Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0080s0010 Marchantia polymorpha HOM05D001846 ORTHO05D003774 2.9e-44 181.4 86 100.0
Mapoly0160s0022 Marchantia polymorpha HOM05D001846 ORTHO05D003774 4.1e-22 107.8 82 58.5
Pp3c17_8370 Physcomitrium patens HOM05D001846 ORTHO05D003774 5.5e-19 97.4 79 57.0
Pp3c17_8420 Physcomitrium patens HOM05D001846 ORTHO05D003774 5.5e-19 97.4 79 57.0
Pp3c17_8470 Physcomitrium patens HOM05D001846 ORTHO05D003774 5.5e-19 97.4 79 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4309 Anthoceros agrestis HOM05D001846 ORTHO05D003774 9.8e-16 86.7 73 54.8
Rhsim03G0019200 Rhododendron simsii HOM05D001846 ORTHO05D003774 1.2e-13 79.7 65 53.8
Thecc.05G157600 Theobroma cacao HOM05D001846 ORTHO05D003774 3.5e-13 78.2 71 52.1
vmacro22357 Vaccinium macrocarpon HOM05D001846 ORTHO05D003774 7.7e-13 77.0 71 50.7
Manes.08G050200 Manihot esculenta HOM05D001846 ORTHO05D003774 1.0e-12 76.6 70 54.3
CAN.G128.11 Capsicum annuum HOM05D001846 ORTHO05D003774 1.3e-12 76.3 71 53.5
Solyc10g080190.1 Solanum lycopersicum HOM05D001846 ORTHO05D003774 1.7e-12 75.9 71 53.5
Sopen10g030800 Solanum pennellii HOM05D001846 ORTHO05D003774 1.7e-12 75.9 71 53.5
Cpa.g.sc9.196 Carica papaya HOM05D001846 ORTHO05D003774 2.9e-12 75.1 71 52.1
GSVIVG01033295001 Vitis vinifera HOM05D001846 ORTHO05D003774 5.0e-12 74.3 71 52.1
CDE05G1688 Ceratophyllum demersum HOM05D001846 ORTHO05D003774 6.6e-12 73.9 70 51.4
CSS0009994 Camellia sinensis var. sinensis HOM05D001846 ORTHO05D003774 8.6e-12 73.6 70 51.4
RcHm_v2.0_Chr3g0482071 Rosa chinensis HOM05D001846 ORTHO05D003774 8.6e-12 73.6 70 50.0
AagrBONN_evm.TU.Sc2ySwM_368.3274 Anthoceros agrestis HOM05D001846 ORTHO05D003774 1.5e-11 72.8 76 43.4
Manes.09G023400 Manihot esculenta HOM05D001846 ORTHO05D003774 1.5e-11 72.8 74 48.6
Sc15g0003620 Simmondsia chinensis HOM05D001846 ORTHO05D003774 1.5e-11 72.8 71 49.3
arahy.Tifrunner.gnm1.ann1.0H2RQJ Arachis hypogaea HOM05D001846 ORTHO05D003774 1.9e-11 72.4 70 50.0
Lalb_Chr25g0287321 Lupinus albus HOM05D001846 ORTHO05D003774 1.9e-11 72.4 70 50.0
arahy.Tifrunner.gnm1.ann1.5G499W Arachis hypogaea HOM05D001846 ORTHO05D003774 2.5e-11 72.0 70 50.0
Gohir.A09G122800 Gossypium hirsutum HOM05D001846 ORTHO05D003774 2.5e-11 72.0 70 50.0
A10p00740 Brassica napus HOM05D001846 ORTHO05D003774 3.3e-11 71.6 81 45.7
BraA10t42350Z Brassica rapa HOM05D001846 ORTHO05D003774 3.3e-11 71.6 81 45.7
FvH4_6g23630 Fragaria vesca HOM05D001846 ORTHO05D003774 3.3e-11 71.6 70 50.0
FAN02G4107 Fragaria x ananassa HOM05D001846 ORTHO05D003774 3.3e-11 71.6 70 50.0
FAN05G3530 Fragaria x ananassa HOM05D001846 ORTHO05D003774 3.3e-11 71.6 70 50.0
FAN05G4626 Fragaria x ananassa HOM05D001846 ORTHO05D003774 3.3e-11 71.6 70 50.0
FAN09G0424 Fragaria x ananassa HOM05D001846 ORTHO05D003774 3.3e-11 71.6 70 50.0
CiPaw.14G117900 Carya illinoinensis HOM05D001846 ORTHO05D003774 4.2e-11 71.2 71 47.9
Dinv01266 Davidia involucrata HOM05D002167 ORTHO05D002342 4.2e-11 71.2 70 47.1
Duzib128G1859 Durio zibethinus HOM05D001846 ORTHO05D003774 4.2e-11 71.2 77 44.2
QL07p000119 Quercus lobata HOM05D001846 ORTHO05D003774 4.2e-11 71.2 70 48.6
PGSC0003DMG400027243 Solanum tuberosum HOM05D001846 ORTHO05D003774 4.2e-11 71.2 71 49.3
Haze_19871 Corylus avellana HOM05D001846 ORTHO05D003774 5.5e-11 70.9 70 47.1
Gohir.D09G119800 Gossypium hirsutum HOM05D001846 ORTHO05D003774 5.5e-11 70.9 70 50.0
Hma1.2p1_2052F.1_g312670 Hydrangea macrophylla HOM05D001846 ORTHO05D003774 5.5e-11 70.9 71 47.9
MD12G1077000 Malus domestica HOM05D001846 ORTHO05D003774 5.5e-11 70.9 70 48.6
Nn2g12103 Nelumbo nucifera HOM05D001846 ORTHO05D003774 5.5e-11 70.9 70 50.0
Sopen04g007660 Solanum pennellii HOM05D001846 ORTHO05D003774 5.5e-11 70.9 71 47.9
BolC5t28861H Brassica oleracea HOM05D001846 ORTHO05D003774 7.2e-11 70.5 81 45.7
COL.COLO4_28243 Corchorus olitorius HOM05D001846 ORTHO05D003774 7.2e-11 70.5 70 47.1
FvH4_3g28670 Fragaria vesca HOM05D001846 ORTHO05D003774 7.2e-11 70.5 70 48.6
FAN11G2379 Fragaria x ananassa HOM05D001846 ORTHO05D003774 7.2e-11 70.5 70 48.6
FAN16G2619 Fragaria x ananassa HOM05D001846 ORTHO05D003774 7.2e-11 70.5 70 48.6
FAN21G1853 Fragaria x ananassa HOM05D001846 ORTHO05D003774 7.2e-11 70.5 70 48.6
FAN25G0942 Fragaria x ananassa HOM05D001846 ORTHO05D003774 7.2e-11 70.5 70 48.6
Lalb_Chr20g0110691 Lupinus albus HOM05D001846 ORTHO05D003774 7.2e-11 70.5 70 51.4
PGR031G0684 Punica granatum HOM05D001846 ORTHO05D003774 7.2e-11 70.5 68 50.0
Sabra16G0057900 Salix brachista HOM05D001846 ORTHO05D003774 7.2e-11 70.5 71 47.9
Thhalv10009224m.g Eutrema salsugineum HOM05D001846 ORTHO05D003774 9.5e-11 70.1 70 48.6
MBI02_g23144_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D003774 9.5e-11 70.1 70 50.0
unitig_746.g26554 Utricularia gibba HOM05D001846 ORTHO05D003774 9.5e-11 70.1 70 50.0
EL10Ac4g10230 Beta vulgaris HOM05D001846 ORTHO05D003774 1.2e-10 69.7 70 47.1
Carub.0001s0104 Capsella rubella HOM05D001846 ORTHO05D003774 1.2e-10 69.7 70 47.1
ClCG04G000060 Citrullus lanatus HOM05D001846 ORTHO05D003774 1.2e-10 69.7 70 45.7
Eucgr.J00758 Eucalyptus grandis HOM05D001846 ORTHO05D003774 1.2e-10 69.7 70 48.6
Prupe.7G063200 Prunus persica HOM05D001846 ORTHO05D003774 1.2e-10 69.7 70 50.0
PGR119G1548 Punica granatum HOM05D001846 ORTHO05D003774 1.2e-10 69.7 70 50.0
HPP92_025508 Vanilla planifolia HOM05D001846 ORTHO05D003774 1.2e-10 69.7 70 50.0
BcaB03g13562 Brassica carinata HOM05D001846 ORTHO05D003774 1.6e-10 69.3 70 48.6
Gohir.D09G118800 Gossypium hirsutum HOM05D001846 ORTHO05D003774 1.6e-10 69.3 70 48.6
RcHm_v2.0_Chr6g0302961 Rosa chinensis HOM05D001846 ORTHO05D003774 1.6e-10 69.3 70 47.1
Atru.chr3.2696 Acer truncatum HOM05D001846 ORTHO05D003774 2.1e-10 68.9 70 48.6
Cfa016827 Carpinus fangiana HOM05D001846 ORTHO05D003774 2.1e-10 68.9 70 45.7
Ca_08464_v3 Cicer arietinum L. HOM05D001846 ORTHO05D003774 2.1e-10 68.9 70 48.6
Gohir.A01G197000 Gossypium hirsutum HOM05D001846 ORTHO05D003774 2.1e-10 68.9 70 48.6
Lj1g0021942 Lotus japonicus HOM05D001846 ORTHO05D003774 2.1e-10 68.9 70 48.6
SHI21525 Sapria himalayana HOM05D001846 ORTHO05D003774 2.1e-10 68.9 75 50.7
DCAR_013597 Daucus carota HOM05D001846 ORTHO05D003774 2.8e-10 68.6 68 50.0
Lalb_Chr01g0017421 Lupinus albus HOM05D001846 ORTHO05D003774 2.8e-10 68.6 70 47.1
AL1G11330 Arabidopsis lyrata HOM05D001846 ORTHO05D003774 3.6e-10 68.2 81 43.2
Eucgr.A02367 Eucalyptus grandis HOM05D001846 ORTHO05D003774 3.6e-10 68.2 68 48.5
Nn7g36256 Nelumbo nucifera HOM05D001846 ORTHO05D003774 3.6e-10 68.2 71 49.3
Potri.006G051900 Populus trichocarpa HOM05D001846 ORTHO05D003774 3.6e-10 68.2 71 46.5
AT1G01170 Arabidopsis thaliana HOM05D001846 ORTHO05D003774 4.7e-10 67.8 80 43.8
Gohir.D01G187200 Gossypium hirsutum HOM05D001846 ORTHO05D003774 4.7e-10 67.8 70 47.1
Gorai.002G230600 Gossypium raimondii HOM05D001846 ORTHO05D003774 4.7e-10 67.8 70 47.1
Potri.016G055200 Populus trichocarpa HOM05D001846 ORTHO05D003774 4.7e-10 67.8 71 46.5
TAR636G1971 Trochodendron aralioides HOM05D001846 ORTHO05D003774 4.7e-10 67.8 71 47.9
FvH4_5g27260 Fragaria vesca HOM05D001846 ORTHO05D003774 6.1e-10 67.4 77 45.5
HanXRQChr10g0288841 Helianthus annuus HOM05D001846 ORTHO05D003774 6.1e-10 67.4 68 47.1
Hma1.2p1_3551F.1_g336700 Hydrangea macrophylla HOM05D001846 ORTHO05D003774 6.1e-10 67.4 70 47.1
RcHm_v2.0_Chr5g0052401 Rosa chinensis HOM05D001846 ORTHO05D003774 6.1e-10 67.4 70 45.7
THA.LOC104802125 Tarenaya hassleriana HOM05D001846 ORTHO05D003774 6.1e-10 67.4 73 47.9
Actinidia09340 Actinidia chinensis HOM05D001846 ORTHO05D003774 8.0e-10 67.0 71 42.3
Ah.06g194040 Amaranthus hybridus HOM05D001846 ORTHO05D003774 8.0e-10 67.0 70 45.7
Aqoxy2G00155 Aquilegia oxysepala HOM05D001846 ORTHO05D003774 8.0e-10 67.0 71 49.3
EL10Ac3g07079 Beta vulgaris HOM05D001846 ORTHO05D003774 8.0e-10 67.0 73 45.2
CiPaw.13G159000 Carya illinoinensis HOM05D001846 ORTHO05D003774 8.0e-10 67.0 70 45.7
ClCG03G009980 Citrullus lanatus HOM05D001846 ORTHO05D003774 8.0e-10 67.0 70 44.3
FAN13G3139 Fragaria x ananassa HOM05D001846 ORTHO05D003774 8.0e-10 67.0 70 47.1
FAN18G3025 Fragaria x ananassa HOM05D001846 ORTHO05D003774 8.0e-10 67.0 70 47.1
Lsat_1_v5_gn_2_113881 Lactuca sativa HOM05D001846 ORTHO05D003774 8.0e-10 67.0 74 45.9
Lsat_1_v5_gn_4_137940 Lactuca sativa HOM05D001846 ORTHO05D003774 8.0e-10 67.0 74 45.9
Os02g0609200 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 8.0e-10 67.0 71 49.3
Sabra06G0036500 Salix brachista HOM05D001846 ORTHO05D003774 8.0e-10 67.0 70 45.7
Cc06_g16730 Coffea canephora HOM05D001846 ORTHO05D003774 1.0e-09 66.6 70 47.1
Duzib093G0480 Durio zibethinus HOM05D001846 ORTHO05D003774 1.0e-09 66.6 70 47.1
TAR226G0002 Trochodendron aralioides HOM05D001846 ORTHO05D003774 1.0e-09 66.6 71 46.5
TAR633G0159 Trochodendron aralioides HOM05D000127 ORTHO05D005284 1.0e-09 66.6 70 47.1
CARHR001300 Cardamine hirsuta HOM05D001846 ORTHO05D003774 1.4e-09 66.2 81 42.0
MELO3C000003.2 Cucumis melo HOM05D001846 ORTHO05D003774 1.4e-09 66.2 70 44.3
Nn2g15272 Nelumbo nucifera HOM05D001846 ORTHO05D003774 1.4e-09 66.2 70 47.1
TPR.G3734 Trifolium pratense HOM05D001846 ORTHO05D003774 1.4e-09 66.2 70 45.7
C05p00770 Brassica napus HOM05D001846 ORTHO05D003774 1.8e-09 65.9 84 44.0
ECA236G2859 Erigeron canadensis HOM05D001846 ORTHO05D003774 1.8e-09 65.9 68 45.6
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.3e-09 65.5 70 45.7
CsaV3_4G011760 Cucumis sativus L. HOM05D001846 ORTHO05D003774 2.3e-09 65.5 70 44.3
Glyma.19G121800 Glycine max HOM05D001846 ORTHO05D003774 2.3e-09 65.5 70 45.7
Medtr4g097550 Medicago truncatula HOM05D001846 ORTHO05D003774 2.3e-09 65.5 70 45.7
Medtr7g091770 Medicago truncatula HOM05D001846 ORTHO05D003774 2.3e-09 65.5 70 45.7
Nitab4.5_0009344g0040 Nicotiana tabacum HOM05D001846 ORTHO05D003774 2.3e-09 65.5 79 44.3
Oeu008921.2 Olea europaea HOM05D001846 ORTHO05D003774 2.3e-09 65.5 70 45.7
Os04g0497300 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 2.3e-09 65.5 71 47.9
Hund07499 Selenicereus undatus HOM05D001846 ORTHO05D003774 2.3e-09 65.5 68 50.0
THA.LOC104824447 Tarenaya hassleriana HOM05D001846 ORTHO05D003774 2.3e-09 65.5 73 46.6
Lsat_1_v5_gn_8_81481 Lactuca sativa HOM05D001846 ORTHO05D003774 3.0e-09 65.1 68 45.6
Haze_23153 Corylus avellana HOM05D001846 ORTHO05D003774 4.0e-09 64.7 70 45.7
Haze_23154 Corylus avellana HOM05D001846 ORTHO05D003774 4.0e-09 64.7 70 45.7
Glyma.03G004700 Glycine max HOM05D001846 ORTHO05D003774 4.0e-09 64.7 70 44.3
Glyma.08G231900 Glycine max HOM05D001846 ORTHO05D003774 4.0e-09 64.7 71 43.7
Aqoxy2G00797 Aquilegia oxysepala HOM05D001846 ORTHO05D003774 5.2e-09 64.3 68 47.1
CiPaw.09G037500 Carya illinoinensis HOM05D001846 ORTHO05D003774 5.2e-09 64.3 70 47.1
HanXRQChr11g0336651 Helianthus annuus HOM05D001846 ORTHO05D003774 5.2e-09 64.3 68 45.6
PSO210G2678 Papaver somniferum HOM05D001846 ORTHO05D003774 5.2e-09 64.3 68 48.5
PSO384G3859 Papaver somniferum HOM05D001846 ORTHO05D003774 5.2e-09 64.3 68 48.5
RcHm_v2.0_Chr3g0482031 Rosa chinensis HOM05D001846 ORTHO05D003774 5.2e-09 64.3 74 45.9
Os06g0114500 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 6.8e-09 63.9 70 44.3
Phvul.001G134700 Phaseolus vulgaris HOM05D001846 ORTHO05D003774 6.8e-09 63.9 70 42.9
Rhsim04G0102100 Rhododendron simsii HOM05D001846 ORTHO05D003774 6.8e-09 63.9 70 42.9
PSO339G0462 Papaver somniferum HOM05D001846 ORTHO05D003774 8.9e-09 63.5 68 48.5
Psat3g072440 Pisum sativum HOM05D001846 ORTHO05D003774 8.9e-09 63.5 70 44.3
ECA247G3039 Erigeron canadensis HOM05D001846 ORTHO05D003774 1.2e-08 63.2 68 45.6
Nitab4.5_0006458g0010 Nicotiana tabacum HOM05D001846 ORTHO05D003774 1.2e-08 63.2 84 42.9
Os06g0115100 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 1.2e-08 63.2 68 44.1
Peaxi162Scf00493g00214 Petunia axillaris HOM05D001846 ORTHO05D003774 1.2e-08 63.2 82 43.9
PGSC0003DMG400023685 Solanum tuberosum HOM05D001846 ORTHO05D003774 1.2e-08 63.2 75 46.7
AUR62000138 Chenopodium quinoa HOM05D001846 ORTHO05D003774 1.5e-08 62.8 70 42.9
Glyma.15G218000 Glycine max HOM05D001846 ORTHO05D003774 1.5e-08 62.8 70 42.9
Sed0010215 Sechium edule HOM05D001846 ORTHO05D003774 1.5e-08 62.8 70 44.3
Sc16g0011410 Simmondsia chinensis HOM05D001846 ORTHO05D003774 1.5e-08 62.8 68 47.1
TWI53G2000 Tripterygium wilfordii HOM05D001846 ORTHO05D003774 1.5e-08 62.8 68 50.0
vmacro09080 Vaccinium macrocarpon HOM05D001846 ORTHO05D003774 1.5e-08 62.8 70 41.4
CAN.G676.56 Capsicum annuum HOM05D001846 ORTHO05D003774 2.0e-08 62.4 71 46.5
CARHR249470 Cardamine hirsuta HOM05D001846 ORTHO05D003774 2.0e-08 62.4 74 43.2
PSO210G3032 Papaver somniferum HOM05D001846 ORTHO05D003774 2.0e-08 62.4 68 47.1
ATR0315G149 Amborella trichopoda HOM05D001846 ORTHO05D003774 2.6e-08 62.0 70 45.7
SalBow1G4982 Salvia bowleyana HOM05D001846 ORTHO05D003774 2.6e-08 62.0 70 45.7
SalBow6G3429 Salvia bowleyana HOM05D001846 ORTHO05D003774 2.6e-08 62.0 70 41.4
FAN04G1255 Fragaria x ananassa HOM05D001846 ORTHO05D003774 3.4e-08 61.6 63 46.0
Nitab4.5_0000082g0100 Nicotiana tabacum HOM05D001846 ORTHO05D003774 3.4e-08 61.6 76 46.1
Aa31LG1G10540 Aethionema arabicum HOM05D001846 ORTHO05D003774 4.4e-08 61.2 85 43.5
ATR0064G113 Amborella trichopoda HOM05D001846 ORTHO05D003774 4.4e-08 61.2 70 45.7
AL6G52600 Arabidopsis lyrata HOM05D001846 ORTHO05D003774 4.4e-08 61.2 68 45.6
AUR62019318 Chenopodium quinoa HOM05D001846 ORTHO05D003774 4.4e-08 61.2 70 41.4
TWI74G0108 Tripterygium wilfordii HOM05D001846 ORTHO05D003774 4.4e-08 61.2 68 48.5
Migut.K00085 Erythranthe guttata HOM05D001846 ORTHO05D003774 7.5e-08 60.5 70 42.9
Os11g0161200 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D003774 7.5e-08 60.5 68 42.6
CSS0016792 Camellia sinensis var. sinensis HOM05D001846 ORTHO05D003774 9.8e-08 60.1 70 40.0
QL01p004422 Quercus lobata HOM05D001846 ORTHO05D003774 9.8e-08 60.1 51 51.0
QL01p004522 Quercus lobata HOM05D001846 ORTHO05D003774 9.8e-08 60.1 51 51.0
CSS0045043 Camellia sinensis var. sinensis HOM05D001846 ORTHO05D003774 1.3e-07 59.7 70 47.1
GSVIVG01034693001 Vitis vinifera HOM05D001846 ORTHO05D003774 2.8e-07 58.5 71 42.3
Thhalv10029140m.g Eutrema salsugineum HOM05D001846 ORTHO05D003774 3.7e-07 58.2 68 42.6
Sp6g01260 Schrenkiella parvula HOM05D001846 ORTHO05D003774 3.7e-07 58.2 70 42.9
Prupe.4G251500 Prunus persica HOM05D001846 ORTHO05D003774 4.9e-07 57.8 68 45.6
CDE05G2359 Ceratophyllum demersum HOM05D001846 ORTHO05D003774 6.3e-07 57.4 62 45.2
AT4G00860 Arabidopsis thaliana HOM05D001846 ORTHO05D003774 1.1e-06 56.6 68 42.6
Carub.0006s3588 Capsella rubella HOM05D001846 ORTHO05D003774 1.1e-06 56.6 68 41.2
Nitab4.5_0000733g0130 Nicotiana tabacum HOM05D001846 ORTHO05D003774 1.1e-06 56.6 42 57.1
Oeu017948.1 Olea europaea HOM05D001846 ORTHO05D003774 1.1e-06 56.6 85 37.6
CBR_g18721 Chara braunii HOM05D001846 ORTHO05D003774 1.8e-06 55.8 71 40.8
Nitab4.5_0003562g0030 Nicotiana tabacum HOM05D001846 ORTHO05D003774 1.8e-06 55.8 84 40.5
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 2.4e-06 55.5 76 40.8
A03p31700 Brassica napus HOM05D001846 ORTHO05D003774 3.1e-06 55.1 68 41.2
CBR_g18720 Chara braunii HOM05D001846 ORTHO05D003774 3.1e-06 55.1 67 43.3
BolC3t16147H Brassica oleracea HOM05D001846 ORTHO05D003774 7.0e-06 53.9 68 41.2


User provided reference genes

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