Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 2.2e-265 918.3 438 100.0
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 2.4e-163 579.3 412 65.8
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 1.8e-150 536.6 396 62.9
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 6.9e-142 508.1 402 60.0
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 9.0e-142 507.7 418 56.5
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 2.2e-140 503.1 380 60.8
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 5.0e-140 501.9 378 61.4
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 6.5e-140 501.5 378 62.7
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 1.1e-139 500.7 417 56.8
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.1e-139 500.7 411 58.9
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 1.4e-139 500.4 379 60.7
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.9e-139 500.0 411 58.6
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 3.2e-139 499.2 414 56.0
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 3.2e-139 499.2 408 58.6
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 5.5e-139 498.4 389 60.7
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 1.2e-138 497.3 402 57.2
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.6e-138 496.9 407 58.2
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 1.6e-138 496.9 389 60.2
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 2.7e-138 496.1 388 60.3
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 3.6e-138 495.7 415 56.9
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 4.6e-138 495.4 382 61.3
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 6.1e-138 495.0 393 59.8
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.0e-137 494.2 403 58.6
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.0e-137 494.2 379 60.4
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.8e-137 493.4 387 58.1
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 5.1e-137 491.9 409 57.7
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 5.1e-137 491.9 409 57.7
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 5.1e-137 491.9 409 57.9
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 5.1e-137 491.9 379 59.6
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 6.7e-137 491.5 403 56.6
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 6.7e-137 491.5 378 59.5
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 8.8e-137 491.1 406 57.1
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 8.8e-137 491.1 420 56.0
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 1.1e-136 490.7 395 58.0
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.1e-136 490.7 396 58.3
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.0e-136 490.0 392 59.4
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 2.0e-136 490.0 409 56.0
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 3.3e-136 489.2 416 56.0
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 4.3e-136 488.8 405 56.3
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 4.3e-136 488.8 399 56.6
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 5.7e-136 488.4 378 60.6
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.7e-135 486.9 381 59.6
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 2.2e-135 486.5 395 56.7
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 4.8e-135 485.3 378 59.8
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 4.8e-135 485.3 418 56.2
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 1.1e-134 484.2 395 56.7
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 3.1e-134 482.6 393 56.2
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 3.1e-134 482.6 399 56.6
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 3.1e-134 482.6 401 55.6
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 4.1e-134 482.3 396 56.6
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 6.9e-134 481.5 400 57.5
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 2.0e-133 479.9 406 56.7
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 2.6e-133 479.6 383 58.0
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 2.6e-133 479.6 405 56.5
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 4.5e-133 478.8 447 52.6
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 4.5e-133 478.8 377 58.6
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.3e-132 477.2 407 56.0
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.7e-132 476.9 405 56.5
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 1.7e-132 476.9 399 56.9
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 2.2e-132 476.5 379 59.1
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 2.2e-132 476.5 379 59.1
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 2.2e-132 476.5 421 54.9
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.2e-132 476.5 387 56.8
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.9e-132 476.1 380 57.6
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 5.0e-132 475.3 429 53.4
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 8.5e-132 474.6 399 55.6
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 1.1e-131 474.2 400 55.5
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.4e-131 473.8 410 54.4
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 1.9e-131 473.4 405 55.6
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 1.9e-131 473.4 380 57.6
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 2.5e-131 473.0 424 54.7
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 3.2e-131 472.6 381 59.1
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 4.2e-131 472.2 399 55.1
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 9.4e-131 471.1 361 62.3
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 7.9e-130 468.0 386 58.0
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.0e-129 467.6 375 58.9
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 2.3e-129 466.5 390 55.9
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 6.7e-129 464.9 397 57.2
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 1.1e-128 464.2 402 56.7
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 2.6e-128 463.0 386 57.3
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 4.8e-127 458.8 358 60.3
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.8e-126 456.8 432 52.3
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.1e-126 455.7 420 53.3
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 3.5e-125 452.6 390 54.6
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 7.7e-125 451.4 376 56.1
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.0e-124 451.1 370 59.2
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 2.5e-123 446.4 398 57.0
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 9.4e-123 444.5 394 54.3
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.9e-121 439.1 414 52.2
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 3.3e-120 436.0 358 57.3
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 1.7e-119 433.7 370 55.1
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 3.7e-119 432.6 406 51.7
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 2.4e-118 429.9 435 48.0
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 2.2e-116 423.3 385 51.4
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.0e-113 412.5 407 49.9
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.7e-108 397.1 400 49.2
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 1.7e-100 370.5 303 57.4
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 5.0e-100 369.0 341 53.4
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 9.5e-99 364.8 392 48.7
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.6e-98 362.8 406 47.8
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 2.4e-94 350.1 287 57.8
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.7e-93 346.7 278 60.4
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 6.6e-92 342.0 278 56.5
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 2.5e-83 313.5 396 42.2
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.1e-73 281.6 390 39.7
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 3.2e-70 270.0 255 51.4
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 9.2e-70 268.5 226 56.2
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.8e-65 254.2 171 66.1
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.8e-65 254.2 171 66.1
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 6.8e-65 252.3 179 62.0
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.9e-62 244.2 237 51.1
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 2.2e-55 220.7 438 36.1
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.0e-52 211.8 146 64.4
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 1.3e-44 184.9 292 38.7
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.4e-41 174.1 130 61.5
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.6e-40 169.1 103 71.8
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.1e-38 165.2 127 62.2
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 1.4e-33 148.3 206 39.8
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.1e-33 146.7 93 69.9
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.5e-32 143.3 115 59.1
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 4.5e-32 143.3 106 60.4
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 1.2e-29 135.2 89 64.0
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 3.0e-28 130.6 103 61.2
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 7.4e-27 125.9 80 65.0
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 2.2e-26 124.4 105 57.1
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 2.2e-15 87.8 205 32.7
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 4.2e-14 83.6 130 36.2
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 3.1e-09 67.4 90 41.1
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.0e-07 62.4 241 24.1
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 8.5e-07 59.3 251 24.7
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 8.5e-07 59.3 251 24.7
AUR62018095 Chenopodium quinoa HOM05D002999 ORTHO05D003137 8.5e-07 59.3 356 22.5
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 1.5e-06 58.5 249 25.7
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 2.5e-06 57.8 251 25.5
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 2.5e-06 57.8 159 28.9
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 3.2e-06 57.4 251 24.7
TPR.G6705 Trifolium pratense HOM05D000684 ORTHO05D000688 3.2e-06 57.4 299 23.4
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 4.2e-06 57.0 251 25.5
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 4.2e-06 57.0 251 25.5
Medtr5g009530 Medicago truncatula HOM05D000684 ORTHO05D000688 5.5e-06 56.6 299 22.7
Sp7g32260 Schrenkiella parvula HOM05D003825 ORTHO05D004491 7.2e-06 56.2 251 25.5
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 7.2e-06 56.2 241 23.2
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 9.4e-06 55.8 251 25.1
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 9.4e-06 55.8 171 30.4


User provided reference genes

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