM05D000029 ORTHO05D002586 5.1e-07 60.5 122 34.4
Prupe.2G270200 Prunus persica HOM05D000071 ORTHO05D000029 5.1e-07 60.5 113 36.3
RcHm_v2.0_Chr3g0478141 Rosa chinensis HOM05D000053 ORTHO05D000448 5.1e-07 60.5 103 37.9
Duzib177G0070 Durio zibethinus HOM05D001705 ORTHO05D002725 6.7e-07 60.1 93 37.6
Gohir.D09G162401 Gossypium hirsutum HOM05D000053 ORTHO05D000448 6.7e-07 60.1 117 32.5
Os02g0153500 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 6.7e-07 60.1 129 31.0
Pp3c21_19160 Physcomitrium patens HOM05D001705 ORTHO05D002725 6.7e-07 60.1 156 27.6
CANSAT78G1516 Cannabis sativa HOM05D001705 ORTHO05D002725 8.8e-07 59.7 59 44.1
Gorai.004G267900 Gossypium raimondii HOM05D001705 ORTHO05D002725 8.8e-07 59.7 136 30.1
Gorai.006G184100 Gossypium raimondii HOM05D000053 ORTHO05D000448 8.8e-07 59.7 117 32.5
Thecc.03G189200 Theobroma cacao HOM05D001705 ORTHO05D002725 8.8e-07 59.7 61 42.6
Ciclev10018299m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.1e-06 59.3 156 29.5
Duzib093G1648 Durio zibethinus HOM05D000053 ORTHO05D000035 1.1e-06 59.3 132 31.8
Duzib106G0191 Durio zibethinus HOM05D000053 ORTHO05D000448 1.1e-06 59.3 57 49.1
Thhalv10007504m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 1.1e-06 59.3 123 31.7
RcHm_v2.0_Chr3g0478381 Rosa chinensis HOM05D000053 ORTHO05D000448 1.1e-06 59.3 127 30.7
Thecc.07G018900 Theobroma cacao HOM05D000053 ORTHO05D000035 1.1e-06 59.3 137 29.2
Gohir.D04G149600 Gossypium hirsutum HOM05D003705 ORTHO05D007730 1.5e-06 58.9 111 36.9
Gorai.012G136100 Gossypium raimondii HOM05D003705 ORTHO05D007730 1.5e-06 58.9 111 36.9
Manes.10G020900 Manihot esculenta HOM05D000053 ORTHO05D000035 1.5e-06 58.9 123 34.1
RcHm_v2.0_Chr3g0478491 Rosa chinensis HOM05D000053 ORTHO05D000448 1.5e-06 58.9 115 31.3
Atru.chr1.269 Acer truncatum HOM05D001705 ORTHO05D002725 2.0e-06 58.5 109 35.8
COL.COLO4_30249 Corchorus olitorius HOM05D001705 ORTHO05D002725 2.0e-06 58.5 85 38.8
Dinv28437 Davidia involucrata HOM05D000071 ORTHO05D000029 2.0e-06 58.5 123 34.1
Gohir.A08G230800 Gossypium hirsutum HOM05D001705 ORTHO05D002725 2.0e-06 58.5 131 29.8
CSS0035958 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 2.6e-06 58.2 153 28.8
Gohir.D08G251200 Gossypium hirsutum HOM05D001705 ORTHO05D002725 2.6e-06 58.2 131 29.8
Gorai.007G295800 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.6e-06 58.2 136 33.1
CARHR219720 Cardamine hirsuta HOM05D000053 ORTHO05D000035 3.3e-06 57.8 146 32.9
AUR62007963 Chenopodium quinoa HOM05D000053 ORTHO05D000448 3.3e-06 57.8 110 33.6
Duzib213G1093 Durio zibethinus HOM05D000053 ORTHO05D000035 3.3e-06 57.8 120 33.3
Lj5g0026935 Lotus japonicus HOM05D000071 ORTHO05D000029 3.3e-06 57.8 51 45.1
CSS0007253 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 4.4e-06 57.4 153 28.8
ClCG11G008390 Citrullus lanatus HOM05D001705 ORTHO05D002725 4.4e-06 57.4 126 28.6
Duzib093G1302 Durio zibethinus HOM05D000053 ORTHO05D000448 4.4e-06 57.4 125 30.4
Thhalv10010003m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 4.4e-06 57.4 125 32.0
FAN11G2964 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.4e-06 57.4 147 29.3
Lj7A419T37 Lonicera japonica HOM05D001705 ORTHO05D002725 4.4e-06 57.4 106 34.9
Medtr8g041100 Medicago truncatula HOM05D000071 ORTHO05D000029 4.4e-06 57.4 51 45.1
Os06g0692300 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 4.4e-06 57.4 120 33.3
PSO384G1457 Papaver somniferum HOM05D001705 ORTHO05D002725 4.4e-06 57.4 117 36.8
Peaxi162Scf00078g00710 Petunia axillaris HOM05D001705 ORTHO05D002725 4.4e-06 57.4 146 32.2
QL08p006319 Quercus lobata HOM05D000053 ORTHO05D000035 4.4e-06 57.4 140 29.3
TPR.G31824 Trifolium pratense HOM05D000053 ORTHO05D000035 4.4e-06 57.4 142 28.9
arahy.Tifrunner.gnm1.ann1.N6XEKT Arachis hypogaea HOM05D000071 ORTHO05D000029 5.7e-06 57.0 109 34.9
MELO3C023993.2 Cucumis melo HOM05D000071 ORTHO05D000029 5.7e-06 57.0 139 34.5
Medtr5g080000 Medicago truncatula HOM05D000053 ORTHO05D000035 5.7e-06 57.0 133 29.3
Prupe.1G100100 Prunus persica HOM05D000071 ORTHO05D000029 5.7e-06 57.0 69 39.1
Prupe.4G116800 Prunus persica HOM05D000071 ORTHO05D000029 5.7e-06 57.0 69 39.1
TWI53G0779 Tripterygium wilfordii HOM05D003705 ORTHO05D007730 5.7e-06 57.0 120 32.5
CANSAT11G2220 Cannabis sativa HOM05D000053 ORTHO05D000035 7.4e-06 56.6 104 37.5
Carub.0003s2752 Capsella rubella HOM05D001705 ORTHO05D002725 7.4e-06 56.6 145 30.3
MD05G1095600 Malus domestica HOM05D000053 ORTHO05D000448 7.4e-06 56.6 135 29.6
Medtr8g046170 Medicago truncatula HOM05D000071 ORTHO05D000029 7.4e-06 56.6 56 41.1
RcHm_v2.0_Chr3g0462001 Rosa chinensis HOM05D000053 ORTHO05D000448 7.4e-06 56.6 138 29.7
RcHm_v2.0_Chr3g0477991 Rosa chinensis HOM05D000053 ORTHO05D000448 7.4e-06 56.6 115 31.3
RcHm_v2.0_Chr7g0207801 Rosa chinensis HOM05D000071 ORTHO05D000029 7.4e-06 56.6 135 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1978 Anthoceros agrestis HOM05D010742 ORTHO05D038371 9.7e-06 56.2 74 39.2
arahy.Tifrunner.gnm1.ann1.06NKS3 Arachis hypogaea HOM05D000053 ORTHO05D000035 9.7e-06 56.2 128 30.5
Cc11_g07480 Coffea canephora HOM05D000071 ORTHO05D000029 9.7e-06 56.2 134 34.3
Gohir.A04G109488 Gossypium hirsutum HOM05D003705 ORTHO05D007730 9.7e-06 56.2 111 36.0
Gorai.009G367500 Gossypium raimondii HOM05D000053 ORTHO05D000035 9.7e-06 56.2 120 34.2
Mapoly0008s0264 Marchantia polymorpha HOM05D001705 ORTHO05D002725 9.7e-06 56.2 136 30.1
Thecc.03G148100 Theobroma cacao HOM05D000071 ORTHO05D000029 9.7e-06 56.2 136 35.3
TPR.G40278 Trifolium pratense HOM05D000071 ORTHO05D000029 9.7e-06 56.2 57 49.1


User provided reference genes

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