Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 2.3e-220 768.8 456 100.0
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.0e-63 248.4 453 37.1
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.8e-63 247.7 427 38.6
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 3.4e-43 180.3 431 35.5
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 5.9e-43 179.5 405 33.3
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 2.2e-42 177.6 416 31.7
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.9e-42 177.2 456 35.7
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 8.5e-42 175.6 401 32.7
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 1.1e-41 175.3 414 36.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.1e-41 175.3 424 32.3
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 1.4e-41 174.9 437 33.9
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 1.9e-41 174.5 455 34.3
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.9e-41 174.5 423 32.6
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 3.2e-41 173.7 404 35.4
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 4.2e-41 173.3 444 30.9
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 4.2e-41 173.3 445 33.9
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 7.2e-41 172.6 452 30.1
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.2e-40 171.8 442 35.1
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 2.7e-40 170.6 422 35.1
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 3.6e-40 170.2 443 28.0
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 4.7e-40 169.9 427 30.7
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 4.7e-40 169.9 437 32.3
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 6.1e-40 169.5 446 33.9
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.0e-39 168.7 412 30.8
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.4e-39 168.3 412 30.8
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.4e-39 168.3 450 29.8
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.4e-39 168.3 420 32.1
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.8e-39 167.9 431 33.6
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 1.8e-39 167.9 442 32.6
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.8e-39 167.9 443 32.1
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 2.3e-39 167.5 416 31.2
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 2.3e-39 167.5 429 33.1
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 2.3e-39 167.5 420 32.4
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 5.1e-39 166.4 406 35.2
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 5.1e-39 166.4 407 31.7
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.7e-39 166.0 416 30.3
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.1e-38 165.2 439 31.9
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.0e-38 164.5 398 31.4
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 2.6e-38 164.1 469 32.4
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.6e-38 164.1 448 34.4
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 2.6e-38 164.1 425 33.4
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 4.4e-38 163.3 445 30.3
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 5.7e-38 162.9 399 35.6
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 7.4e-38 162.5 449 29.8
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 7.4e-38 162.5 445 31.5
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 7.4e-38 162.5 402 34.8
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 7.4e-38 162.5 419 35.3
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 9.7e-38 162.2 420 35.5
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 9.7e-38 162.2 445 33.0
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.3e-37 161.8 228 45.2
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 1.3e-37 161.8 410 30.7
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 2.2e-37 161.0 455 29.2
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.8e-37 160.6 403 38.2
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 4.8e-37 159.8 427 32.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 6.3e-37 159.5 422 34.1
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 6.3e-37 159.5 250 43.6
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 8.2e-37 159.1 411 31.4
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 8.2e-37 159.1 395 37.0
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 8.2e-37 159.1 422 34.1
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.1e-36 158.7 473 30.0
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.1e-36 158.7 436 31.4
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.4e-36 158.3 425 34.1
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.4e-36 158.3 443 32.1
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.4e-36 158.3 443 34.3
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.8e-36 157.9 439 32.1
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 1.8e-36 157.9 433 29.8
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.8e-36 157.9 434 32.9
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.4e-36 157.5 427 30.4
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.4e-36 157.5 434 31.6
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 3.1e-36 157.1 397 31.2
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 5.3e-36 156.4 426 33.8
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 7.0e-36 156.0 413 33.9
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 7.0e-36 156.0 435 31.3
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 7.0e-36 156.0 428 33.4
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 9.1e-36 155.6 409 31.8
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.2e-35 155.2 451 29.9
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.5e-35 154.8 418 34.9
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.0e-35 154.5 402 34.8
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 4.5e-35 153.3 289 40.1
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 5.9e-35 152.9 257 36.6
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 7.7e-35 152.5 428 32.9
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 7.7e-35 152.5 402 30.6
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.0e-34 152.1 416 33.4
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.3e-34 151.8 468 30.8
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.2e-34 151.0 428 34.8
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.2e-34 151.0 439 33.5
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 2.9e-34 150.6 418 34.4
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.9e-34 150.6 428 33.4
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 3.8e-34 150.2 403 30.3
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 3.8e-34 150.2 415 33.3
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.0e-34 149.8 439 33.0
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 5.0e-34 149.8 220 46.4
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 5.0e-34 149.8 465 29.5
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 6.5e-34 149.4 443 32.1
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 8.5e-34 149.1 430 33.0
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.1e-33 148.7 432 28.9
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.9e-33 147.9 419 30.3
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.9e-33 147.9 414 30.2
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 2.5e-33 147.5 407 30.5
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 2.5e-33 147.5 410 30.2
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 4.2e-33 146.7 234 38.0
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 5.5e-33 146.4 431 32.7
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.4e-33 145.6 447 29.3
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 9.4e-33 145.6 409 29.6
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.2e-32 145.2 396 34.8
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.2e-32 145.2 404 32.4
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.1e-32 144.4 452 29.0
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 2.1e-32 144.4 399 33.1
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 2.7e-32 144.1 415 33.0
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 1.0e-31 142.1 241 42.7
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.8e-31 141.4 422 28.0
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 3.9e-31 140.2 438 28.5
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.1e-30 138.7 429 31.0
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 9.7e-30 135.6 312 32.4
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 2.2e-29 134.4 236 42.4
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 6.3e-29 132.9 447 29.5
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 8.2e-29 132.5 222 40.1
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.8e-28 131.3 415 28.0
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 9.1e-28 129.0 288 37.5
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 5.9e-27 126.3 375 29.9
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.1e-25 122.1 279 32.3
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.6e-24 118.2 218 41.3
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.1e-24 117.9 507 26.8
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.6e-24 117.1 279 35.1
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.4e-22 110.2 413 30.3
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 5.7e-22 109.8 136 38.2
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.4e-20 104.4 511 28.6
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 3.1e-20 104.0 246 36.6
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 9.1e-20 102.4 287 27.2
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 4.5e-19 100.1 274 27.0
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 2.5e-17 94.4 303 26.1
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 1.6e-16 91.7 429 26.8
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.3e-15 87.8 108 38.0
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.2e-14 85.5 246 38.6
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.8e-13 80.9 57 63.2
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 3.7e-13 80.5 74 54.1
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 5.4e-12 76.6 57 61.4
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.7e-11 74.3 72 50.0
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 4.5e-11 73.6 81 49.4
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 5.9e-11 73.2 269 24.9
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 2.3e-10 71.2 63 50.8
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.8e-08 64.3 63 47.6
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.7e-08 63.5 71 40.8


User provided reference genes

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