Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0081s0073 Marchantia polymorpha HOM05D003400 ORTHO05D003687 0.0e+00 2547.3 1310 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4066 Anthoceros agrestis HOM05D003400 ORTHO05D003687 5.8e-19 101.3 397 27.5
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.6e-16 93.2 430 26.0
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 1.6e-16 93.2 381 28.6
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 2.7e-16 92.4 421 25.9
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 1.3e-15 90.1 497 23.9
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 1.8e-15 89.7 380 25.0
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 6.7e-15 87.8 419 27.2
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 8.7e-15 87.4 420 26.7
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.5e-14 86.7 368 27.4
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 1.9e-14 86.3 372 26.9
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 1.9e-14 86.3 376 25.5
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 1.9e-14 86.3 419 27.2
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 2.5e-14 85.9 365 26.0
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 4.3e-14 85.1 384 26.3
Pp3c27_4350 Physcomitrium patens HOM05D027247 ORTHO05D003687 9.6e-14 84.0 383 26.4
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 9.6e-14 84.0 419 25.8
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 2.1e-13 82.8 363 27.0
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 3.7e-13 82.0 381 24.7
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 6.3e-13 81.3 352 27.3
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 1.4e-12 80.1 374 25.4
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 1.4e-12 80.1 373 26.5
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 1.8e-12 79.7 372 24.2
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 1.8e-12 79.7 379 24.5
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.8e-12 79.7 430 26.0
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 2.4e-12 79.3 383 25.8
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 2.4e-12 79.3 447 25.5
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 3.1e-12 79.0 383 25.8
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 4.1e-12 78.6 363 26.2
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 5.3e-12 78.2 375 25.3
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 5.3e-12 78.2 384 26.3
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 6.9e-12 77.8 367 28.1
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 9.0e-12 77.4 372 24.7
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 1.2e-11 77.0 421 25.7
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.2e-11 77.0 378 26.2
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 1.2e-11 77.0 398 26.6
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 1.5e-11 76.6 378 25.9
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 1.5e-11 76.6 378 26.5
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 1.5e-11 76.6 376 26.3
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 2.6e-11 75.9 378 26.7
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 2.6e-11 75.9 378 24.6
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 2.6e-11 75.9 372 28.0
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 3.4e-11 75.5 377 25.5
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 4.5e-11 75.1 365 23.6
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 4.5e-11 75.1 380 25.8
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 5.9e-11 74.7 426 24.9
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 5.9e-11 74.7 376 27.4
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 7.6e-11 74.3 368 25.3
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 7.6e-11 74.3 381 26.0
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 7.6e-11 74.3 379 25.3
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 7.6e-11 74.3 414 24.9
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 1.0e-10 73.9 372 26.9
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.3e-10 73.6 378 26.7
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 1.7e-10 73.2 369 26.6
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 1.7e-10 73.2 378 25.4
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 2.2e-10 72.8 377 25.2
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 2.9e-10 72.4 374 24.3
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 3.8e-10 72.0 370 24.9
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 3.8e-10 72.0 381 26.0
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 3.8e-10 72.0 372 23.7
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 5.0e-10 71.6 380 25.0
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 5.0e-10 71.6 372 26.6
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 6.5e-10 71.2 390 25.9
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 8.4e-10 70.9 380 26.3
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 8.4e-10 70.9 433 25.2
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.1e-09 70.5 371 25.1
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 1.1e-09 70.5 374 24.3
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.1e-09 70.5 390 26.4
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 1.4e-09 70.1 391 24.8
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 1.4e-09 70.1 372 26.6
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 1.4e-09 70.1 368 23.6
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.4e-09 70.1 379 25.9
CiPaw.13G063500 Carya illinoinensis HOM05D003400 ORTHO05D003687 2.5e-09 69.3 383 25.1
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 2.5e-09 69.3 372 25.5
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 3.2e-09 68.9 372 26.1
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 3.2e-09 68.9 370 23.5
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 4.2e-09 68.6 374 26.2
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 4.2e-09 68.6 367 26.2
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 7.2e-09 67.8 376 25.0
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 9.3e-09 67.4 372 25.5
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 9.3e-09 67.4 380 26.3
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 1.2e-08 67.0 430 22.6
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.2e-08 67.0 363 25.3
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.6e-08 66.6 363 25.1
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 1.6e-08 66.6 400 23.8
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 1.6e-08 66.6 380 25.0
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 2.1e-08 66.2 385 25.7
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 3.5e-08 65.5 384 26.3
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 4.6e-08 65.1 364 26.1
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 4.6e-08 65.1 370 26.2
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 4.6e-08 65.1 375 24.5
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 6.1e-08 64.7 372 26.9
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 6.1e-08 64.7 384 23.2
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 7.9e-08 64.3 368 26.4
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 7.9e-08 64.3 398 23.9
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 7.9e-08 64.3 401 24.9
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 7.9e-08 64.3 391 24.6
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.0e-07 63.9 385 23.6
SMO364G0282 Selaginella moellendorffii HOM05D003400 ORTHO05D003687 1.0e-07 63.9 144 32.6
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 1.3e-07 63.5 376 24.2
ATR1127G045 Amborella trichopoda HOM05D003400 ORTHO05D003687 1.8e-07 63.2 300 28.0
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 1.8e-07 63.2 373 22.8
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 2.3e-07 62.8 419 22.4
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 2.3e-07 62.8 419 23.4
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 2.3e-07 62.8 372 24.2
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 3.9e-07 62.0 393 22.1
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 5.1e-07 61.6 371 24.8
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 6.7e-07 61.2 368 23.6
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 6.7e-07 61.2 429 24.7
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.1e-06 60.5 196 29.1
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.1e-06 60.5 150 34.0
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 1.1e-06 60.5 369 23.3
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.1e-06 60.5 156 30.8
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 1.5e-06 60.1 408 22.8
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 1.9e-06 59.7 423 22.7
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 2.5e-06 59.3 403 24.3
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 2.5e-06 59.3 176 30.1
Ca_12768_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 2.5e-06 59.3 434 23.3
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.5e-06 59.3 371 24.8
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 3.3e-06 58.9 376 21.8
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 4.3e-06 58.5 164 29.3
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 4.3e-06 58.5 420 22.6
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 4.3e-06 58.5 420 22.6
Haze_24472 Corylus avellana HOM05D003400 ORTHO05D003687 4.3e-06 58.5 412 25.2
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 4.3e-06 58.5 376 23.9
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 5.7e-06 58.2 357 23.8
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 5.7e-06 58.2 378 24.9
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 7.4e-06 57.8 180 29.4


User provided reference genes

Program Settings