Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 3.2e-63 245.0 129 100.0
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 1.8e-53 212.6 122 86.9
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 2.6e-52 208.8 121 86.8
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 1.6e-49 199.5 119 80.7
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 1.6e-49 199.5 123 78.0
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 2.0e-49 199.1 126 76.2
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.6e-49 198.7 123 78.0
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 3.5e-49 198.4 123 78.0
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 4.5e-49 198.0 123 78.0
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 4.5e-49 198.0 123 77.2
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 7.7e-49 197.2 119 79.0
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 7.7e-49 197.2 123 77.2
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 1.0e-48 196.8 123 77.2
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.7e-48 196.1 123 76.4
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 1.7e-48 196.1 122 77.0
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.7e-48 196.1 123 76.4
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.7e-48 196.1 123 76.4
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 1.7e-48 196.1 123 75.6
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 2.2e-48 195.7 118 78.8
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 2.9e-48 195.3 123 75.6
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.9e-48 195.3 123 75.6
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 2.9e-48 195.3 123 75.6
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 2.9e-48 195.3 122 76.2
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.8e-48 194.9 122 77.0
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 3.8e-48 194.9 122 77.0
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 3.8e-48 194.9 123 76.4
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 3.8e-48 194.9 122 77.0
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 5.0e-48 194.5 123 74.8
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 5.0e-48 194.5 118 78.0
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.0e-48 194.5 123 75.6
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 5.0e-48 194.5 123 75.6
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 5.0e-48 194.5 122 77.0
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 5.0e-48 194.5 123 76.4
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 5.0e-48 194.5 123 74.8
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 5.0e-48 194.5 123 75.6
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 6.5e-48 194.1 123 75.6
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 8.5e-48 193.7 122 76.2
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 8.5e-48 193.7 123 74.8
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 8.5e-48 193.7 123 74.8
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 8.5e-48 193.7 117 79.5
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 8.5e-48 193.7 117 79.5
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 8.5e-48 193.7 123 75.6
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 1.1e-47 193.4 123 74.0
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 1.1e-47 193.4 118 79.7
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 1.1e-47 193.4 114 80.7
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.1e-47 193.4 114 80.7
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.1e-47 193.4 114 80.7
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.1e-47 193.4 123 75.6
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.1e-47 193.4 117 79.5
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 1.1e-47 193.4 122 76.2
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 1.1e-47 193.4 122 76.2
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 1.1e-47 193.4 123 75.6
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 1.5e-47 193.0 123 74.0
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.5e-47 193.0 122 74.6
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 1.5e-47 193.0 119 77.3
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 1.5e-47 193.0 123 74.8
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 1.5e-47 193.0 123 74.0
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 1.9e-47 192.6 122 75.4
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 1.9e-47 192.6 123 76.4
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 1.9e-47 192.6 117 77.8
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.9e-47 192.6 117 77.8
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.9e-47 192.6 117 77.8
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 1.9e-47 192.6 123 76.4
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.9e-47 192.6 122 74.6
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 1.9e-47 192.6 123 75.6
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 1.9e-47 192.6 123 76.4
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 2.5e-47 192.2 114 79.8
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 2.5e-47 192.2 120 75.0
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 2.5e-47 192.2 122 77.0
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 2.5e-47 192.2 122 74.6
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 2.5e-47 192.2 123 74.8
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 3.2e-47 191.8 124 72.6
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 3.2e-47 191.8 124 72.6
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 3.2e-47 191.8 124 72.6
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 3.2e-47 191.8 124 72.6
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 3.2e-47 191.8 124 72.6
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 3.2e-47 191.8 124 72.6
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 3.2e-47 191.8 124 72.6
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.2e-47 191.8 123 74.8
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 3.2e-47 191.8 118 76.3
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 3.2e-47 191.8 120 75.0
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 3.2e-47 191.8 122 74.6
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 3.2e-47 191.8 122 75.4
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 3.2e-47 191.8 117 79.5
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 4.2e-47 191.4 123 74.0
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 4.2e-47 191.4 123 74.0
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 4.2e-47 191.4 114 79.8
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 4.2e-47 191.4 123 74.0
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 4.2e-47 191.4 123 74.0
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 4.2e-47 191.4 119 76.5
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 4.2e-47 191.4 119 76.5
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 5.5e-47 191.0 123 74.8
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 5.5e-47 191.0 122 76.2
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 5.5e-47 191.0 122 73.8
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 5.5e-47 191.0 122 73.8
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 7.2e-47 190.7 124 71.8
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 7.2e-47 190.7 124 71.8
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 7.2e-47 190.7 124 71.8
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 7.2e-47 190.7 117 76.9
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 7.2e-47 190.7 123 74.8
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 9.4e-47 190.3 123 73.2
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 9.4e-47 190.3 122 73.8
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 9.4e-47 190.3 122 73.8
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 9.4e-47 190.3 117 76.9
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 9.4e-47 190.3 122 74.6
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 1.2e-46 189.9 124 72.6
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 1.2e-46 189.9 124 72.6
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 1.2e-46 189.9 124 72.6
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 1.2e-46 189.9 124 71.8
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 1.2e-46 189.9 122 74.6
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 1.2e-46 189.9 122 74.6
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.2e-46 189.9 122 73.8
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.2e-46 189.9 122 73.8
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 1.2e-46 189.9 122 73.8
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 1.6e-46 189.5 119 76.5
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.6e-46 189.5 123 74.0
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 1.6e-46 189.5 122 74.6
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 2.1e-46 189.1 119 74.8
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 2.1e-46 189.1 123 74.0
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 2.1e-46 189.1 122 73.8
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 2.1e-46 189.1 123 72.4
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 2.7e-46 188.7 125 72.8
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 2.7e-46 188.7 123 74.8
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 2.7e-46 188.7 122 73.0
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 3.6e-46 188.3 122 73.8
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 3.6e-46 188.3 122 74.6
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 3.6e-46 188.3 119 73.9
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 6.1e-46 187.6 123 72.4
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 8.0e-46 187.2 123 74.8
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 8.0e-46 187.2 119 73.1
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 1.4e-45 186.4 127 70.9
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 4.0e-45 184.9 131 68.7
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 4.0e-45 184.9 111 78.4
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 5.2e-45 184.5 123 73.2
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 5.2e-45 184.5 107 81.3
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 1.5e-44 183.0 111 76.6
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 1.5e-44 183.0 111 77.5
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.3e-44 181.8 123 73.2
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 4.4e-44 181.4 128 71.9
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 9.7e-44 180.3 137 65.0
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 1.3e-43 179.9 106 80.2
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.2e-43 179.1 107 77.6
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 2.8e-43 178.7 137 64.2
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 1.1e-42 176.8 111 75.7
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 3.1e-42 175.3 100 83.0
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 7.0e-42 174.1 106 78.3
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.2e-41 173.3 105 77.1
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.6e-41 172.9 112 69.6
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.5e-41 171.8 108 75.0
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.5e-41 171.8 108 75.0
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 1.3e-40 169.9 118 69.5
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.8e-40 168.3 113 73.5
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 6.5e-40 167.5 151 58.9
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 3.2e-39 165.2 113 71.7
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 5.5e-39 164.5 123 68.3
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.7e-38 162.2 105 71.4
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 4.0e-37 158.3 121 62.8
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 5.7e-36 154.5 100 69.0
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 7.5e-36 154.1 116 62.1
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.1e-34 150.2 105 69.5
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.1e-34 148.3 111 67.6
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.1e-34 148.3 111 67.6
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.0e-29 133.7 99 65.7
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 1.4e-29 133.3 85 72.9
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 8.8e-29 130.6 122 57.4
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 2.0e-28 129.4 79 75.9
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 2.0e-28 129.4 80 73.8
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 5.7e-28 127.9 123 57.7
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 7.5e-28 127.5 78 79.5
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 5.4e-26 121.3 117 50.4
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 9.2e-26 120.6 78 70.5
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 3.8e-24 115.2 76 80.3
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 3.8e-24 115.2 75 72.0
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 3.0e-21 105.5 115 48.7
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.5e-20 103.2 63 74.6
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 8.3e-19 97.4 60 75.0
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.0e-17 92.8 64 71.9
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.9e-16 88.6 58 69.0
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 2.8e-14 82.4 58 70.7
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 3.6e-14 82.0 48 75.0
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 3.6e-14 82.0 48 75.0
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 3.6e-14 82.0 51 70.6
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 9.2e-10 67.4 47 66.0
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.8e-09 64.3 35 77.1
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 8.6e-08 60.8 35 74.3


User provided reference genes

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