Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 0.0e+00 1078.9 577 100.0
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 6.2e-98 362.5 587 43.3
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.3e-68 264.2 610 38.7
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 4.5e-64 250.0 601 36.9
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 3.9e-60 236.9 722 32.4
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.4e-57 227.6 597 34.5
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 4.5e-56 223.4 593 33.9
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 6.5e-55 219.5 593 33.9
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 6.5e-55 219.5 598 34.4
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 8.5e-55 219.2 592 34.1
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 4.2e-54 216.9 592 34.0
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 4.2e-54 216.9 596 32.7
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 4.2e-54 216.9 600 36.0
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.2e-53 215.3 614 32.9
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.6e-53 214.9 595 34.6
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.6e-53 214.9 599 34.6
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 3.6e-53 213.8 585 33.0
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 2.3e-52 211.1 593 33.9
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 6.7e-52 209.5 602 33.2
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.5e-51 208.4 596 34.1
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.0e-51 208.0 601 33.8
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 2.5e-51 207.6 605 34.2
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.5e-51 207.6 603 33.7
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.3e-51 207.2 599 34.1
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 9.7e-51 205.7 593 33.2
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 9.7e-51 205.7 601 33.8
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 9.7e-51 205.7 601 34.1
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 8.2e-50 202.6 601 34.1
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.1e-49 202.2 595 34.6
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 1.8e-49 201.4 590 33.7
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 3.1e-49 200.7 598 33.8
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 5.3e-49 199.9 588 33.5
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 9.1e-49 199.1 608 33.9
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.2e-48 198.7 597 33.0
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.2e-48 198.7 590 34.4
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.6e-48 197.6 599 34.1
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 3.4e-48 197.2 616 33.3
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 3.4e-48 197.2 604 33.9
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 4.5e-48 196.8 609 31.7
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.9e-48 196.4 587 34.8
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.7e-47 194.9 608 32.4
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 5.0e-47 193.4 604 31.8
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 8.5e-47 192.6 607 32.1
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.4e-46 191.8 598 33.8
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.9e-46 191.4 594 32.3
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.5e-46 191.0 601 32.1
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 7.2e-46 189.5 608 33.7
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 9.4e-46 189.1 597 32.0
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 9.4e-46 189.1 610 30.7
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 9.4e-46 189.1 595 32.1
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.2e-45 188.7 606 32.3
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.6e-45 188.3 589 33.6
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 4.7e-45 186.8 604 32.1
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 6.1e-45 186.4 596 32.0
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 7.9e-45 186.0 607 33.6
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.8e-44 184.9 606 32.2
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 5.1e-44 183.3 592 33.1
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 5.1e-44 183.3 597 33.3
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 5.1e-44 183.3 610 32.3
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 6.7e-44 183.0 593 34.1
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.1e-43 182.2 443 38.4
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 1.5e-43 181.8 653 31.5
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 3.3e-43 180.6 610 30.7
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 3.3e-43 180.6 603 31.7
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 5.7e-43 179.9 595 31.6
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 7.4e-43 179.5 593 32.7
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 7.4e-43 179.5 599 33.1
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 7.4e-43 179.5 598 32.4
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 7.4e-43 179.5 604 32.1
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 9.7e-43 179.1 590 32.4
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.7e-42 178.3 609 30.5
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.7e-42 177.2 594 33.5
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 6.3e-42 176.4 592 32.3
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 8.2e-42 176.0 601 29.8
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 8.2e-42 176.0 603 32.2
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.1e-41 175.6 599 32.6
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.4e-41 175.3 562 32.7
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.4e-41 175.3 597 31.0
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.8e-41 174.9 598 32.6
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 4.1e-41 173.7 599 31.7
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.3e-41 173.3 583 31.4
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.3e-41 173.3 583 31.4
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.0e-40 171.4 597 30.8
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.0e-40 171.4 597 30.8
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.6e-40 171.0 610 29.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.0e-39 169.1 583 30.7
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.3e-39 168.7 594 30.0
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.2e-39 167.9 587 31.5
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.2e-39 167.9 595 32.8
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 6.5e-39 166.4 531 31.1
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 8.5e-39 166.0 593 29.7
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.4e-38 165.2 566 31.8
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.4e-38 165.2 467 34.7
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.9e-38 164.9 607 30.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.9e-38 164.9 594 31.5
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.9e-38 164.9 606 31.0
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.9e-38 164.9 606 31.4
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.2e-38 163.7 579 32.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 7.2e-38 162.9 590 31.5
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.2e-37 162.2 594 32.0
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.1e-37 161.4 592 31.9
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.1e-37 161.4 668 31.0
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.6e-37 160.6 605 29.1
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 6.1e-37 159.8 576 30.6
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 6.1e-37 159.8 576 30.6
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.0e-36 159.1 605 30.1
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 8.8e-36 156.0 531 31.8
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.5e-35 155.2 596 29.4
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.6e-35 154.5 543 32.0
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 5.7e-35 153.3 486 31.7
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 7.4e-35 152.9 586 29.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 2.2e-34 151.4 595 31.3
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-33 148.7 591 29.3
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 3.1e-33 147.5 558 31.4
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.6e-32 145.2 591 29.3
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 2.0e-32 144.8 585 28.7
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 4.5e-32 143.7 586 29.7
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.3e-31 142.1 474 29.3
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.2e-29 135.6 397 32.2
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 4.1e-25 120.6 697 25.7
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 7.0e-25 119.8 169 45.0
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 2.9e-23 114.4 604 28.1
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.9e-22 111.7 251 36.3
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.9e-22 111.7 327 34.9
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 9.4e-22 109.4 566 27.4
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.2e-21 109.0 426 30.0
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 3.6e-21 107.5 348 33.0
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 5.9e-16 90.1 490 27.3
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.8e-15 87.4 172 37.8
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.8e-15 87.4 425 30.6
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.2e-14 84.0 183 36.6
MCO13G429 Micromonas commoda HOM05D004539 ORTHO05D005482 5.5e-14 83.6 757 24.6
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.6e-13 82.0 266 30.8
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.8e-13 81.3 145 37.2
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.6e-13 80.9 191 35.6
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.0e-12 79.3 192 34.4
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.8e-12 78.6 272 30.1
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.7e-10 70.9 258 33.3
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.9e-07 61.2 367 27.2
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 5.0e-07 60.5 257 27.6
Cre02.g146000 Chlamydomonas reinhardtii HOM05D004539 ORTHO05D005482 5.6e-06 57.0 281 27.0


User provided reference genes

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