Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.4e-262 909.1 456 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.1e-141 506.5 411 62.0
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 5.7e-139 498.4 420 57.4
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 2.2e-138 496.5 417 58.0
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 2.2e-138 496.5 413 59.6
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 2.8e-138 496.1 420 57.1
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 7.7e-136 488.0 416 56.0
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 2.2e-135 486.5 421 55.8
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 2.9e-135 486.1 427 56.0
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 5.0e-135 485.3 437 55.6
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 6.5e-135 485.0 412 56.3
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 8.5e-135 484.6 428 55.6
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 1.1e-134 484.2 421 56.8
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 1.5e-134 483.8 418 56.0
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.9e-134 483.4 418 56.0
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.5e-134 483.0 417 55.4
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 3.2e-134 482.6 424 55.7
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 4.2e-134 482.3 434 54.8
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 7.2e-134 481.5 414 56.3
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.6e-133 480.3 409 57.0
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 2.1e-133 479.9 410 56.1
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 2.7e-133 479.6 407 57.2
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 3.6e-133 479.2 423 56.3
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.1e-133 478.4 407 57.0
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 6.1e-133 478.4 417 56.4
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 8.0e-133 478.0 418 55.7
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 8.0e-133 478.0 412 56.1
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 8.0e-133 478.0 412 56.1
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 8.0e-133 478.0 405 55.8
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 4.0e-132 475.7 418 56.2
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 4.0e-132 475.7 421 55.6
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 4.0e-132 475.7 422 55.5
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 8.8e-132 474.6 411 56.9
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.5e-131 473.8 419 54.4
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.0e-131 473.4 429 54.1
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 2.0e-131 473.4 417 55.6
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 2.6e-131 473.0 428 54.4
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.7e-131 471.9 420 55.0
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 5.7e-131 471.9 418 54.1
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 5.7e-131 471.9 421 55.6
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 7.5e-131 471.5 418 54.3
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.3e-130 470.7 402 57.5
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.7e-130 470.3 416 55.3
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.7e-130 470.3 418 54.1
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 2.2e-130 469.9 396 56.8
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.2e-130 469.9 418 54.5
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 2.8e-130 469.5 421 56.1
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 2.8e-130 469.5 413 56.4
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 3.7e-130 469.2 416 55.8
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 4.8e-130 468.8 418 54.3
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 4.8e-130 468.8 410 55.6
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.8e-130 468.8 418 54.5
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.1e-129 467.6 416 54.6
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.4e-129 467.2 410 55.4
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.4e-129 467.2 415 55.7
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.8e-129 466.8 408 54.2
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.8e-129 466.8 426 54.9
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.4e-129 466.5 408 53.9
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.1e-129 465.7 408 53.9
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.2e-128 464.2 432 53.9
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.2e-128 464.2 418 54.8
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.0e-128 463.4 429 53.4
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 4.5e-128 462.2 402 55.5
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 5.9e-128 461.8 407 56.3
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 5.9e-128 461.8 393 57.0
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.0e-127 461.1 418 53.8
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 1.3e-127 460.7 391 57.0
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 2.3e-127 459.9 431 52.2
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 2.9e-127 459.5 428 53.3
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 2.9e-127 459.5 448 51.8
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 8.6e-127 458.0 460 51.3
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.5e-126 457.2 408 55.1
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.9e-126 456.8 440 52.3
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 3.3e-126 456.1 424 53.8
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 9.5e-126 454.5 459 49.9
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 1.2e-125 454.1 408 54.2
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 1.8e-124 450.3 415 52.5
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 6.8e-124 448.4 483 47.8
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 3.4e-123 446.0 428 53.0
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.2e-120 437.6 447 49.2
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 1.6e-120 437.2 397 55.2
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.1e-117 425.2 417 50.8
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 1.4e-116 424.1 385 54.8
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 2.3e-116 423.3 377 57.6
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 4.0e-116 422.5 414 50.7
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.5e-115 420.6 394 53.3
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.0e-115 420.2 360 55.6
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 2.9e-114 416.4 433 49.7
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 3.2e-113 412.9 437 50.8
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.1e-113 412.5 408 50.2
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 4.1e-113 412.5 390 53.1
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 4.1e-113 412.5 583 41.2
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 9.2e-113 411.4 417 50.6
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 7.8e-112 408.3 402 52.0
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 4.3e-110 402.5 410 50.5
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 5.2e-108 395.6 393 52.4
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 9.8e-107 391.3 426 47.9
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.9e-105 387.1 428 49.3
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 5.0e-103 379.0 328 55.5
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 2.5e-102 376.7 353 51.6
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 7.5e-99 365.2 339 56.3
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.2e-98 363.6 405 47.4
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.1e-96 357.1 328 54.0
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 7.8e-96 355.1 327 53.2
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 3.0e-95 353.2 431 44.3
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.9e-95 352.8 336 53.6
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 5.1e-95 352.4 366 50.0
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.4e-89 333.6 312 52.6
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 7.1e-89 332.0 334 50.0
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.8e-85 320.1 318 52.5
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.6e-80 304.3 402 41.0
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.2e-74 283.9 270 53.7
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 5.4e-73 279.3 266 52.3
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 5.4e-73 279.3 262 53.1
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 7.4e-70 268.9 467 37.9
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.1e-65 255.0 408 38.0
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 4.6e-64 249.6 269 50.6
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.8e-63 247.7 376 38.8
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 2.3e-63 247.3 382 39.0
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 9.6e-62 241.9 400 34.8
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.1e-61 240.7 407 34.4
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.8e-61 240.4 206 55.8
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.4e-60 237.3 402 36.3
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 2.6e-59 233.8 415 38.1
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 5.8e-59 232.6 343 39.1
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 5.8e-59 232.6 171 60.2
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 4.6e-56 223.0 419 35.8
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.0e-55 221.9 213 52.6
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.8e-52 211.1 215 51.2
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 3.2e-49 200.3 146 61.0
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 4.2e-49 199.9 148 60.8
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 5.5e-49 199.5 210 49.0
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 6.7e-47 192.6 142 61.3
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 4.1e-44 183.3 150 57.3
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.6e-43 180.6 346 32.4
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 5.0e-42 176.4 131 62.6
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.9e-41 174.5 133 59.4
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.4e-39 168.3 130 62.3
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 4.5e-35 153.3 190 45.3
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 3.8e-34 150.2 237 40.1
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 8.5e-34 149.1 408 30.1
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 3.9e-31 140.2 111 60.4
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 1.1e-28 132.1 144 48.6
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 8.8e-23 112.5 122 52.5
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.3e-22 110.5 104 48.1
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.4e-22 110.2 85 57.6
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.7e-19 100.9 85 50.6
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 8.8e-15 85.9 59 62.7
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 1.3e-10 72.0 320 21.9
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 2.3e-07 61.2 64 51.6
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 5.2e-07 60.1 58 44.8
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 6.8e-07 59.7 58 44.8
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 8.9e-07 59.3 58 44.8
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 4.4e-06 57.0 48 52.1


User provided reference genes

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