Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0081s0012 Marchantia polymorpha HOM05D002809 ORTHO05D030117 0.0e+00 1120.1 546 100.0
Mapoly0026s0133 Marchantia polymorpha HOM05D002809 ORTHO05D030117 6.1e-55 219.5 499 32.7
Mapoly0081s0013 Marchantia polymorpha HOM05D002809 ORTHO05D030117 6.4e-28 129.8 476 27.7
Mapoly0027s0129 Marchantia polymorpha HOM05D002809 ORTHO05D030117 1.4e-22 112.1 472 26.1
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 2.3e-17 94.7 300 29.7
Mapoly0063s0077 Marchantia polymorpha HOM05D002809 ORTHO05D004939 1.9e-16 91.7 321 27.1
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 4.3e-16 90.5 444 23.6
Mapoly0005s0092 Marchantia polymorpha HOM05D007753 ORTHO05D009385 5.3e-14 83.6 378 24.6
Pp3c26_14690 Physcomitrium patens HOM05D004302 ORTHO05D004939 1.5e-13 82.0 328 25.0
AagrBONN_evm.TU.Sc2ySwM_228.1930 Anthoceros agrestis HOM05D004302 ORTHO05D004939 5.8e-13 80.1 392 24.5
Nn5g28167 Nelumbo nucifera HOM05D002809 ORTHO05D004939 7.6e-13 79.7 320 24.4
SMO367G1056 Selaginella moellendorffii HOM05D002809 ORTHO05D030467 8.4e-12 76.3 323 27.2
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 3.2e-11 74.3 324 25.3
Pp3c9_6080 Physcomitrium patens HOM05D002809 ORTHO05D004563 4.2e-11 73.9 245 29.8
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 7.1e-11 73.2 321 24.6
ATR0561G071 Amborella trichopoda HOM05D005977 ORTHO05D004563 9.3e-11 72.8 332 25.6
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 1.2e-10 72.4 334 27.2
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.2e-10 72.4 317 24.9
Pp3c22_14550 Physcomitrium patens HOM05D002809 ORTHO05D009385 4.6e-10 70.5 338 26.0
Mapoly0025s0090 Marchantia polymorpha HOM05D002809 ORTHO05D004563 6.0e-10 70.1 238 26.5
Nn4g25520 Nelumbo nucifera HOM05D007162 ORTHO05D007631 1.0e-09 69.3 329 24.0
Pp3c15_17390 Physcomitrium patens HOM05D002809 ORTHO05D004939 2.3e-09 68.2 334 23.1
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 3.0e-09 67.8 325 24.3
Mapoly0002s0187 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.1e-09 67.0 326 24.5
Mapoly0014s0188 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.1e-09 67.0 327 24.8
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 6.6e-09 66.6 346 25.1
PSO017G6955 Papaver somniferum HOM05D002809 ORTHO05D004563 6.6e-09 66.6 363 23.7
Pp3c11_18710 Physcomitrium patens HOM05D004302 ORTHO05D004939 6.6e-09 66.6 121 33.9
Sc02g0009190 Simmondsia chinensis HOM05D005561 ORTHO05D006834 1.5e-08 65.5 104 34.6
Mapoly0019s0019 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.9e-08 65.1 272 26.1
Hund25470 Selenicereus undatus HOM05D002809 ORTHO05D004563 1.9e-08 65.1 348 21.6
Mapoly0006s0114 Marchantia polymorpha HOM05D004302 ORTHO05D010190 2.5e-08 64.7 342 24.0
AagrBONN_evm.TU.Sc2ySwM_362.1176 Anthoceros agrestis HOM05D005500 ORTHO05D006906 5.6e-08 63.5 306 26.1
Sc14g0009090 Simmondsia chinensis HOM05D002809 ORTHO05D004563 5.6e-08 63.5 321 21.8
SMO364G0869 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 1.3e-07 62.4 237 27.0
Manes.13G010700 Manihot esculenta HOM05D002809 ORTHO05D004563 1.6e-07 62.0 221 24.9
Pp3c11_5570 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.6e-07 62.0 187 27.8
Pp3c11_5571 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.6e-07 62.0 187 27.8
Potri.001G057100 Populus trichocarpa HOM05D002809 ORTHO05D004563 1.6e-07 62.0 345 21.4
AagrBONN_evm.TU.Sc2ySwM_117.2091 Anthoceros agrestis HOM05D003005 ORTHO05D004939 2.1e-07 61.6 93 37.6
AagrBONN_evm.TU.Sc2ySwM_362.2328 Anthoceros agrestis HOM05D004302 ORTHO05D009385 2.1e-07 61.6 130 29.2
EL10Ac1g01911 Beta vulgaris HOM05D005561 ORTHO05D006834 2.1e-07 61.6 108 34.3
PSO478G1885 Papaver somniferum HOM05D002809 ORTHO05D004563 2.1e-07 61.6 361 23.0
MBI07_g18750_MAGBIO Magnolia biondii HOM05D002809 ORTHO05D004563 2.8e-07 61.2 330 24.2
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 3.6e-07 60.8 154 31.8
AagrBONN_evm.TU.Sc2ySwM_144.2 Anthoceros agrestis HOM05D005500 ORTHO05D006906 4.8e-07 60.5 272 27.6
PSO170G0624 Papaver somniferum HOM05D007162 ORTHO05D007631 4.8e-07 60.5 328 23.2
Pp3c9_20960 Physcomitrium patens HOM05D002809 ORTHO05D004939 4.8e-07 60.5 271 24.4
SMO351G0091 Selaginella moellendorffii HOM05D005977 ORTHO05D007546 4.8e-07 60.5 116 31.0
ECA232G0027 Erigeron canadensis HOM05D005561 ORTHO05D006834 6.2e-07 60.1 103 34.0
Glyma.06G016400 Glycine max HOM05D005561 ORTHO05D006834 6.2e-07 60.1 105 35.2
SEGI_17583 Sequoiadendron giganteum HOM05D002809 ORTHO05D004563 6.2e-07 60.1 315 23.5
Manes.12G010000 Manihot esculenta HOM05D002809 ORTHO05D004563 8.1e-07 59.7 336 21.4
Phvul.009G012500 Phaseolus vulgaris HOM05D005561 ORTHO05D006834 8.1e-07 59.7 105 34.3
CSS0027936 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 1.1e-06 59.3 105 33.3
CAN.G70.10 Capsicum annuum HOM05D002809 ORTHO05D004563 1.1e-06 59.3 186 25.3
Psat5g096960 Pisum sativum HOM05D002809 ORTHO05D004563 1.1e-06 59.3 336 22.6
SMO239G0172 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 1.4e-06 58.9 299 27.1
Sopen12g034970 Solanum pennellii HOM05D002809 ORTHO05D004563 1.4e-06 58.9 190 24.7
PGSC0003DMG400034305 Solanum tuberosum HOM05D002809 ORTHO05D004563 1.4e-06 58.9 217 24.0
Glyma.04G016300 Glycine max HOM05D005561 ORTHO05D006834 1.8e-06 58.5 105 34.3
Lalb_Chr23g0265661 Lupinus albus HOM05D005561 ORTHO05D006834 1.8e-06 58.5 105 32.4
SMO296G0037 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 1.8e-06 58.5 145 29.0
Hund06095 Selenicereus undatus HOM05D002809 ORTHO05D004563 1.8e-06 58.5 171 26.3
VMungo1309G3038 Vigna mungo HOM05D005561 ORTHO05D006834 1.8e-06 58.5 105 34.3
GSVIVG01010498001 Vitis vinifera HOM05D002809 ORTHO05D004563 1.8e-06 58.5 311 23.8
Dinv38256 Davidia involucrata HOM05D000007 ORTHO05D000017 2.4e-06 58.2 120 29.2
HanXRQChr05g0144831 Helianthus annuus HOM05D005561 ORTHO05D006834 2.4e-06 58.2 101 34.7
Lj3P834T54 Lonicera japonica HOM05D007162 ORTHO05D007631 2.4e-06 58.2 329 22.8
Pp3c25_9030 Physcomitrium patens HOM05D002809 ORTHO05D004939 2.4e-06 58.2 360 22.2
SMO367G0569 Selaginella moellendorffii HOM05D002809 ORTHO05D009091 2.4e-06 58.2 141 29.1
TAR629G1933 Trochodendron aralioides HOM05D002809 ORTHO05D004563 2.4e-06 58.2 320 20.3
Actinidia17061 Actinidia chinensis HOM05D005561 ORTHO05D006834 3.1e-06 57.8 105 33.3
MD06G1007100 Malus domestica HOM05D005561 ORTHO05D006834 3.1e-06 57.8 105 32.4
Manes.02G061000 Manihot esculenta HOM05D004302 ORTHO05D004939 3.1e-06 57.8 283 25.8
Dinv31967 Davidia involucrata HOM05D005561 ORTHO05D006834 4.0e-06 57.4 105 32.4
Gorai.005G165900 Gossypium raimondii HOM05D002809 ORTHO05D004563 4.0e-06 57.4 150 28.7
Mapoly0033s0124 Marchantia polymorpha HOM05D004302 ORTHO05D004939 4.0e-06 57.4 315 24.8
Nitab4.5_0004914g0010 Nicotiana tabacum HOM05D002809 ORTHO05D004563 4.0e-06 57.4 182 25.8
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 4.0e-06 57.4 248 26.6
Sp6g28420 Schrenkiella parvula HOM05D004302 ORTHO05D004939 4.0e-06 57.4 286 26.2
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 4.0e-06 57.4 145 29.0
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 4.0e-06 57.4 323 20.7
Thecc.04G306200 Theobroma cacao HOM05D007162 ORTHO05D007631 4.0e-06 57.4 329 23.4
vmacro21786 Vaccinium macrocarpon HOM05D005561 ORTHO05D006834 4.0e-06 57.4 105 34.3
AagrBONN_evm.TU.Sc2ySwM_369.114 Anthoceros agrestis HOM05D005500 ORTHO05D006906 5.3e-06 57.0 234 29.5
CANSAT78G1184 Cannabis sativa HOM05D007162 ORTHO05D007631 5.3e-06 57.0 330 22.7
TAR376G1058 Trochodendron aralioides HOM05D005561 ORTHO05D006834 5.3e-06 57.0 100 31.0
Actinidia20715 Actinidia chinensis HOM05D002809 ORTHO05D004563 6.9e-06 56.6 339 22.4
AagrBONN_evm.TU.Sc2ySwM_344.315 Anthoceros agrestis HOM05D005500 ORTHO05D006906 6.9e-06 56.6 240 26.7
AagrBONN_evm.TU.Sc2ySwM_344.3439 Anthoceros agrestis HOM05D002809 ORTHO05D004563 6.9e-06 56.6 331 25.1
arahy.Tifrunner.gnm1.ann1.NG9QQJ Arachis hypogaea HOM05D005561 ORTHO05D006834 6.9e-06 56.6 105 31.4
Haze_12431 Corylus avellana HOM05D002809 ORTHO05D004563 6.9e-06 56.6 112 29.5
FAN12G3043 Fragaria x ananassa HOM05D007162 ORTHO05D007631 6.9e-06 56.6 331 23.0
Mapoly0006s0115 Marchantia polymorpha HOM05D002809 ORTHO05D010190 6.9e-06 56.6 313 24.9
Medtr3g115870 Medicago truncatula HOM05D005561 ORTHO05D006834 6.9e-06 56.6 109 33.0
Pp3c3_33090 Physcomitrium patens HOM05D030659 ORTHO05D009385 6.9e-06 56.6 319 25.7
Prupe.1G423100 Prunus persica HOM05D007423 ORTHO05D009091 6.9e-06 56.6 126 32.5
AagrBONN_evm.TU.Sc2ySwM_228.3790 Anthoceros agrestis HOM05D005500 ORTHO05D006906 9.0e-06 56.2 342 23.4
Carub.0006s1385 Capsella rubella HOM05D004302 ORTHO05D004939 9.0e-06 56.2 286 25.9
AUR62035143 Chenopodium quinoa HOM05D005561 ORTHO05D006834 9.0e-06 56.2 105 30.5
AUR62042576 Chenopodium quinoa HOM05D005561 ORTHO05D006834 9.0e-06 56.2 105 30.5
Eucgr.H04635 Eucalyptus grandis HOM05D002809 ORTHO05D004563 9.0e-06 56.2 219 24.2
Lj4C71T2 Lonicera japonica HOM05D007423 ORTHO05D009091 9.0e-06 56.2 129 28.7
SGA_v2.0_scaffold175G39328 Striga asiatica HOM05D005977 ORTHO05D007546 9.0e-06 56.2 165 29.1
TWI12G0330 Tripterygium wilfordii HOM05D007423 ORTHO05D009091 9.0e-06 56.2 124 29.8


User provided reference genes

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