Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0078s0052 Marchantia polymorpha HOM05D029457 ORTHO05D048774 1.6e-149 532.7 270 100.0
Mapoly0154s0011 Marchantia polymorpha HOM05D029457 ORTHO05D048774 1.2e-56 224.2 142 78.9
Mapoly0078s0058 Marchantia polymorpha HOM05D014630 ORTHO05D000099 2.9e-13 80.1 128 36.7
Mapoly0006s0217 Marchantia polymorpha HOM05D014630 ORTHO05D000099 8.4e-13 78.6 127 37.0
Mapoly0059s0077 Marchantia polymorpha HOM05D029457 ORTHO05D000099 5.4e-12 75.9 120 38.3
SEGI_17706 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 7.1e-12 75.5 126 41.3
SalBow2G1345 Salvia bowleyana HOM05D000180 ORTHO05D000099 4.6e-11 72.8 132 37.1
Mapoly0006s0216 Marchantia polymorpha HOM05D029457 ORTHO05D000099 6.0e-11 72.4 145 37.9
SalBow6G0798 Salvia bowleyana HOM05D000180 ORTHO05D000099 6.0e-11 72.4 133 36.1
SalBow1G0434 Salvia bowleyana HOM05D000180 ORTHO05D000099 2.3e-10 70.5 133 35.3
Oeu006670.1 Olea europaea HOM05D000180 ORTHO05D000099 2.5e-09 67.0 117 35.9
SEGI_40814 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 3.3e-09 66.6 113 38.1
FAN21G0286 Fragaria x ananassa HOM05D000180 ORTHO05D000099 9.6e-09 65.1 112 35.7
Oeu004535.1 Olea europaea HOM05D000180 ORTHO05D000099 1.6e-08 64.3 132 31.1
SalBow1G4753 Salvia bowleyana HOM05D000180 ORTHO05D000099 1.6e-08 64.3 112 34.8
SGA_v2.0_scaffold58G20416 Striga asiatica HOM05D000180 ORTHO05D000099 1.6e-08 64.3 159 31.4
Haze_22988 Corylus avellana HOM05D000180 ORTHO05D000099 2.1e-08 63.9 128 32.0
HanXRQChr13g0404161 Helianthus annuus HOM05D000180 ORTHO05D000099 2.1e-08 63.9 135 34.8
SEGI_27055 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 2.1e-08 63.9 117 36.8
GSVIVG01025393001 Vitis vinifera HOM05D000180 ORTHO05D000099 2.1e-08 63.9 119 33.6
SEGI_02512 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 2.8e-08 63.5 114 36.8
GSVIVG01025391001 Vitis vinifera HOM05D000180 ORTHO05D000099 2.8e-08 63.5 138 31.2
Zm00001eb091370 Zea mays HOM05D000180 ORTHO05D000099 2.8e-08 63.5 134 34.3
FvH4_3g44751 Fragaria vesca HOM05D000180 ORTHO05D000099 4.7e-08 62.8 111 35.1
FvH4_3g44750 Fragaria vesca HOM05D000180 ORTHO05D000099 6.2e-08 62.4 112 37.5
SEGI_30918 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 6.2e-08 62.4 107 37.4
RcHm_v2.0_Chr5g0081441 Rosa chinensis HOM05D000180 ORTHO05D000099 8.1e-08 62.0 112 35.7
RcHm_v2.0_Chr5g0081451 Rosa chinensis HOM05D000180 ORTHO05D000099 8.1e-08 62.0 112 34.8
SMO147G0293 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 8.1e-08 62.0 124 33.9
SMO331G0078 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 8.1e-08 62.0 128 35.2
unitig_899.g15078 Utricularia gibba HOM05D000180 ORTHO05D000099 1.1e-07 61.6 185 29.2
GSVIVG01025394001 Vitis vinifera HOM05D000180 ORTHO05D000099 1.1e-07 61.6 138 31.2
Migut.O00816 Erythranthe guttata HOM05D000180 ORTHO05D000099 1.4e-07 61.2 132 32.6
PGR004G0710 Punica granatum HOM05D000180 ORTHO05D000099 1.4e-07 61.2 144 35.4
SMO367G1050 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 1.4e-07 61.2 127 36.2
MSTRG.806 Avicennia marina HOM05D000180 ORTHO05D000099 1.8e-07 60.8 132 30.3
DCAR_024344 Daucus carota HOM05D000180 ORTHO05D000099 1.8e-07 60.8 111 35.1
Nn7g35941 Nelumbo nucifera HOM05D000180 ORTHO05D000099 1.8e-07 60.8 133 32.3
SalBow1G2007 Salvia bowleyana HOM05D000180 ORTHO05D000099 1.8e-07 60.8 112 33.9
SalBow6G6800 Salvia bowleyana HOM05D000180 ORTHO05D000099 1.8e-07 60.8 116 37.1
SEGI_04022 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 1.8e-07 60.8 105 36.2
BolC6t36091H Brassica oleracea HOM05D000180 ORTHO05D000099 2.4e-07 60.5 116 31.0
Lj3P831T27 Lonicera japonica HOM05D000180 ORTHO05D000099 2.4e-07 60.5 129 32.6
PGSC0003DMG400041872 Solanum tuberosum HOM05D000180 ORTHO05D000099 2.4e-07 60.5 122 33.6
TAR633G2755 Trochodendron aralioides HOM05D000180 ORTHO05D000099 2.4e-07 60.5 131 31.3
Migut.B00107 Erythranthe guttata HOM05D000180 ORTHO05D000099 3.1e-07 60.1 135 34.8
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 3.1e-07 60.1 132 32.6
FAN14G0740 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.1e-07 60.1 132 32.6
TWI60G1273 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 3.1e-07 60.1 110 37.3
ATR0810G102 Amborella trichopoda HOM05D000180 ORTHO05D000099 4.0e-07 59.7 148 32.4
A06p00320 Brassica napus HOM05D000180 ORTHO05D000099 4.0e-07 59.7 116 31.0
Rhsim06G0164000 Rhododendron simsii HOM05D000180 ORTHO05D000099 4.0e-07 59.7 118 33.1
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 4.0e-07 59.7 132 34.1
Sopen01g026020 Solanum pennellii HOM05D000180 ORTHO05D000099 4.0e-07 59.7 122 32.8
Medtr4g122130 Medicago truncatula HOM05D000180 ORTHO05D000099 5.2e-07 59.3 129 27.9
SalBow6G2900 Salvia bowleyana HOM05D000180 ORTHO05D000099 5.2e-07 59.3 133 31.6
SalBow6G4380 Salvia bowleyana HOM05D000180 ORTHO05D000099 5.2e-07 59.3 134 35.1
SalBow6G5103 Salvia bowleyana HOM05D000180 ORTHO05D000099 5.2e-07 59.3 117 38.5
SEGI_35627 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 5.2e-07 59.3 128 32.8
VMungo1215G2518 Vigna mungo HOM05D000180 ORTHO05D000099 5.2e-07 59.3 156 26.9
Aa31LG7G6890 Aethionema arabicum HOM05D000180 ORTHO05D000099 6.8e-07 58.9 155 31.0
Pp3c15_14930 Physcomitrium patens HOM05D021719 ORTHO05D000099 6.8e-07 58.9 125 32.0
Solyc01g059900.4 Solanum lycopersicum HOM05D000180 ORTHO05D000099 6.8e-07 58.9 122 32.8
TAR629G1977 Trochodendron aralioides HOM05D000180 ORTHO05D000099 6.8e-07 58.9 136 31.6
CANSAT64G1957 Cannabis sativa HOM05D000180 ORTHO05D000099 8.9e-07 58.5 146 32.2
Cc03_g00830 Coffea canephora HOM05D000180 ORTHO05D000099 8.9e-07 58.5 129 31.0
THA.LOC104820599 Tarenaya hassleriana HOM05D000180 ORTHO05D000099 8.9e-07 58.5 161 28.6
TAR629G0736 Trochodendron aralioides HOM05D000180 ORTHO05D000099 8.9e-07 58.5 136 31.6
ATR0081G021 Amborella trichopoda HOM05D000180 ORTHO05D000099 1.2e-06 58.2 135 31.1
MSTRG.5021 Avicennia marina HOM05D000180 ORTHO05D000099 1.2e-06 58.2 116 29.3
Thhalv10006492m.g Eutrema salsugineum HOM05D000180 ORTHO05D000099 1.2e-06 58.2 133 32.3
Nitab4.5_0002313g0080 Nicotiana tabacum HOM05D000180 ORTHO05D000099 1.2e-06 58.2 145 30.3
SalBow5G2933 Salvia bowleyana HOM05D000180 ORTHO05D000099 1.2e-06 58.2 111 39.6
SalBow6G5297 Salvia bowleyana HOM05D000180 ORTHO05D000099 1.2e-06 58.2 106 38.7
SMO304G0105 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 1.2e-06 58.2 116 35.3
SGA_v2.0_scaffold302G47819 Striga asiatica HOM05D000180 ORTHO05D000099 1.2e-06 58.2 131 32.1
SGA_v2.0_scaffold58G20418 Striga asiatica HOM05D000180 ORTHO05D000099 1.2e-06 58.2 131 32.1
TWI60G0860 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 1.2e-06 58.2 114 35.1
TWI60G1496 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 1.2e-06 58.2 114 35.1
TWI60G1726 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 1.2e-06 58.2 110 35.5
MSTRG.8865 Avicennia marina HOM05D000180 ORTHO05D000099 1.5e-06 57.8 101 35.6
Cfa009619 Carpinus fangiana HOM05D000180 ORTHO05D000099 1.5e-06 57.8 133 30.8
MELO3C022433.2 Cucumis melo HOM05D000180 ORTHO05D000099 1.5e-06 57.8 110 34.5
FAN05G0464 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.5e-06 57.8 125 36.0
Manes.15G004300 Manihot esculenta HOM05D000180 ORTHO05D000099 1.5e-06 57.8 132 28.0
Mapoly0072s0041 Marchantia polymorpha HOM05D010830 ORTHO05D013093 1.5e-06 57.8 146 27.4
Nn7g35943 Nelumbo nucifera HOM05D000180 ORTHO05D000099 1.5e-06 57.8 147 32.7
SEGI_16875 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 1.5e-06 57.8 117 34.2
SEGI_28710 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 1.5e-06 57.8 146 31.5
COL.COLO4_30582 Corchorus olitorius HOM05D000180 ORTHO05D000099 2.0e-06 57.4 162 27.2
Migut.B00109 Erythranthe guttata HOM05D000180 ORTHO05D000099 2.0e-06 57.4 118 28.0
Eucgr.A01114 Eucalyptus grandis HOM05D000180 ORTHO05D000099 2.0e-06 57.4 131 34.4
FvH4_6g42930 Fragaria vesca HOM05D000180 ORTHO05D000099 2.0e-06 57.4 125 36.8
FAN14G4538 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.0e-06 57.4 125 36.8
Lsat_1_v5_gn_9_29500 Lactuca sativa HOM05D000180 ORTHO05D000099 2.0e-06 57.4 146 33.6
Lsat_1_v5_gn_9_29520 Lactuca sativa HOM05D000180 ORTHO05D000099 2.0e-06 57.4 146 33.6
MBI17_g06058_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 2.0e-06 57.4 130 32.3
SalBow8G1253 Salvia bowleyana HOM05D000180 ORTHO05D000099 2.0e-06 57.4 111 38.7
GSVIVG01030446001 Vitis vinifera HOM05D000180 ORTHO05D000099 2.0e-06 57.4 117 35.0
Ah.12g065140 Amaranthus hybridus HOM05D000180 ORTHO05D000099 2.6e-06 57.0 139 27.3
HanXRQChr10g0305461 Helianthus annuus HOM05D000180 ORTHO05D000099 2.6e-06 57.0 148 31.8
PGR142G2425 Punica granatum HOM05D000180 ORTHO05D000099 2.6e-06 57.0 154 29.9
QL08p032297 Quercus lobata HOM05D000180 ORTHO05D000099 2.6e-06 57.0 111 38.7
Aa31LG7G6900 Aethionema arabicum HOM05D000180 ORTHO05D000099 3.4e-06 56.6 152 30.3
Ciclev10007072m.g Citrus clementina HOM05D000180 ORTHO05D000099 3.4e-06 56.6 137 31.4
CsaV3_6G006930 Cucumis sativus L. HOM05D000180 ORTHO05D000099 3.4e-06 56.6 105 34.3
ECA248G3820 Erigeron canadensis HOM05D000180 ORTHO05D000099 3.4e-06 56.6 169 32.5
MD14G1052400 Malus domestica HOM05D000180 ORTHO05D000099 3.4e-06 56.6 123 32.5
Nitab4.5_0003476g0040 Nicotiana tabacum HOM05D000180 ORTHO05D000099 3.4e-06 56.6 122 32.8
Sabra03G0161400 Salix brachista HOM05D000180 ORTHO05D000099 3.4e-06 56.6 133 29.3
SMO364G0560 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 3.4e-06 56.6 123 35.0
CSS0002646 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 4.4e-06 56.2 107 38.3
Duzib093G0294 Durio zibethinus HOM05D000180 ORTHO05D000099 4.4e-06 56.2 169 30.2
Migut.N01311 Erythranthe guttata HOM05D000180 ORTHO05D000099 4.4e-06 56.2 102 31.4
Glyma.01G126700 Glycine max HOM05D000180 ORTHO05D000099 4.4e-06 56.2 134 32.1
Medtr4g013310 Medicago truncatula HOM05D000180 ORTHO05D000099 4.4e-06 56.2 161 30.4
Potri.003G216300 Populus trichocarpa HOM05D000180 ORTHO05D000099 4.4e-06 56.2 133 30.1
SEGI_09751 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 4.4e-06 56.2 112 34.8
SGA_v2.0_scaffold207G41896 Striga asiatica HOM05D000180 ORTHO05D000099 4.4e-06 56.2 134 31.3
SGA_v2.0_scaffold274G46496 Striga asiatica HOM05D000180 ORTHO05D000099 4.4e-06 56.2 147 28.6
arahy.Tifrunner.gnm1.ann1.6P69YR Arachis hypogaea HOM05D000180 ORTHO05D000099 5.8e-06 55.8 108 40.7
Eucgr.A01115 Eucalyptus grandis HOM05D000180 ORTHO05D000099 5.8e-06 55.8 133 34.6
Glyma.01G127100 Glycine max HOM05D000180 ORTHO05D000099 5.8e-06 55.8 142 31.7
Glyma.17G033500 Glycine max HOM05D000180 ORTHO05D000099 5.8e-06 55.8 134 31.3
HanXRQChr02g0056611 Helianthus annuus HOM05D000180 ORTHO05D000099 5.8e-06 55.8 133 31.6
Mapoly0117s0015 Marchantia polymorpha HOM05D014630 ORTHO05D019289 5.8e-06 55.8 116 31.9
Mapoly0117s0017 Marchantia polymorpha HOM05D014630 ORTHO05D019289 5.8e-06 55.8 119 29.4
Nn2g15760 Nelumbo nucifera HOM05D000180 ORTHO05D000099 5.8e-06 55.8 123 32.5
Nn7g35945 Nelumbo nucifera HOM05D000180 ORTHO05D000099 5.8e-06 55.8 113 31.9
Potri.003G216400 Populus trichocarpa HOM05D000180 ORTHO05D000099 5.8e-06 55.8 133 30.1
Prupe.7G083100 Prunus persica HOM05D000180 ORTHO05D000099 5.8e-06 55.8 127 30.7
SEGI_17478 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 5.8e-06 55.8 121 31.4
TPR.G4666 Trifolium pratense HOM05D000180 ORTHO05D000099 5.8e-06 55.8 129 32.6
TAR629G2919 Trochodendron aralioides HOM05D000180 ORTHO05D000099 5.8e-06 55.8 127 29.9
Aa31LG10G12810 Aethionema arabicum HOM05D000180 ORTHO05D000099 7.6e-06 55.5 133 33.8
ATR0003G002 Amborella trichopoda HOM05D000180 ORTHO05D000099 7.6e-06 55.5 146 28.8
ATR0081G048 Amborella trichopoda HOM05D000180 ORTHO05D000099 7.6e-06 55.5 145 29.7
CANSAT64G1873 Cannabis sativa HOM05D000180 ORTHO05D000099 7.6e-06 55.5 146 32.2
CiPaw.14G133500 Carya illinoinensis HOM05D000180 ORTHO05D000099 7.6e-06 55.5 115 36.5
CDE04G3657 Ceratophyllum demersum HOM05D000180 ORTHO05D000099 7.6e-06 55.5 144 34.0
Eucgr.A01112 Eucalyptus grandis HOM05D000180 ORTHO05D000099 7.6e-06 55.5 112 34.8
HanXRQChr01g0024981 Helianthus annuus HOM05D000180 ORTHO05D000099 7.6e-06 55.5 129 32.6
Lsat_1_v5_gn_1_67800 Lactuca sativa HOM05D000180 ORTHO05D000099 7.6e-06 55.5 112 33.9
Mapoly0117s0014 Marchantia polymorpha HOM05D014630 ORTHO05D019289 7.6e-06 55.5 124 29.8
Mapoly0117s0016 Marchantia polymorpha HOM05D014630 ORTHO05D019289 7.6e-06 55.5 105 31.4
Oeu006671.1 Olea europaea HOM05D000180 ORTHO05D000099 7.6e-06 55.5 146 28.8
Os11g0179400 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 7.6e-06 55.5 114 36.0
QL03p039396 Quercus lobata HOM05D000180 ORTHO05D000099 7.6e-06 55.5 143 29.4
QL03p039521 Quercus lobata HOM05D000180 ORTHO05D000099 7.6e-06 55.5 165 29.1
QL07p024822 Quercus lobata HOM05D000180 ORTHO05D000099 7.6e-06 55.5 173 28.3
Rhsim11G0189900 Rhododendron simsii HOM05D000180 ORTHO05D000099 7.6e-06 55.5 146 32.2
SEGI_32439 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 7.6e-06 55.5 124 32.3
SGA_v2.0_scaffold6G03276 Striga asiatica HOM05D000180 ORTHO05D000099 7.6e-06 55.5 134 32.1
SGA_v2.0_scaffold6G03278 Striga asiatica HOM05D000180 ORTHO05D000099 7.6e-06 55.5 134 29.9
Thecc.05G176700 Theobroma cacao HOM05D000180 ORTHO05D000099 7.6e-06 55.5 144 30.6
unitig_26.g9998 Utricularia gibba HOM05D000180 ORTHO05D000099 7.6e-06 55.5 136 30.1
GSVIVG01030448001 Vitis vinifera HOM05D000180 ORTHO05D000099 7.6e-06 55.5 130 31.5
ATR0810G295 Amborella trichopoda HOM05D000180 ORTHO05D000099 9.9e-06 55.1 129 32.6
AT5G42510 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 9.9e-06 55.1 111 33.3
arahy.Tifrunner.gnm1.ann1.FTV255 Arachis hypogaea HOM05D000180 ORTHO05D000099 9.9e-06 55.1 143 32.9
BcaC07g40181 Brassica carinata HOM05D000180 ORTHO05D000099 9.9e-06 55.1 134 29.1
BcaC07g40183 Brassica carinata HOM05D000180 ORTHO05D000099 9.9e-06 55.1 134 29.1
Ca_19514_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 9.9e-06 55.1 114 31.6
DCAR_031097 Daucus carota HOM05D000180 ORTHO05D000099 9.9e-06 55.1 128 30.5
Migut.N01592 Erythranthe guttata HOM05D000180 ORTHO05D000099 9.9e-06 55.1 133 29.3
HanXRQChr01g0021591 Helianthus annuus HOM05D000180 ORTHO05D000099 9.9e-06 55.1 170 28.8
Lj3g0001821 Lotus japonicus HOM05D000180 ORTHO05D000099 9.9e-06 55.1 113 35.4
Oeu055652.1 Olea europaea HOM05D000180 ORTHO05D000099 9.9e-06 55.1 123 31.7
SMO347G0300 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 9.9e-06 55.1 122 32.8
VMungo0331G1367 Vigna mungo HOM05D000180 ORTHO05D000099 9.9e-06 55.1 179 30.7


User provided reference genes

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