Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0081s0039 Marchantia polymorpha HOM05D005652 ORTHO05D007300 3.0e-44 181.4 89 100.0
ATR0041G005 Amborella trichopoda HOM05D005652 ORTHO05D007300 4.5e-40 167.5 87 93.1
Pp3c6_16720 Physcomitrium patens HOM05D005652 ORTHO05D007300 4.5e-40 167.5 87 94.3
AagrBONN_evm.TU.Sc2ySwM_362.1619 Anthoceros agrestis HOM05D005652 ORTHO05D007300 2.2e-39 165.2 85 94.1
Nn5g28127 Nelumbo nucifera HOM05D005652 ORTHO05D007300 2.9e-39 164.9 87 92.0
arahy.Tifrunner.gnm1.ann1.AJPJ4J Arachis hypogaea HOM05D005652 ORTHO05D007300 3.8e-39 164.5 86 93.0
GSVIVG01008919001 Vitis vinifera HOM05D005652 ORTHO05D007300 5.0e-39 164.1 85 94.1
PSO170G5049 Papaver somniferum HOM05D005652 ORTHO05D007300 6.5e-39 163.7 87 92.0
CDE06G1598 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
CDE08G1473 Ceratophyllum demersum HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Ciclev10002945m.g Citrus clementina HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Duzib041G0199 Durio zibethinus HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Duzib093G1773 Durio zibethinus HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Glyma.14G163800 Glycine max HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Gohir.A06G041900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Gohir.D06G042900 Gossypium hirsutum HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Gorai.005G091100 Gossypium raimondii HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Gorai.010G048100 Gossypium raimondii HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Lj1g0016776 Lotus japonicus HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
Potri.005G173800 Populus trichocarpa HOM05D005652 ORTHO05D007300 8.5e-39 163.3 83 96.4
Thecc.08G119900 Theobroma cacao HOM05D005652 ORTHO05D007300 8.5e-39 163.3 84 95.2
AT1G77710 Arabidopsis thaliana HOM05D005652 ORTHO05D007300 1.1e-38 162.9 86 91.9
PSO528G0083 Papaver somniferum HOM05D005652 ORTHO05D007300 1.1e-38 162.9 85 94.1
TAR376G0464 Trochodendron aralioides HOM05D005652 ORTHO05D007300 1.1e-38 162.9 85 92.9
FAN20G1151 Fragaria x ananassa HOM05D005652 ORTHO05D007300 1.4e-38 162.5 85 92.9
FAN24G1202 Fragaria x ananassa HOM05D000102 ORTHO05D003793 1.4e-38 162.5 85 92.9
FAN27G1241 Fragaria x ananassa HOM05D005652 ORTHO05D007300 1.4e-38 162.5 85 92.9
Atru.chr13.1343 Acer truncatum HOM05D005652 ORTHO05D007300 1.9e-38 162.2 84 94.0
Aqoxy6G01736 Aquilegia oxysepala HOM05D005652 ORTHO05D007300 1.9e-38 162.2 84 94.0
arahy.Tifrunner.gnm1.ann1.KZ1VTZ Arachis hypogaea HOM05D005652 ORTHO05D007300 1.9e-38 162.2 86 91.9
MSTRG.22423 Avicennia marina HOM05D005652 ORTHO05D007300 1.9e-38 162.2 84 94.0
Ca_19025_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 1.9e-38 162.2 84 94.0
Ca_26775_v3 Cicer arietinum L. HOM05D005652 ORTHO05D007300 1.9e-38 162.2 84 94.0
Nitab4.5_0013867g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 1.9e-38 162.2 84 94.0
PGR042G1865 Punica granatum HOM05D005652 ORTHO05D007300 1.9e-38 162.2 84 94.0
PGSC0003DMG400030853 Solanum tuberosum HOM05D005652 ORTHO05D007300 1.9e-38 162.2 85 92.9
THA.LOC104813142 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 1.9e-38 162.2 84 94.0
THA.LOC104817112 Tarenaya hassleriana HOM05D005652 ORTHO05D007300 1.9e-38 162.2 84 94.0
CSS0012578 Camellia sinensis var. sinensis HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
CANSAT54G2625 Cannabis sativa HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
CiPaw.05G226800 Carya illinoinensis HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
ClCG03G009400 Citrullus lanatus HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Cc06_g19090 Coffea canephora HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
MELO3C003038.2 Cucumis melo HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
CsaV3_5G023210 Cucumis sativus L. HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Dinv27358 Davidia involucrata HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Glyma.04G252400 Glycine max HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Glyma.06G110100 Glycine max HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
HanXRQChr14g0432351 Helianthus annuus HOM05D005652 ORTHO05D007300 2.5e-38 161.8 84 94.0
Hma1.2p1_0009F.1_g006210 Hydrangea macrophylla HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Lalb_Chr08g0241571 Lupinus albus HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Lalb_Chr23g0270881 Lupinus albus HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
MBI09_g06382_MAGBIO Magnolia biondii HOM05D005652 ORTHO05D007300 2.5e-38 161.8 85 92.9
MD08G1169400 Malus domestica HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
MD15G1356000 Malus domestica HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Manes.18G074500 Manihot esculenta HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Medtr5g059210 Medicago truncatula HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Nitab4.5_0000030g0080 Nicotiana tabacum HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Nitab4.5_0000943g0120 Nicotiana tabacum HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Oeu050889.1 Olea europaea HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Peaxi162Scf00408g00839 Petunia axillaris HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Phvul.009G121900 Phaseolus vulgaris HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Psat2g096080 Pisum sativum HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Potri.002G087200 Populus trichocarpa HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
RcHm_v2.0_Chr6g0294951 Rosa chinensis HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Sabra02G0068700 Salix brachista HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Sed0000902 Sechium edule HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Hund16832 Selenicereus undatus HOM05D005652 ORTHO05D007300 2.5e-38 161.8 85 91.8
Solyc12g096120.2 Solanum lycopersicum HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Sopen12g032000 Solanum pennellii HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
PGSC0003DMG400029291 Solanum tuberosum HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
TWI12G1472 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
TWI56G0667 Tripterygium wilfordii HOM05D005652 ORTHO05D007300 2.5e-38 161.8 83 95.2
Aa31LG4G7830 Aethionema arabicum HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
BcaB02g07127 Brassica carinata HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
BcaC03g15763 Brassica carinata HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
BcaC08g45458 Brassica carinata HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
A07p27870 Brassica napus HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
C06p30860 Brassica napus HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
BolC6t38248H Brassica oleracea HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
BraA07t30426Z Brassica rapa HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
Carub.0002s2459 Capsella rubella HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
CARHR071220 Cardamine hirsuta HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
Thhalv10019370m.g Eutrema salsugineum HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
FvH4_2g26390 Fragaria vesca HOM05D005652 ORTHO05D007300 3.2e-38 161.4 85 91.8
Gohir.A02G074200 Gossypium hirsutum HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 94.0
SalBow7G3105 Salvia bowleyana HOM05D005652 ORTHO05D007300 3.2e-38 161.4 83 94.0
Sp5g32880 Schrenkiella parvula HOM05D005652 ORTHO05D007300 3.2e-38 161.4 84 92.9
Hund27043 Selenicereus undatus HOM05D005652 ORTHO05D007300 3.2e-38 161.4 83 94.0
Sc23g0000830 Simmondsia chinensis HOM05D005652 ORTHO05D007300 3.2e-38 161.4 86 90.7
AL2G37930 Arabidopsis lyrata HOM05D005652 ORTHO05D007300 4.2e-38 161.0 83 94.0
BcaB05g25069 Brassica carinata HOM05D005652 ORTHO05D007300 4.2e-38 161.0 83 94.0
Oeu050252.1 Olea europaea HOM05D005652 ORTHO05D007300 5.5e-38 160.6 83 94.0
Prupe.1G503300 Prunus persica HOM05D005652 ORTHO05D007300 5.5e-38 160.6 83 94.0
TPR.G8501 Trifolium pratense HOM05D005652 ORTHO05D007300 5.5e-38 160.6 83 94.0
Gohir.D02G081400 Gossypium hirsutum HOM05D005652 ORTHO05D007300 9.4e-38 159.8 84 94.0
unitig_37.g12684 Utricularia gibba HOM05D005652 ORTHO05D007300 9.4e-38 159.8 83 94.0
CAN.G1483.5 Capsicum annuum HOM05D005652 ORTHO05D007300 1.2e-37 159.5 82 95.1
Migut.N03303 Erythranthe guttata HOM05D005652 ORTHO05D007300 1.2e-37 159.5 83 94.0
Nitab4.5_0014082g0020 Nicotiana tabacum HOM05D005652 ORTHO05D007300 1.2e-37 159.5 82 95.1
Peaxi162Scf00876g00433 Petunia axillaris HOM05D005652 ORTHO05D007300 1.2e-37 159.5 82 95.1
Solyc08g075780.4 Solanum lycopersicum HOM05D005652 ORTHO05D007300 1.2e-37 159.5 82 95.1
Zm00001eb140360 Zea mays HOM05D005652 ORTHO05D007300 1.2e-37 159.5 86 88.4
Ah.05g172270 Amaranthus hybridus HOM05D005652 ORTHO05D007300 1.6e-37 159.1 83 92.8
CBR_g44443 Chara braunii HOM05D005652 ORTHO05D007300 2.1e-37 158.7 81 95.1
EL10Ac1g00017 Beta vulgaris HOM05D005652 ORTHO05D007300 2.7e-37 158.3 86 88.4
Lsat_1_v5_gn_5_65281 Lactuca sativa HOM05D005652 ORTHO05D007300 2.7e-37 158.3 84 91.7
ECA238G1260 Erigeron canadensis HOM05D005652 ORTHO05D007300 3.6e-37 157.9 82 93.9
MSTRG.1473 Avicennia marina HOM05D005652 ORTHO05D007300 6.1e-37 157.1 81 95.1
Eucgr.F03755 Eucalyptus grandis HOM05D005652 ORTHO05D007300 6.1e-37 157.1 81 95.1
Os01g0962400 Oryza sativa ssp. japonica HOM05D005652 ORTHO05D007300 6.1e-37 157.1 84 90.5
SGA_v2.0_scaffold24G10489 Striga asiatica HOM05D005652 ORTHO05D007300 6.1e-37 157.1 81 95.1
SMO147G0269 Selaginella moellendorffii HOM05D005652 ORTHO05D007300 1.0e-36 156.4 83 91.6
Haze_00495 Corylus avellana HOM05D000102 ORTHO05D003793 1.4e-36 156.0 81 93.8
Migut.C01167 Erythranthe guttata HOM05D005652 ORTHO05D007300 1.1e-35 152.9 80 93.8
Actinidia02604 Actinidia chinensis HOM05D005652 ORTHO05D007300 2.2e-34 148.7 104 75.0
FAN15G0151 Fragaria x ananassa HOM05D000102 ORTHO05D003793 1.1e-33 146.4 109 71.6
Haze_27250 Corylus avellana HOM05D005652 ORTHO05D007300 3.8e-31 137.9 81 79.0
PRCOL_00001930 Prasinoderma coloniale HOM05D005652 ORTHO05D007300 1.6e-29 132.5 81 84.0
CAN.G947.38 Capsicum annuum HOM05D005652 ORTHO05D007300 7.5e-27 123.6 63 95.2
AUR62023629 Chenopodium quinoa HOM05D000102 ORTHO05D003793 7.5e-27 123.6 63 95.2
Rhsim11G0066600 Rhododendron simsii HOM05D005652 ORTHO05D007300 7.5e-27 123.6 63 95.2
Oeu026729.1 Olea europaea HOM05D005652 ORTHO05D007300 9.7e-27 123.2 64 95.3
QL09p036189 Quercus lobata HOM05D005652 ORTHO05D007300 9.7e-27 123.2 64 95.3
Glyma.13G082800 Glycine max HOM05D005652 ORTHO05D007300 1.1e-25 119.8 63 92.1
SalBow7G1395 Salvia bowleyana HOM05D005652 ORTHO05D007300 3.1e-25 118.2 62 93.5
HPP92_028057 Vanilla planifolia HOM05D005652 ORTHO05D007300 2.2e-23 112.1 80 75.0
Cpa.g.sc36.14 Carica papaya HOM05D005652 ORTHO05D007300 6.8e-20 100.5 63 82.5
COL.COLO4_38344 Corchorus olitorius HOM05D005652 ORTHO05D007300 1.5e-19 99.4 53 92.5
AUR62004713 Chenopodium quinoa HOM05D005652 ORTHO05D007300 2.6e-19 98.6 52 92.3
Oeu062544.1 Olea europaea HOM05D005652 ORTHO05D007300 9.8e-19 96.7 62 83.9
BraA02t07181Z Brassica rapa HOM05D005652 ORTHO05D007300 4.1e-17 91.3 63 76.2
Sed0022236 Sechium edule HOM05D005652 ORTHO05D007300 4.1e-17 91.3 86 61.6
BolC2t09520H Brassica oleracea HOM05D005652 ORTHO05D007300 3.5e-16 88.2 44 90.9
Actinidia13808 Actinidia chinensis HOM05D005652 ORTHO05D007300 4.5e-16 87.8 50 86.0
AagrBONN_evm.TU.Sc2ySwM_344.240 Anthoceros agrestis HOM05D005652 ORTHO05D007300 9.5e-14 80.1 43 90.7
TAR381G0412 Trochodendron aralioides HOM05D000102 ORTHO05D003793 1.3e-07 59.7 32 90.6
Dinv20715 Davidia involucrata HOM05D005652 ORTHO05D185765 1.5e-06 56.2 39 74.4


User provided reference genes

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