Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 2.0e-258 895.2 430 100.0
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 4.6e-130 468.8 317 66.9
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.3e-128 462.6 311 69.5
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 2.1e-127 459.9 306 69.0
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 3.1e-126 456.1 313 65.5
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.6e-125 453.0 313 65.8
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 5.8e-125 451.8 317 64.7
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 7.5e-125 451.4 310 66.8
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 9.9e-125 451.1 310 67.1
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 8.3e-124 448.0 318 64.5
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 8.3e-124 448.0 312 65.4
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 8.3e-124 448.0 311 65.6
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 1.4e-123 447.2 326 65.6
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 2.4e-123 446.4 322 63.4
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 2.4e-123 446.4 310 66.1
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 4.1e-123 445.7 328 63.4
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 7.1e-123 444.9 343 60.3
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 1.2e-122 444.1 327 63.0
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.6e-122 443.7 311 65.9
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 2.7e-122 443.0 310 64.5
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.7e-122 443.0 310 64.8
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 3.5e-122 442.6 320 63.1
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 3.5e-122 442.6 340 62.1
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 7.8e-122 441.4 310 65.2
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.0e-121 441.0 314 64.6
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 1.0e-121 441.0 321 64.2
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 1.0e-121 441.0 310 65.5
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 2.3e-121 439.9 313 63.9
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 2.3e-121 439.9 313 62.9
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 3.0e-121 439.5 310 65.2
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.9e-121 439.1 312 64.1
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 3.9e-121 439.1 312 63.1
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 8.6e-121 438.0 312 63.8
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.1e-120 437.6 312 63.8
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.5e-120 437.2 310 64.8
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 1.9e-120 436.8 312 62.2
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 2.5e-120 436.4 312 64.1
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.5e-120 436.4 312 64.1
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 2.5e-120 436.4 315 62.9
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 3.3e-120 436.0 311 64.0
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 3.3e-120 436.0 313 64.2
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 4.3e-120 435.6 309 62.8
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 4.3e-120 435.6 316 62.3
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 5.6e-120 435.3 310 65.5
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 7.3e-120 434.9 312 63.1
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 9.5e-120 434.5 304 66.4
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.6e-119 433.7 313 63.6
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.6e-119 433.7 320 61.9
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 2.1e-119 433.3 310 64.8
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 2.1e-119 433.3 316 62.7
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 2.1e-119 433.3 388 54.6
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 2.8e-119 433.0 309 64.4
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.8e-119 433.0 346 58.7
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 3.6e-119 432.6 312 62.8
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 4.7e-119 432.2 311 63.3
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 4.7e-119 432.2 304 65.1
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 4.7e-119 432.2 313 62.6
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 6.2e-119 431.8 313 62.3
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 6.2e-119 431.8 312 62.8
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 6.2e-119 431.8 318 61.0
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 8.1e-119 431.4 314 62.4
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 8.1e-119 431.4 312 63.1
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 8.1e-119 431.4 333 61.3
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 8.1e-119 431.4 306 63.7
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 1.1e-118 431.0 312 62.8
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 1.1e-118 431.0 313 63.3
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.1e-118 431.0 304 63.8
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 1.4e-118 430.6 310 63.5
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 1.8e-118 430.3 304 65.5
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.4e-118 429.9 316 63.6
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 3.1e-118 429.5 392 55.1
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 4.0e-118 429.1 310 63.2
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 5.2e-118 428.7 334 61.1
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 5.2e-118 428.7 312 62.2
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 6.8e-118 428.3 314 62.1
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 6.8e-118 428.3 310 64.5
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 1.5e-117 427.2 316 62.7
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.0e-117 426.8 304 64.8
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.0e-117 426.8 311 63.7
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 2.6e-117 426.4 317 60.6
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 3.4e-117 426.0 309 63.4
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 5.8e-117 425.2 321 62.0
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 5.8e-117 425.2 316 62.0
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 7.6e-117 424.9 316 62.3
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.9e-116 422.9 318 61.6
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 6.4e-116 421.8 311 62.4
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 6.4e-116 421.8 316 62.3
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 6.4e-116 421.8 304 63.2
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 1.1e-115 421.0 316 62.3
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.4e-115 420.6 341 58.1
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.4e-115 419.9 310 63.2
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.4e-115 419.9 310 63.2
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 2.4e-115 419.9 310 62.9
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 9.2e-115 417.9 316 61.7
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.2e-114 417.5 312 62.5
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 3.5e-114 416.0 316 61.7
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.0e-113 414.5 306 61.4
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.0e-113 414.5 312 61.9
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 6.6e-113 411.8 315 60.3
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 1.9e-112 410.2 313 61.0
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 9.6e-112 407.9 310 61.3
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 4.8e-111 405.6 320 59.4
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 1.4e-110 404.1 309 60.8
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 2.4e-110 403.3 324 58.3
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 3.2e-107 392.9 294 60.9
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 7.1e-107 391.7 276 64.1
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.2e-106 391.0 312 58.3
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.4e-102 377.5 311 55.6
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.5e-101 374.0 311 58.5
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.6e-101 373.2 312 59.0
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 4.9e-100 369.0 313 57.5
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.1e-99 367.9 311 54.3
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 2.5e-96 356.7 306 57.2
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 2.0e-93 347.1 304 55.9
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 4.9e-92 342.4 314 51.9
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.1e-87 327.0 441 41.7
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 2.1e-87 327.0 232 62.1
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 4.8e-87 325.9 216 70.4
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.7e-84 317.4 396 42.4
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 2.9e-84 316.6 329 48.0
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 9.3e-83 311.6 212 67.9
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 7.9e-74 282.0 202 60.9
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 8.8e-73 278.5 253 53.0
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 1.4e-70 271.2 193 60.6
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.2e-69 268.1 176 65.3
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 9.4e-67 258.5 313 42.8
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 4.7e-66 256.1 186 61.3
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 1.1e-64 251.5 186 61.3
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.0e-53 214.2 304 42.8
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 4.1e-38 163.3 210 41.4
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 3.7e-31 140.2 84 70.2
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.2e-30 135.6 100 66.0
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 2.7e-29 134.0 322 31.1
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.5e-27 128.3 95 56.8
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.6e-26 123.6 96 57.3
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 2.0e-24 117.9 348 29.0
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 7.0e-22 109.4 91 52.7
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.2e-21 108.6 67 71.6
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 7.8e-21 105.9 80 67.5
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.2e-18 98.6 77 58.4
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 3.7e-15 87.0 202 28.7
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 6.4e-15 86.3 103 51.5
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 1.7e-07 61.6 83 39.8
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.4e-06 56.6 48 56.2


User provided reference genes

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