Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0080s0014 Marchantia polymorpha HOM05D004310 ORTHO05D005403 5.1e-152 541.2 304 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4433 Anthoceros agrestis HOM05D004310 ORTHO05D005403 6.0e-60 235.3 221 62.0
Pp3c22_11010 Physcomitrium patens HOM05D004310 ORTHO05D005403 2.6e-55 219.9 215 60.0
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 1.1e-50 204.5 217 55.3
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 4.0e-48 196.1 294 46.6
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 9.0e-48 194.9 222 51.4
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 2.3e-43 180.3 279 45.9
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 3.0e-43 179.9 224 50.4
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 1.1e-42 177.9 211 52.1
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 1.5e-42 177.6 226 50.0
CBR_g29554 Chara braunii HOM05D004310 ORTHO05D005403 3.3e-42 176.4 228 49.1
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 5.7e-42 175.6 238 48.3
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 7.4e-42 175.3 227 51.1
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 2.1e-41 173.7 311 42.1
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 3.7e-41 172.9 222 49.5
Sed0010710 Sechium edule HOM05D004310 ORTHO05D005403 6.2e-41 172.2 227 50.7
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 8.2e-41 171.8 212 50.5
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 8.2e-41 171.8 216 50.0
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 1.8e-40 170.6 211 50.7
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 1.8e-40 170.6 302 43.4
Dinv32582 Davidia involucrata HOM05D004310 ORTHO05D005403 2.4e-40 170.2 298 44.3
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 3.1e-40 169.9 211 51.2
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 3.1e-40 169.9 211 51.2
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 3.1e-40 169.9 291 44.3
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 3.1e-40 169.9 213 51.6
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 4.1e-40 169.5 317 42.0
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 4.1e-40 169.5 224 49.1
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 5.3e-40 169.1 280 45.7
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 5.3e-40 169.1 221 48.4
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 6.9e-40 168.7 277 44.8
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 6.9e-40 168.7 144 64.6
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 1.5e-39 167.5 239 47.3
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 2.0e-39 167.2 331 40.8
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 2.0e-39 167.2 235 48.1
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 2.6e-39 166.8 239 47.7
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 2.6e-39 166.8 215 50.7
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 2.6e-39 166.8 215 50.7
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 3.4e-39 166.4 232 48.3
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 3.4e-39 166.4 189 52.9
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 1.3e-38 164.5 305 40.0
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 1.3e-38 164.5 226 48.7
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 1.7e-38 164.1 220 48.6
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 2.2e-38 163.7 227 48.5
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 2.9e-38 163.3 200 51.0
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 6.5e-38 162.2 284 44.0
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 1.4e-37 161.0 215 50.7
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.4e-37 161.0 215 50.7
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 1.4e-37 161.0 209 47.8
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 3.2e-37 159.8 255 43.9
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 4.2e-37 159.5 304 39.8
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 4.2e-37 159.5 248 44.8
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 5.5e-37 159.1 214 47.7
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 1.6e-36 157.5 309 39.2
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 2.1e-36 157.1 229 47.6
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 3.5e-36 156.4 254 45.7
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 4.6e-36 156.0 250 44.4
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 6.1e-36 155.6 189 48.1
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 1.8e-35 154.1 288 44.4
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 2.3e-35 153.7 218 45.9
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 3.0e-35 153.3 289 43.6
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 3.9e-35 152.9 295 45.1
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 5.1e-35 152.5 232 45.7
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 1.1e-34 151.4 248 44.4
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 1.1e-34 151.4 268 41.4
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.5e-34 151.0 225 47.1
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 1.5e-34 151.0 232 43.5
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 2.5e-34 150.2 224 45.1
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 2.5e-34 150.2 228 45.2
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 3.3e-34 149.8 271 40.6
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 5.7e-34 149.1 307 41.7
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 9.7e-34 148.3 279 39.4
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 1.6e-33 147.5 283 40.6
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 1.6e-33 147.5 200 47.5
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 1.6e-33 147.5 261 43.7
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 2.8e-33 146.7 217 45.2
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 6.3e-33 145.6 228 43.9
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 8.2e-33 145.2 144 61.1
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 8.2e-33 145.2 303 40.9
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.1e-32 144.8 269 40.9
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 1.1e-32 144.8 294 41.8
MBI13_g41011_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 1.4e-32 144.4 153 54.9
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 1.8e-32 144.1 332 39.8
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 1.8e-32 144.1 248 41.9
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 1.8e-32 144.1 145 57.9
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 1.8e-32 144.1 230 43.9
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 4.1e-32 142.9 248 41.9
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 5.3e-32 142.5 236 44.1
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 5.3e-32 142.5 200 46.5
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 9.0e-32 141.7 200 46.0
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 1.2e-31 141.4 200 45.5
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 1.2e-31 141.4 303 37.0
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 1.5e-31 141.0 221 46.2
unitig_62.g23796 Utricularia gibba HOM05D004310 ORTHO05D005403 1.5e-31 141.0 339 37.5
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 2.0e-31 140.6 208 45.7
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 3.4e-31 139.8 274 38.7
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 3.4e-31 139.8 145 53.8
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 5.9e-31 139.0 219 44.7
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 5.9e-31 139.0 215 43.3
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 5.9e-31 139.0 208 45.2
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 5.9e-31 139.0 219 44.3
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 7.7e-31 138.7 219 44.7
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 7.7e-31 138.7 294 41.8
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.3e-30 137.9 222 45.5
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 1.7e-30 137.5 226 46.5
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 2.2e-30 137.1 216 45.4
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 3.8e-30 136.3 208 44.7
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 6.5e-30 135.6 222 45.0
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 8.5e-30 135.2 274 35.8
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 8.5e-30 135.2 200 45.0
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 1.4e-29 134.4 271 44.6
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 2.5e-29 133.7 294 41.5
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 3.2e-29 133.3 224 44.2
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 5.5e-29 132.5 270 42.6
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 5.5e-29 132.5 299 37.8
Ah.05g179620 Amaranthus hybridus HOM05D004310 ORTHO05D005403 7.2e-29 132.1 305 37.4
Aa31sc508G10 Aethionema arabicum HOM05D004310 ORTHO05D005403 2.1e-28 130.6 152 48.7
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 2.1e-28 130.6 292 37.3
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 3.6e-28 129.8 218 44.0
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 3.6e-28 129.8 307 37.5
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 3.6e-28 129.8 280 41.1
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 4.6e-28 129.4 259 42.1
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 6.1e-28 129.0 259 42.1
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 7.9e-28 128.6 292 35.6
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 8.8e-27 125.2 280 42.9
Cpa.g.sc148.40 Carica papaya HOM05D004310 ORTHO05D005403 1.5e-26 124.4 219 40.2
MCO02G408 Micromonas commoda HOM05D004310 ORTHO05D005403 1.3e-25 121.3 234 39.7
CARHR249360 Cardamine hirsuta HOM05D004310 ORTHO05D005403 2.8e-25 120.2 180 45.0
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 4.8e-25 119.4 201 45.3
Eucgr.L00085 Eucalyptus grandis HOM05D004310 ORTHO05D005403 5.3e-24 115.9 133 54.9
Lsat_1_v5_gn_8_60321 Lactuca sativa HOM05D004310 ORTHO05D005403 1.7e-17 94.4 60 80.0
Cre07.g322100 Chlamydomonas reinhardtii HOM05D000218 ORTHO05D000125 8.2e-17 92.0 125 45.6
HPP92_024432 Vanilla planifolia HOM05D004310 ORTHO05D005403 1.1e-10 71.6 183 36.6
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 2.0e-10 70.9 178 37.1
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 2.0e-10 70.9 116 44.8
ATR1116G001 Amborella trichopoda HOM05D004310 ORTHO05D005403 2.6e-10 70.5 107 46.7
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 9.7e-10 68.6 118 44.1
arahy.Tifrunner.gnm1.ann1.FB4WK1 Arachis hypogaea HOM05D004310 ORTHO05D005403 1.1e-08 65.1 115 42.6


User provided reference genes

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