Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.0e-134 483.4 247 100.0
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.9e-49 199.1 203 50.2
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 4.3e-32 142.5 239 35.6
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 5.6e-32 142.1 229 36.7
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 7.3e-32 141.7 238 37.0
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.6e-31 140.6 234 38.0
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 2.1e-31 140.2 210 37.6
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.1e-31 140.2 262 34.7
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 2.8e-31 139.8 210 38.1
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 2.8e-31 139.8 243 36.6
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.8e-31 139.8 232 36.6
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.6e-31 139.4 241 36.5
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.6e-31 139.4 243 35.4
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 3.6e-31 139.4 230 36.5
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.6e-31 139.4 228 37.3
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 3.6e-31 139.4 244 34.0
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 4.8e-31 139.0 234 38.0
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 4.8e-31 139.0 210 37.6
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 4.8e-31 139.0 213 36.2
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 4.8e-31 139.0 131 48.1
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 6.2e-31 138.7 215 38.6
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 6.2e-31 138.7 210 38.6
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 6.2e-31 138.7 215 38.6
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 8.1e-31 138.3 230 37.8
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 8.1e-31 138.3 208 38.5
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 8.1e-31 138.3 208 38.5
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 8.1e-31 138.3 252 34.5
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 8.1e-31 138.3 210 38.1
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 1.1e-30 137.9 210 37.6
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 1.1e-30 137.9 215 38.6
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 1.1e-30 137.9 215 38.6
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-30 137.9 210 39.5
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.1e-30 137.9 210 39.5
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 1.4e-30 137.5 216 38.4
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.4e-30 137.5 216 38.4
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 1.4e-30 137.5 216 38.4
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 1.4e-30 137.5 216 38.4
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 1.4e-30 137.5 216 38.4
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 1.4e-30 137.5 229 39.7
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.4e-30 137.5 215 37.2
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.4e-30 137.5 226 35.4
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.8e-30 137.1 210 39.0
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.8e-30 137.1 215 37.7
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 2.4e-30 136.7 210 39.0
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 2.4e-30 136.7 209 37.8
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.4e-30 136.7 208 36.1
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 3.1e-30 136.3 215 37.7
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 4.0e-30 136.0 224 37.1
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 4.0e-30 136.0 215 36.7
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 4.0e-30 136.0 217 35.5
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 4.0e-30 136.0 210 38.1
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 4.0e-30 136.0 215 37.2
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.0e-30 136.0 213 36.2
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 4.0e-30 136.0 210 37.6
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 5.3e-30 135.6 243 34.6
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 6.9e-30 135.2 210 37.1
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 6.9e-30 135.2 210 37.1
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 6.9e-30 135.2 215 36.7
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 6.9e-30 135.2 217 35.5
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 6.9e-30 135.2 214 36.9
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 6.9e-30 135.2 208 37.0
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 6.9e-30 135.2 215 36.3
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 9.0e-30 134.8 216 36.6
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 9.0e-30 134.8 210 36.7
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 9.0e-30 134.8 211 37.4
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 9.0e-30 134.8 210 37.6
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 9.0e-30 134.8 216 36.1
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 9.0e-30 134.8 215 35.8
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 9.0e-30 134.8 210 37.1
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 9.0e-30 134.8 210 37.1
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 9.0e-30 134.8 210 37.6
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.2e-29 134.4 207 35.7
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.2e-29 134.4 130 47.7
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.2e-29 134.4 130 47.7
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 1.2e-29 134.4 210 37.6
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.2e-29 134.4 216 37.5
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.5e-29 134.0 225 35.6
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.5e-29 134.0 259 34.7
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 1.5e-29 134.0 215 36.7
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.5e-29 134.0 216 35.6
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 1.5e-29 134.0 130 47.7
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.5e-29 134.0 130 47.7
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 2.0e-29 133.7 195 41.0
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 2.0e-29 133.7 208 37.0
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.0e-29 133.7 210 37.6
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 2.0e-29 133.7 215 35.3
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 2.0e-29 133.7 210 38.1
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 2.0e-29 133.7 232 35.3
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.6e-29 133.3 208 35.6
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 2.6e-29 133.3 210 37.1
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 2.6e-29 133.3 215 35.3
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 2.6e-29 133.3 210 37.1
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 2.6e-29 133.3 210 37.1
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 3.4e-29 132.9 241 35.3
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 3.4e-29 132.9 243 34.6
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 4.5e-29 132.5 210 38.1
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 4.5e-29 132.5 215 36.3
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.5e-29 132.5 210 37.1
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.5e-29 132.5 210 37.1
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 4.5e-29 132.5 215 36.3
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 4.5e-29 132.5 243 35.0
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 4.5e-29 132.5 210 37.1
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 4.5e-29 132.5 215 36.7
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 4.5e-29 132.5 210 36.7
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 5.8e-29 132.1 210 37.1
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 5.8e-29 132.1 130 46.9
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 5.8e-29 132.1 232 35.3
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 7.6e-29 131.7 258 32.9
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 7.6e-29 131.7 215 36.3
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 7.6e-29 131.7 217 35.0
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 7.6e-29 131.7 215 36.7
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 7.6e-29 131.7 193 39.9
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 7.6e-29 131.7 217 35.0
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 9.9e-29 131.3 215 35.8
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 9.9e-29 131.3 213 35.2
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 9.9e-29 131.3 254 34.6
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 9.9e-29 131.3 244 33.2
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 9.9e-29 131.3 210 36.7
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 9.9e-29 131.3 209 37.3
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 9.9e-29 131.3 209 37.3
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 1.3e-28 131.0 210 37.6
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 1.3e-28 131.0 209 35.9
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 1.7e-28 130.6 209 36.4
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.7e-28 130.6 215 35.8
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.7e-28 130.6 210 36.2
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.7e-28 130.6 210 35.7
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.7e-28 130.6 210 35.7
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.7e-28 130.6 130 46.2
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.7e-28 130.6 130 46.2
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 1.7e-28 130.6 135 47.4
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.2e-28 130.2 216 35.6
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 2.9e-28 129.8 210 36.7
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.9e-28 129.8 209 35.9
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.8e-28 129.4 215 35.8
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.8e-28 129.4 215 36.3
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 3.8e-28 129.4 209 35.9
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 4.9e-28 129.0 210 37.1
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 4.9e-28 129.0 240 35.0
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 4.9e-28 129.0 215 34.0
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 4.9e-28 129.0 209 35.4
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.1e-27 127.9 130 46.2
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-27 127.9 128 47.7
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.1e-27 127.9 128 47.7
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.2e-27 125.9 213 34.3
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.0e-25 121.3 227 34.4
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 7.4e-24 115.2 227 30.8
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 1.6e-23 114.0 263 31.2
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 2.1e-23 113.6 130 43.1
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.1e-22 111.3 115 45.2
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 2.0e-21 107.1 113 46.0
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.9e-19 100.5 155 34.8
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 4.2e-19 99.4 208 32.2
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 6.0e-18 95.5 156 34.6
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.0e-17 93.2 154 34.4
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.0e-17 93.2 154 34.4
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.7e-08 62.4 96 32.3
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 9.7e-08 61.6 47 55.3
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 2.8e-07 60.1 47 53.2
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.8e-07 59.3 57 45.6
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 6.3e-07 58.9 47 51.1


User provided reference genes

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