Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0080s0030 Marchantia polymorpha HOM05D004749 ORTHO05D005995 8.3e-149 530.4 278 100.0
SEGI_28650 Sequoiadendron giganteum HOM05D004749 ORTHO05D005995 1.8e-95 353.2 268 68.3
CiPaw.02G073100 Carya illinoinensis HOM05D004749 ORTHO05D005995 2.0e-94 349.7 235 72.3
TAR362G1144 Trochodendron aralioides HOM05D004749 ORTHO05D005995 1.3e-93 347.1 250 70.4
Prupe.1G114400 Prunus persica HOM05D004749 ORTHO05D005995 4.9e-93 345.1 242 71.5
MBI19_g03265_MAGBIO Magnolia biondii HOM05D004749 ORTHO05D005995 6.4e-93 344.7 235 71.9
Zm00001eb395880 Zea mays HOM05D004749 ORTHO05D005995 1.1e-92 344.0 253 69.6
FAN22G0862 Fragaria x ananassa HOM05D004749 ORTHO05D005995 1.4e-92 343.6 258 68.2
CiPaw.01G136300 Carya illinoinensis HOM05D004749 ORTHO05D005995 3.2e-92 342.4 262 66.4
FAN12G1239 Fragaria x ananassa HOM05D004749 ORTHO05D005995 3.2e-92 342.4 254 68.9
FvH4_4g12660 Fragaria vesca HOM05D004749 ORTHO05D005995 4.2e-92 342.0 260 68.1
Duzib052G0525 Durio zibethinus HOM05D004749 ORTHO05D005995 5.4e-92 341.7 253 69.2
Duzib151G0494 Durio zibethinus HOM05D004749 ORTHO05D005995 9.3e-92 340.9 253 68.8
Hma1.2p1_1168F.1_g263150 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.2e-91 340.5 235 71.1
Hma1.2p1_4126F.1_g338340 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.2e-91 340.5 235 71.1
Thecc.04G246100 Theobroma cacao HOM05D004749 ORTHO05D005995 1.2e-91 340.5 253 68.8
Gohir.D09G225200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 2.1e-91 339.7 253 68.0
Gorai.006G246700 Gossypium raimondii HOM05D004749 ORTHO05D005995 2.1e-91 339.7 253 68.0
MD12G1007400 Malus domestica HOM05D004749 ORTHO05D005995 2.1e-91 339.7 272 64.3
FAN07G1280 Fragaria x ananassa HOM05D004749 ORTHO05D005995 2.7e-91 339.3 269 65.8
Pp3c8_16870 Physcomitrium patens HOM05D004749 ORTHO05D005995 2.7e-91 339.3 237 70.5
Cc02_g31810 Coffea canephora HOM05D004749 ORTHO05D005995 3.5e-91 339.0 275 64.7
MD16G1150500 Malus domestica HOM05D004749 ORTHO05D005995 3.5e-91 339.0 253 68.8
Migut.A01124 Erythranthe guttata HOM05D004749 ORTHO05D005995 2.3e-90 336.3 235 70.2
RcHm_v2.0_Chr4g0411531 Rosa chinensis HOM05D004749 ORTHO05D005995 2.3e-90 336.3 258 67.4
Sabra10G0114100 Salix brachista HOM05D004749 ORTHO05D005995 3.0e-90 335.9 267 65.2
TAR633G2406 Trochodendron aralioides HOM05D004749 ORTHO05D005995 3.0e-90 335.9 253 68.8
TWI73G0343 Tripterygium wilfordii HOM05D004749 ORTHO05D005995 3.9e-90 335.5 281 62.6
Potri.008G103000 Populus trichocarpa HOM05D004749 ORTHO05D005995 5.1e-90 335.1 235 70.2
Potri.010G148000 Populus trichocarpa HOM05D004749 ORTHO05D005995 6.7e-90 334.7 276 64.5
Gohir.A09G223200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 8.7e-90 334.3 282 61.3
AagrBONN_evm.TU.Sc2ySwM_368.1659 Anthoceros agrestis HOM05D004749 ORTHO05D005995 1.1e-89 334.0 257 69.6
Sed0018873 Sechium edule HOM05D004749 ORTHO05D005995 1.1e-89 334.0 237 68.8
Cpa.g.sc106.97 Carica papaya HOM05D004749 ORTHO05D005995 1.9e-89 333.2 235 68.9
MELO3C008635.2 Cucumis melo HOM05D004749 ORTHO05D005995 2.5e-89 332.8 282 62.1
QL04p048178 Quercus lobata HOM05D004749 ORTHO05D005995 2.5e-89 332.8 254 66.9
Carub.0007s1960 Capsella rubella HOM05D004749 ORTHO05D005995 3.3e-89 332.4 253 68.0
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 3.3e-89 332.4 235 68.9
ClCG11G010380 Citrullus lanatus HOM05D004749 ORTHO05D005995 3.3e-89 332.4 282 62.1
CANSAT11G0071 Cannabis sativa HOM05D004749 ORTHO05D005995 4.3e-89 332.0 272 64.3
CsaV3_2G009980 Cucumis sativus L. HOM05D004749 ORTHO05D005995 4.3e-89 332.0 287 62.4
Lalb_Chr07g0181981 Lupinus albus HOM05D004749 ORTHO05D005995 4.3e-89 332.0 281 61.6
arahy.Tifrunner.gnm1.ann1.CI16ME Arachis hypogaea HOM05D004749 ORTHO05D005995 5.6e-89 331.6 235 68.9
PGSC0003DMG400012333 Solanum tuberosum HOM05D004749 ORTHO05D005995 7.4e-89 331.3 247 67.2
Solyc08g081330.4 Solanum lycopersicum HOM05D004749 ORTHO05D005995 9.6e-89 330.9 247 67.2
COL.COLO4_15791 Corchorus olitorius HOM05D004749 ORTHO05D005995 1.3e-88 330.5 232 70.7
PSO210G7457 Papaver somniferum HOM05D004749 ORTHO05D005995 1.3e-88 330.5 288 61.5
Sopen08g029650 Solanum pennellii HOM05D004749 ORTHO05D005995 1.3e-88 330.5 247 67.2
Actinidia13350 Actinidia chinensis HOM05D004749 ORTHO05D005995 1.6e-88 330.1 279 62.4
Atru.chr4.3050 Acer truncatum HOM05D004749 ORTHO05D005995 2.1e-88 329.7 235 69.4
Sabra08G0077900 Salix brachista HOM05D004749 ORTHO05D005995 2.1e-88 329.7 235 69.4
CSS0022958 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 2.8e-88 329.3 235 67.7
Cfa014134 Carpinus fangiana HOM05D004749 ORTHO05D005995 3.7e-88 328.9 273 62.3
Nn3g21759 Nelumbo nucifera HOM05D004749 ORTHO05D005995 3.7e-88 328.9 277 61.7
CDE02G1224 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 4.8e-88 328.6 253 65.6
Nitab4.5_0001220g0090 Nicotiana tabacum HOM05D004749 ORTHO05D005995 4.8e-88 328.6 252 65.9
PSO210G5482 Papaver somniferum HOM05D004749 ORTHO05D005995 6.2e-88 328.2 272 63.2
Nitab4.5_0006920g0020 Nicotiana tabacum HOM05D004749 ORTHO05D005995 8.1e-88 327.8 252 65.9
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.1e-87 327.4 235 69.8
QL06p012791 Quercus lobata HOM05D004749 ORTHO05D005995 1.4e-87 327.0 271 64.6
THA.LOC104827101 Tarenaya hassleriana HOM05D004749 ORTHO05D005995 1.4e-87 327.0 285 60.7
GSVIVG01034965001 Vitis vinifera HOM05D004749 ORTHO05D005995 1.4e-87 327.0 235 68.5
Aqoxy1G00958 Aquilegia oxysepala HOM05D004749 ORTHO05D005995 2.4e-87 326.2 272 62.5
Hund18596 Selenicereus undatus HOM05D004749 ORTHO05D005995 2.4e-87 326.2 261 65.9
VMungo0720G2504 Vigna mungo HOM05D004749 ORTHO05D005995 3.1e-87 325.9 235 68.1
Haze_01330 Corylus avellana HOM05D004749 ORTHO05D005995 4.0e-87 325.5 247 67.2
Lj4g0011402 Lotus japonicus HOM05D004749 ORTHO05D005995 4.0e-87 325.5 235 68.5
Medtr1g100240 Medicago truncatula HOM05D004749 ORTHO05D005995 5.3e-87 325.1 235 67.2
CAN.G532.7 Capsicum annuum HOM05D004749 ORTHO05D005995 6.9e-87 324.7 274 62.0
Ciclev10005025m.g Citrus clementina HOM05D004749 ORTHO05D005995 6.9e-87 324.7 270 61.9
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 1.2e-86 323.9 239 66.5
Nn4g25537 Nelumbo nucifera HOM05D004749 ORTHO05D005995 1.5e-86 323.6 283 61.1
Sp7g19970 Schrenkiella parvula HOM05D004749 ORTHO05D005995 2.0e-86 323.2 266 62.8
arahy.Tifrunner.gnm1.ann1.YK8CX2 Arachis hypogaea HOM05D004749 ORTHO05D005995 5.8e-86 321.6 286 60.8
EL10Ac7g16373 Beta vulgaris HOM05D004749 ORTHO05D005995 1.3e-85 320.5 253 64.8
Oeu061088.1 Olea europaea HOM05D004749 ORTHO05D005995 2.2e-85 319.7 242 64.9
Actinidia14251 Actinidia chinensis HOM05D004749 ORTHO05D005995 6.4e-85 318.2 213 71.8
FAN17G3131 Fragaria x ananassa HOM05D004749 ORTHO05D005995 6.4e-85 318.2 316 57.0
Sc17g0002650 Simmondsia chinensis HOM05D004749 ORTHO05D005995 8.4e-85 317.8 242 67.8
AUR62005917 Chenopodium quinoa HOM05D004749 ORTHO05D005995 1.1e-84 317.4 232 67.7
Glyma.17G035700 Glycine max HOM05D004749 ORTHO05D005995 1.9e-84 316.6 235 67.2
MSTRG.12116 Avicennia marina HOM05D004749 ORTHO05D005995 3.2e-84 315.8 266 60.5
Eucgr.K01628 Eucalyptus grandis HOM05D004749 ORTHO05D005995 3.2e-84 315.8 278 63.3
Manes.09G084300 Manihot esculenta HOM05D004749 ORTHO05D005995 4.2e-84 315.5 235 66.0
ECA246G2874 Erigeron canadensis HOM05D004749 ORTHO05D005995 5.5e-84 315.1 237 66.7
Rhsim10G0104300 Rhododendron simsii HOM05D004749 ORTHO05D005995 5.5e-84 315.1 232 67.7
AUR62028146 Chenopodium quinoa HOM05D004749 ORTHO05D005995 7.1e-84 314.7 232 67.2
PGR031G3778 Punica granatum HOM05D004749 ORTHO05D005995 9.3e-84 314.3 237 67.5
SalBow1G5780 Salvia bowleyana HOM05D004749 ORTHO05D005995 1.2e-83 313.9 235 65.5
AUR62041770 Chenopodium quinoa HOM05D004749 ORTHO05D005995 1.6e-83 313.5 232 67.2
AT4G21800 Arabidopsis thaliana HOM05D004749 ORTHO05D005995 2.7e-83 312.8 257 64.2
HanXRQChr17g0569351 Helianthus annuus HOM05D004749 ORTHO05D005995 2.7e-83 312.8 235 66.0
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 4.6e-83 312.0 252 63.5
AL7G32130 Arabidopsis lyrata HOM05D004749 ORTHO05D005995 6.0e-83 311.6 257 63.8
CBR_g44475 Chara braunii HOM05D004749 ORTHO05D005995 7.9e-83 311.2 191 78.5
DCAR_026992 Daucus carota HOM05D004749 ORTHO05D005995 7.9e-83 311.2 246 64.6
Glyma.07G237800 Glycine max HOM05D004749 ORTHO05D005995 2.3e-82 309.7 281 59.1
Haze_22859 Corylus avellana HOM05D004749 ORTHO05D005995 3.0e-82 309.3 279 59.1
Psat6g193640 Pisum sativum HOM05D004749 ORTHO05D005995 5.1e-82 308.5 276 59.1
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 5.1e-82 308.5 253 62.8
Aa31LG6G3810 Aethionema arabicum HOM05D004749 ORTHO05D005995 1.5e-81 307.0 191 77.0
CARHR228550 Cardamine hirsuta HOM05D004749 ORTHO05D005995 1.5e-81 307.0 253 63.6
SMO271G0158 Selaginella moellendorffii HOM05D004749 ORTHO05D005995 1.5e-81 307.0 221 70.1
Manes.08G074300 Manihot esculenta HOM05D004749 ORTHO05D005995 2.5e-81 306.2 242 65.7
Lsat_1_v5_gn_9_58140 Lactuca sativa HOM05D004749 ORTHO05D005995 3.3e-81 305.8 237 64.1
vmacro12071 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 1.6e-80 303.5 276 58.3
Peaxi162Scf00074g02033 Petunia axillaris HOM05D004749 ORTHO05D005995 2.8e-80 302.8 279 58.8
Dinv15143 Davidia involucrata HOM05D004749 ORTHO05D005995 3.7e-80 302.4 191 73.8
BolC1t01536H Brassica oleracea HOM05D004749 ORTHO05D005995 6.2e-80 301.6 258 62.4
Phvul.003G116600 Phaseolus vulgaris HOM05D004749 ORTHO05D005995 6.2e-80 301.6 254 61.4
A01p13130 Brassica napus HOM05D004749 ORTHO05D005995 1.4e-79 300.4 258 62.0
BraA01t01257Z Brassica rapa HOM05D004749 ORTHO05D005995 1.4e-79 300.4 258 62.0
BcaNung02248 Brassica carinata HOM05D004749 ORTHO05D005995 2.4e-79 299.7 247 63.2
BcaC09g51199 Brassica carinata HOM05D004749 ORTHO05D005995 4.0e-79 298.9 258 62.0
C01p15820 Brassica napus HOM05D004749 ORTHO05D005995 4.0e-79 298.9 258 62.0
Thhalv10025484m.g Eutrema salsugineum HOM05D004749 ORTHO05D005995 5.3e-79 298.5 259 62.5
MD14G1004700 Malus domestica HOM05D004749 ORTHO05D005995 5.3e-79 298.5 274 59.1
ATR0693G032 Amborella trichopoda HOM05D004749 ORTHO05D005995 7.6e-78 294.7 252 61.9
SalBow7G1269 Salvia bowleyana HOM05D004749 ORTHO05D005995 1.3e-77 293.9 191 71.7
BraA08t33522Z Brassica rapa HOM05D004749 ORTHO05D005995 8.4e-77 291.2 235 63.4
vmacro15173 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 2.7e-75 286.2 293 53.2
MCO13G184 Micromonas commoda HOM05D004749 ORTHO05D005995 1.1e-73 280.8 231 61.9
Cre06.g267150 Chlamydomonas reinhardtii HOM05D004749 ORTHO05D005995 6.3e-72 275.0 225 60.4
Hma1.2p1_0078F.1_g039880 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 3.1e-71 272.7 228 62.3
PRCOL_00000431 Prasinoderma coloniale HOM05D004749 ORTHO05D005995 7.7e-70 268.1 257 54.1
HanXRQChr10g0314441 Helianthus annuus HOM05D004749 ORTHO05D005995 2.9e-69 266.2 239 59.4
HPP92_008940 Vanilla planifolia HOM05D004749 ORTHO05D005995 8.5e-69 264.6 157 80.9
CSS0044945 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 1.5e-65 253.8 235 58.7
Lju912A2T64 Lonicera japonica HOM05D004749 ORTHO05D005995 1.4e-63 247.3 253 54.9
DCAR_030456 Daucus carota HOM05D004749 ORTHO05D005995 7.7e-62 241.5 278 49.3
Hma1.2p1_1400F.1_g280890 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 2.7e-59 233.0 252 52.8
HanXRQChr08g0212681 Helianthus annuus HOM05D004749 ORTHO05D005995 3.9e-58 229.2 190 61.6
Haze_27364 Corylus avellana HOM05D004749 ORTHO05D005995 9.7e-57 224.6 219 50.7
HPP92_008928 Vanilla planifolia HOM05D004749 ORTHO05D005995 8.2e-56 221.5 231 52.8
BcaC01g00741 Brassica carinata HOM05D004749 ORTHO05D005995 9.1e-55 218.0 280 49.3
Cfa026321 Carpinus fangiana HOM05D004749 ORTHO05D005995 7.7e-54 214.9 336 39.9
arahy.Tifrunner.gnm1.ann1.08UNPH Arachis hypogaea HOM05D004749 ORTHO05D005995 1.3e-53 214.2 122 83.6
arahy.Tifrunner.gnm1.ann1.3R6CDR Arachis hypogaea HOM05D004749 ORTHO05D005995 1.3e-53 214.2 122 83.6
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 5.0e-53 212.2 122 81.1
Lj6C561G5 Lonicera japonica HOM05D004749 ORTHO05D005995 3.6e-51 206.1 195 55.4
Psat1g194120 Pisum sativum HOM05D002906 ORTHO05D003211 5.9e-46 188.7 161 56.5
C03p83720 Brassica napus HOM05D004749 ORTHO05D005995 1.5e-44 184.1 202 55.0
PSO063G4024 Papaver somniferum HOM05D004749 ORTHO05D005995 4.0e-42 176.0 226 47.3
BolC3t20652H Brassica oleracea HOM05D004749 ORTHO05D005995 8.8e-34 148.3 202 47.0
unitig_578.g15957 Utricularia gibba HOM05D004749 ORTHO05D005995 1.3e-32 144.4 145 49.7
MD13G1150100 Malus domestica HOM05D004749 ORTHO05D005995 8.6e-21 105.1 118 48.3
unitig_578.g15956 Utricularia gibba HOM05D004749 ORTHO05D005995 9.8e-17 91.7 85 52.9
Lj6A693T62 Lonicera japonica HOM05D004749 ORTHO05D005995 1.3e-16 91.3 129 42.6
A08p15460 Brassica napus HOM05D004749 ORTHO05D005995 3.2e-15 86.7 130 41.5
Psat7g201920 Pisum sativum HOM05D000835 ORTHO05D004825 5.4e-15 85.9 117 41.9
CSS0038246 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 7.8e-14 82.0 149 39.6
TAR374G0424 Trochodendron aralioides HOM05D000090 ORTHO05D001322 5.8e-09 65.9 50 62.0
CARHR228600 Cardamine hirsuta HOM05D004749 ORTHO05D043482 3.7e-08 63.2 55 50.9
C07p51410 Brassica napus HOM05D004749 ORTHO05D005995 5.4e-07 59.3 45 66.7


User provided reference genes

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