Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.8e-181 639.0 400 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 5.8e-134 481.9 391 78.8
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 4.6e-131 472.2 391 77.0
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 4.3e-129 465.7 403 68.0
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 7.3e-129 464.9 392 67.9
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 8.9e-127 458.0 396 77.3
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 4.9e-125 452.2 391 68.0
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 5.4e-124 448.7 400 69.8
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.1e-121 441.0 391 67.5
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.5e-121 440.7 394 70.6
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 2.5e-121 439.9 391 71.4
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 4.3e-121 439.1 391 71.1
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.2e-120 437.6 400 63.8
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 3.1e-119 433.0 392 70.7
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 3.1e-119 433.0 392 70.7
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 3.1e-119 433.0 392 70.7
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 6.8e-119 431.8 391 70.1
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.2e-118 431.0 391 64.7
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 1.5e-118 430.6 391 64.5
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 3.4e-118 429.5 390 67.4
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.6e-118 428.3 412 63.1
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 2.9e-117 426.4 391 64.2
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.8e-117 426.0 412 62.9
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 6.4e-117 425.2 391 68.3
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.9e-116 423.7 401 66.3
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.1e-116 422.5 401 66.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.1e-116 422.5 401 66.1
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 7.1e-116 421.8 390 63.1
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 7.1e-116 421.8 401 62.8
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 9.2e-116 421.4 390 67.4
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.2e-115 421.0 391 69.6
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.6e-115 420.6 413 63.2
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.3e-114 417.5 390 61.8
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 3.0e-114 416.4 389 68.6
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 1.2e-112 411.0 405 63.0
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 4.7e-112 409.1 391 67.5
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 4.0e-111 406.0 389 67.1
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 4.0e-111 406.0 400 66.2
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 4.0e-111 406.0 400 66.8
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 4.0e-111 406.0 400 66.8
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 6.9e-111 405.2 393 68.2
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.3e-109 401.0 400 65.8
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 4.9e-109 399.1 391 67.3
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 6.4e-109 398.7 391 67.5
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 6.4e-109 398.7 401 66.3
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 8.4e-109 398.3 391 68.8
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 8.4e-109 398.3 391 67.3
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.1e-108 397.9 392 67.6
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.1e-108 397.9 391 67.0
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.4e-108 397.5 391 65.7
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 3.2e-108 396.4 391 68.0
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 4.2e-108 396.0 391 67.3
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 9.3e-108 394.8 397 67.5
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 9.3e-108 394.8 390 67.9
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 3.5e-107 392.9 392 66.8
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 3.5e-107 392.9 391 67.0
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 4.6e-107 392.5 400 65.5
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.0e-106 391.3 391 66.2
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.0e-106 391.3 391 66.2
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 1.3e-106 391.0 391 68.0
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.3e-106 391.0 392 66.1
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 1.3e-106 391.0 389 67.1
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 2.3e-106 390.2 393 66.2
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 2.3e-106 390.2 390 67.4
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 3.0e-106 389.8 402 53.0
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 3.0e-106 389.8 392 66.8
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 3.9e-106 389.4 391 67.3
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 5.1e-106 389.0 390 66.9
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 5.1e-106 389.0 400 66.0
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.6e-106 388.7 390 66.9
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 6.6e-106 388.7 391 65.5
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 8.7e-106 388.3 391 65.0
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.1e-105 387.9 347 76.1
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.5e-105 387.5 405 56.8
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 1.5e-105 387.5 390 66.7
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.9e-105 387.1 392 67.1
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 1.9e-105 387.1 391 65.0
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 9.6e-105 384.8 390 65.9
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.8e-104 383.3 415 59.3
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 3.6e-104 382.9 391 67.8
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 3.6e-104 382.9 391 66.8
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 4.8e-104 382.5 392 66.1
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 6.2e-104 382.1 391 64.5
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 8.1e-104 381.7 390 65.9
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 1.8e-103 380.6 391 66.0
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 6.9e-103 378.6 392 66.3
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-102 377.5 400 62.5
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.5e-102 377.5 392 63.5
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.5e-102 377.5 433 56.8
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 2.0e-102 377.1 400 63.0
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 9.9e-102 374.8 391 63.2
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-101 374.0 391 63.2
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 1.7e-101 374.0 391 63.2
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 1.7e-101 374.0 391 63.2
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.7e-101 374.0 385 63.9
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 8.4e-101 371.7 388 57.7
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 4.2e-100 369.4 389 63.2
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 4.2e-100 369.4 391 62.9
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 4.2e-100 369.4 391 62.9
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 7.1e-100 368.6 415 61.4
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 9.3e-100 368.2 400 61.8
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.6e-99 367.5 386 63.2
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 5.1e-98 362.5 403 56.6
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 5.1e-98 362.5 403 56.6
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 8.7e-98 361.7 389 64.3
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.3e-97 359.4 391 62.1
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 9.6e-97 358.2 400 60.5
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 1.3e-96 357.8 403 56.3
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 6.9e-95 352.1 402 53.7
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 9.9e-94 348.2 404 61.6
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 3.8e-93 346.3 377 57.0
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 8.4e-93 345.1 389 54.5
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.2e-91 341.3 410 55.4
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.0e-90 338.2 389 57.8
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-90 337.8 393 53.7
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 1.8e-90 337.4 514 49.8
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 3.0e-90 336.7 391 61.1
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.5e-89 334.3 391 51.7
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 3.3e-89 333.2 411 51.6
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 5.6e-89 332.4 391 60.4
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 7.4e-89 332.0 391 60.4
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 7.4e-89 332.0 354 64.7
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-87 328.2 423 50.1
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 4.0e-87 326.2 403 51.1
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 5.8e-86 322.4 391 59.6
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 7.6e-86 322.0 447 42.5
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 6.7e-82 308.9 335 59.4
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.1e-81 308.1 310 69.0
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-80 303.9 406 47.8
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.7e-77 294.3 411 49.4
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 2.5e-76 290.4 391 57.0
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 4.6e-75 286.2 404 45.0
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 7.9e-75 285.4 366 52.7
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 5.1e-74 282.7 384 45.6
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 2.2e-72 277.3 394 52.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 3.1e-71 273.5 385 42.9
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 5.7e-65 252.7 209 56.9
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 5.9e-62 242.7 246 65.9
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.1e-52 211.8 189 56.6
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 5.5e-52 209.5 293 59.4
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 3.6e-51 206.8 249 56.2
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.5e-49 201.4 119 78.2
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.7e-48 198.0 119 76.5
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.1e-44 185.3 150 62.0
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 1.9e-44 184.5 252 49.6
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.9e-44 184.5 319 48.9
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 2.1e-43 181.0 252 49.2
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 6.1e-43 179.5 306 38.6
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 4.0e-42 176.8 120 70.0
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 4.1e-39 166.8 299 38.1
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.3e-37 161.8 123 63.4
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 2.1e-35 154.5 189 45.0
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 3.1e-31 140.6 83 77.1
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 1.6e-30 138.3 107 65.4
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 1.7e-29 134.8 95 71.6
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.7e-21 108.2 138 46.4
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 1.4e-18 98.6 75 61.3
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 1.5e-17 95.1 80 56.2
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.5e-17 95.1 119 42.0
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.9e-16 90.9 49 77.6
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.9e-16 90.1 66 62.1
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 1.9e-15 88.2 78 53.8
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 7.8e-14 82.8 66 56.1
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 5.1e-13 80.1 180 32.2
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 5.6e-12 76.6 67 52.2
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 5.6e-12 76.6 52 65.4
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 9.5e-12 75.9 68 50.0
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.6e-11 75.1 39 82.1
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 4.7e-11 73.6 113 39.8
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 8.1e-11 72.8 111 60.4
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.1e-10 72.4 38 81.6
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 5.2e-10 70.1 39 74.4
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.2e-09 68.9 38 76.3
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 2.2e-08 64.7 172 29.1
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.2e-08 64.7 41 68.3
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.2e-08 64.7 41 68.3
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 2.9e-08 64.3 40 67.5
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 1.6e-06 58.5 67 40.3
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 2.1e-06 58.2 34 67.6
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 6.0e-06 56.6 72 34.7


User provided reference genes

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