Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 5.0e-128 461.1 227 100.0
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.5e-63 246.9 222 56.3
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 4.3e-63 245.4 226 57.5
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 5.3e-61 238.4 206 56.3
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.7e-59 233.4 210 55.7
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 3.8e-59 232.3 230 53.0
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 5.0e-59 231.9 209 55.5
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 8.5e-59 231.1 210 56.2
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 1.1e-58 230.7 186 60.8
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.4e-58 230.3 215 53.5
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 2.5e-58 229.6 219 53.0
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 4.2e-58 228.8 235 51.1
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 4.2e-58 228.8 218 55.0
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 9.4e-58 227.6 210 55.2
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.2e-57 227.3 208 55.8
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.2e-57 227.3 175 61.7
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.6e-57 226.9 208 55.3
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.1e-57 226.5 209 56.5
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.1e-57 226.5 208 56.2
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.1e-57 226.5 208 55.3
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.1e-57 226.5 223 50.7
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 2.7e-57 226.1 245 50.6
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 2.7e-57 226.1 210 54.8
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 2.7e-57 226.1 207 55.1
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.6e-57 225.7 209 53.6
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.6e-57 225.7 209 56.5
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 3.6e-57 225.7 210 53.8
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 4.6e-57 225.3 209 56.0
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 4.6e-57 225.3 211 54.5
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.0e-56 224.2 219 52.5
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.4e-56 223.8 210 53.3
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.4e-56 223.8 217 53.5
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-56 223.4 198 58.6
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-56 223.4 198 58.6
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.8e-56 223.4 207 56.5
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.8e-56 223.4 210 55.7
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.3e-56 223.0 214 54.2
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-56 223.0 207 55.6
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 2.3e-56 223.0 182 59.9
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.0e-56 222.6 217 54.4
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 3.0e-56 222.6 214 52.8
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 3.0e-56 222.6 214 53.7
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 3.0e-56 222.6 210 53.3
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 3.9e-56 222.2 218 53.2
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 5.1e-56 221.9 214 53.3
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 5.1e-56 221.9 220 52.7
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 5.1e-56 221.9 207 55.1
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 6.7e-56 221.5 219 53.4
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 6.7e-56 221.5 187 58.3
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 8.8e-56 221.1 230 50.0
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 8.8e-56 221.1 218 54.6
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.1e-55 220.7 218 52.8
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 1.1e-55 220.7 210 55.2
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.1e-55 220.7 208 55.3
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.1e-55 220.7 214 52.3
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 2.0e-55 219.9 220 51.4
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 2.0e-55 219.9 210 53.3
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.5e-55 219.5 180 59.4
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 3.3e-55 219.2 184 57.6
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.3e-55 219.2 188 58.0
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 4.3e-55 218.8 209 54.1
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 4.3e-55 218.8 217 51.6
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.3e-55 218.8 229 52.0
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 4.3e-55 218.8 223 53.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 5.7e-55 218.4 214 53.3
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 5.7e-55 218.4 219 51.1
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 5.7e-55 218.4 210 53.3
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 7.4e-55 218.0 218 54.6
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 7.4e-55 218.0 217 51.6
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.4e-55 218.0 208 53.8
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 7.4e-55 218.0 209 51.2
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 9.7e-55 217.6 207 52.7
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 9.7e-55 217.6 209 53.1
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 1.3e-54 217.2 210 53.3
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.3e-54 217.2 209 54.1
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.3e-54 217.2 209 55.0
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.3e-54 217.2 219 51.6
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.3e-54 217.2 219 51.6
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.3e-54 217.2 218 50.5
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.3e-54 217.2 211 53.1
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.7e-54 216.9 214 52.3
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.7e-54 216.9 214 52.3
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.7e-54 216.9 187 56.7
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.7e-54 216.9 219 48.9
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.7e-54 216.9 210 52.4
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.7e-54 216.9 211 53.1
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.7e-54 216.9 184 58.7
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 2.2e-54 216.5 213 51.6
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 2.2e-54 216.5 207 53.6
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 2.2e-54 216.5 209 53.1
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 2.2e-54 216.5 210 53.3
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.7e-54 215.7 185 58.4
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 3.7e-54 215.7 184 56.5
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 3.7e-54 215.7 210 52.9
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 4.8e-54 215.3 214 51.9
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 4.8e-54 215.3 222 51.8
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.8e-54 215.3 187 56.7
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-53 214.2 219 51.6
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.1e-53 214.2 210 52.4
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.4e-53 213.8 187 55.6
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.4e-53 213.8 220 51.8
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 3.1e-53 212.6 219 50.2
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 3.1e-53 212.6 183 57.4
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 3.1e-53 212.6 183 57.4
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 4.1e-53 212.2 184 56.0
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 4.1e-53 212.2 232 48.3
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 5.3e-53 211.8 216 51.4
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 6.9e-53 211.5 202 53.0
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 6.9e-53 211.5 220 52.3
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.2e-52 210.7 218 50.0
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.5e-52 210.3 211 53.1
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 7.7e-52 208.0 238 49.2
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.3e-51 207.2 214 52.3
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 1.7e-51 206.8 174 57.5
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.0e-51 205.3 204 50.0
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.9e-50 203.4 175 59.4
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.7e-49 199.5 191 54.5
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 6.1e-49 198.4 210 51.4
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 6.1e-49 198.4 271 42.4
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 1.0e-48 197.6 210 51.4
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 1.4e-48 197.2 170 55.9
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 3.9e-48 195.7 212 49.5
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 3.7e-46 189.1 167 54.5
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 6.3e-46 188.3 167 56.9
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 6.3e-46 188.3 302 37.7
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.2e-46 188.0 159 59.1
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 5.3e-45 185.3 126 66.7
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.0e-43 181.0 207 49.8
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.3e-43 180.6 215 47.0
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 8.5e-43 177.9 209 47.4
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 7.2e-42 174.9 210 48.1
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.7e-41 172.2 116 69.0
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 3.0e-40 169.5 216 47.2
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 4.0e-40 169.1 123 62.6
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 4.4e-39 165.6 199 47.7
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 7.5e-39 164.9 215 43.7
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.3e-38 164.1 129 58.9
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-37 161.0 144 56.2
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 7.7e-36 154.8 170 48.2
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 6.5e-35 151.8 227 41.0
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 8.5e-35 151.4 153 54.2
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.1e-34 151.0 149 52.3
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 4.7e-33 145.6 189 42.9
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 5.2e-32 142.1 127 55.9
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 5.7e-31 138.7 104 58.7
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.6e-25 119.4 156 41.0
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.5e-23 114.0 109 53.2
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 6.3e-22 108.6 163 40.5
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 7.7e-20 101.7 81 58.0
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.3e-19 100.9 174 37.4
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 2.3e-16 90.1 287 26.5
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 3.0e-16 89.7 82 53.7
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 4.0e-16 89.4 74 56.8
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 5.2e-16 89.0 122 41.0
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 6.8e-16 88.6 196 35.2
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.7e-15 85.5 107 48.6
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.7e-14 84.0 67 59.7
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 2.9e-14 83.2 59 67.8
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 4.9e-14 82.4 81 51.9
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 5.9e-12 75.5 95 49.5
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.5e-10 70.1 67 47.8
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 4.7e-09 65.9 163 29.4
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 5.2e-08 62.4 98 40.8
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 4.4e-07 59.3 82 43.9
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 8.3e-06 55.1 136 27.2
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 8.3e-06 55.1 82 40.2


User provided reference genes

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