Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 0.0e+00 2386.3 1191 100.0
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.9e-125 454.9 1218 29.6
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 7.4e-122 443.0 1214 29.7
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 9.7e-122 442.6 1223 30.3
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 1.3e-121 442.2 1210 30.1
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 1.6e-119 435.3 1190 29.1
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 2.6e-119 434.5 1217 29.7
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 5.0e-118 430.3 1210 29.0
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 9.4e-117 426.0 1221 29.3
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 2.7e-111 407.9 1216 29.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 1.1e-109 402.5 1196 28.3
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 6.8e-107 393.3 1200 28.0
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 7.5e-106 389.8 1201 27.9
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 9.8e-106 389.4 1206 27.5
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.7e-105 388.7 1204 27.5
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.2e-105 388.3 1188 27.9
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 3.7e-105 387.5 1204 28.2
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.4e-104 385.6 1189 27.8
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 2.4e-104 384.8 1190 28.6
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 9.1e-104 382.9 1196 27.5
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 7.7e-103 379.8 1202 27.8
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 1.0e-102 379.4 1197 27.2
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.3e-102 379.0 1193 27.0
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 2.5e-101 374.8 1200 27.8
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 7.2e-101 373.2 1196 28.2
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 1.6e-100 372.1 1196 28.0
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 3.6e-100 370.9 1199 28.3
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 4.7e-100 370.5 1199 28.3
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.3e-99 368.2 1200 27.4
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 2.3e-99 368.2 1208 27.7
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 8.8e-99 366.3 1185 26.5
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 2.0e-98 365.2 1191 26.6
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 1.7e-97 362.1 1201 27.6
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.7e-97 362.1 1209 26.1
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.4e-96 359.0 1093 28.2
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 5.9e-95 353.6 1223 27.1
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 7.7e-95 353.2 1203 26.8
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 1.0e-94 352.8 1197 25.6
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 2.3e-94 351.7 1184 26.9
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 5.0e-94 350.5 1204 27.1
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 6.6e-94 350.1 1163 28.7
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 8.6e-94 349.7 1191 26.7
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 8.6e-94 349.7 1185 26.1
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 9.5e-93 346.3 1088 28.8
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 1.6e-92 345.5 1205 25.1
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 6.1e-92 343.6 688 34.2
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 8.0e-92 343.2 1186 26.8
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.4e-90 337.8 1152 28.0
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 5.7e-90 337.0 1197 25.1
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 7.5e-90 336.7 1199 25.8
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 2.2e-89 335.1 1204 26.7
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 2.9e-89 334.7 651 34.9
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 3.7e-89 334.3 1189 26.3
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.1e-88 332.8 740 33.1
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.8e-88 332.0 1197 24.6
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 3.2e-88 331.3 1205 26.0
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 2.0e-87 328.6 1197 24.9
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 3.5e-87 327.8 1200 24.6
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.3e-86 325.9 1216 25.5
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 2.3e-86 325.1 1184 25.1
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 3.3e-85 321.2 683 32.7
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 5.6e-85 320.5 694 31.1
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 9.5e-85 319.7 1202 25.1
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.2e-84 319.3 696 31.3
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 8.0e-84 316.6 1203 23.9
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.8e-83 315.5 1196 26.0
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.5e-82 312.4 1210 25.7
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 5.8e-82 310.5 1173 24.0
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 9.8e-82 309.7 1202 23.9
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.7e-81 308.9 669 32.0
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 4.9e-81 307.4 1136 26.0
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.9e-80 305.4 726 32.9
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.7e-79 301.6 1193 24.9
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 4.6e-79 300.8 710 31.4
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.0e-78 299.7 721 31.8
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.6e-78 297.0 711 31.1
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.1e-77 296.2 693 30.9
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 7.3e-77 293.5 1193 24.8
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 1.8e-75 288.9 656 31.2
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-75 288.5 731 30.5
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.1e-75 288.1 678 29.5
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.5e-74 285.8 1140 24.7
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.4e-74 284.6 716 31.0
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 7.5e-74 283.5 738 29.8
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 4.9e-73 280.8 931 27.1
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 6.4e-73 280.4 1033 27.7
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 6.4e-73 280.4 1201 23.6
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 8.3e-73 280.0 1103 24.4
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.4e-72 279.3 1179 25.0
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.3e-69 268.1 731 29.7
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 9.5e-69 266.5 1188 24.7
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 9.5e-69 266.5 831 28.8
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.1e-67 263.1 1205 23.8
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 4.9e-65 254.2 629 30.2
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.3e-62 245.4 1152 24.2
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 1.9e-56 225.7 553 30.7
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.4e-56 225.3 731 26.5
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 5.4e-56 224.2 837 25.7
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 2.1e-55 222.2 613 28.4
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 5.1e-54 217.6 484 32.0
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 1.2e-50 206.5 817 26.6
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.2e-49 202.2 586 29.7
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.9e-48 199.1 809 24.1
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 7.1e-48 197.2 534 30.5
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 9.9e-42 176.8 1416 19.8
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 6.4e-41 174.1 782 24.0
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.6e-39 169.5 727 25.9
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.1e-39 169.1 394 31.5
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 6.0e-39 167.5 404 29.2
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.8e-38 166.0 419 31.0
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 8.7e-38 163.7 844 23.1
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.5e-37 162.2 156 48.7
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 5.6e-37 161.0 202 43.6
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 2.8e-36 158.7 176 46.0
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.8e-35 156.0 150 51.3
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 3.1e-35 155.2 390 29.0
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 3.4e-34 151.8 259 35.5
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 5.8e-34 151.0 153 47.7
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.1e-32 146.7 272 37.1
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.5e-29 135.6 163 41.1
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 4.3e-29 134.8 144 45.8
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.6e-28 132.9 153 43.8
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 2.6e-26 125.6 377 26.8
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 5.9e-26 124.4 273 34.4
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.2e-23 116.7 362 24.9
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 1.1e-19 103.6 104 50.0
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.4e-19 102.4 127 43.3
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 3.0e-14 85.5 84 42.9
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.2e-12 79.3 254 24.8
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 3.4e-10 72.0 120 30.8
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 7.7e-10 70.9 330 26.1
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 3.6e-07 62.0 81 39.5
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 1.4e-06 60.1 155 28.4


User provided reference genes

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