Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 2453.3 1242 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1805.4 1264 70.6
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1724.9 1325 65.5
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1687.9 1286 65.3
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1583.5 1260 61.7
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 1570.8 1273 61.1
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 1553.5 1289 60.1
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 1540.8 1291 60.2
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 1539.6 1291 60.2
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 1536.5 1291 60.0
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 1534.2 1293 59.6
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 1533.1 1291 60.0
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 1532.3 1292 59.4
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 1530.0 1291 59.8
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 1529.2 1293 59.6
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 1526.9 1293 59.3
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 1525.4 1292 59.4
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 1523.8 1296 59.1
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1522.7 1289 58.8
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 1522.3 1306 58.7
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1520.8 1301 58.6
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 1519.2 1292 59.4
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 1516.9 1290 59.4
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 1516.5 1291 59.6
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1514.6 1301 58.3
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 1512.3 1290 58.3
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 1511.1 1294 59.0
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 1510.7 1244 61.3
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 1510.7 1289 59.0
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 1510.0 1301 58.5
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 1508.4 1288 59.0
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1506.1 1288 59.0
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 1505.3 1288 58.5
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1503.4 1291 58.9
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1503.4 1290 58.7
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 1502.6 1290 59.0
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 1502.3 1290 59.1
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1502.3 1289 58.8
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 1500.3 1290 59.1
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 1500.3 1303 58.3
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 1499.6 1290 59.1
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 1498.8 1291 59.0
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1498.8 1290 58.5
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 1498.0 1294 58.8
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 1496.1 1288 59.1
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 1495.7 1295 58.3
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1494.9 1301 58.1
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 1494.6 1284 58.6
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 1492.2 1299 58.4
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1490.3 1291 58.0
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1488.4 1293 58.5
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1487.6 1296 57.9
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1486.1 1293 58.5
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1485.7 1294 57.8
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 1484.9 1302 58.1
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1484.5 1268 59.0
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 1484.2 1298 58.6
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 1483.0 1294 58.3
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 1483.0 1292 58.2
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 1481.8 1300 58.2
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1480.7 1288 57.8
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 1478.0 1295 58.2
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 1477.2 1293 58.4
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 1477.2 1291 57.9
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 1476.5 1291 57.8
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1471.1 1287 57.4
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1470.3 1294 57.6
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 1469.5 1282 57.9
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1466.8 1326 56.9
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1457.2 1297 57.7
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1455.3 1298 57.5
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 1431.4 1313 56.4
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 1425.2 1301 56.3
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1423.3 1380 54.1
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1416.4 1294 56.6
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 1414.4 1314 56.1
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1411.0 1290 56.2
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1406.7 1215 58.5
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1398.6 1263 57.8
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1383.2 1224 57.8
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1341.3 1534 48.2
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1331.6 1184 56.4
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1270.8 1270 53.1
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1208.7 1211 52.2
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1168.7 951 61.7
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1162.1 952 61.8
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1130.2 1070 55.6
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1089.3 919 58.8
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1087.4 1143 50.0
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 1.3e-310 1070.1 934 57.5
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 9.0e-304 1047.3 914 57.1
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 4.5e-303 1045.0 921 56.4
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 3.8e-302 1042.0 916 56.8
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 3.3e-298 1028.9 916 56.8
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 9.6e-298 1027.3 915 56.2
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 2.2e-281 973.0 849 56.5
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 1.1e-274 950.7 918 52.7
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 2.6e-266 922.9 949 49.8
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 5.2e-219 765.8 688 57.7
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.3e-169 601.7 834 42.4
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 3.8e-169 600.1 738 45.5
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 3.3e-157 560.5 471 61.8
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 1.8e-150 538.1 434 62.0
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 3.8e-145 520.4 499 55.5
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 1.5e-144 518.5 634 44.5
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.5e-144 517.7 459 59.9
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 2.2e-140 504.6 540 51.5
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 3.7e-140 503.8 333 74.2
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 6.5e-137 493.0 333 72.4
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 3.6e-135 487.3 333 73.0
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 8.0e-135 486.1 333 71.2
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 5.7e-133 479.9 333 70.3
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 6.1e-127 459.9 370 60.3
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 8.9e-126 456.1 333 69.1
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 1.1e-120 439.1 333 66.7
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.4e-118 432.2 443 47.9
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 3.1e-110 404.4 260 76.2
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 5.2e-110 403.7 408 54.2
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 1.6e-98 365.5 239 75.3
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 2.5e-88 331.6 260 65.0
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.1e-87 328.6 333 52.6
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 1.1e-86 326.2 465 38.1
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.8e-86 325.5 264 59.1
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 3.1e-86 324.7 338 48.5
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 4.4e-85 320.9 282 58.5
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 1.7e-84 318.9 262 63.0
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.2e-83 314.7 259 62.5
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 1.2e-82 312.8 305 52.1
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 4.5e-77 294.3 243 57.2
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 6.0e-66 257.3 417 36.2
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.1e-56 226.5 154 70.1
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 5.7e-48 197.6 134 70.1
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 1.2e-45 189.9 158 58.9
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.0e-44 186.8 166 51.2
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 4.7e-42 177.9 144 60.4
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 1.8e-41 176.0 130 66.2
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 2.6e-37 162.2 123 67.5
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 2.9e-36 158.7 119 63.9
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.0e-33 148.7 95 72.6
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.6e-32 145.6 123 56.9
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 4.8e-31 141.4 127 52.0
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 6.3e-31 141.0 123 60.2
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.2e-29 136.7 128 58.6
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.2e-29 136.7 113 58.4
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 1.0e-28 133.7 136 50.7
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.7e-26 125.6 139 50.4
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 4.4e-24 118.2 73 76.7
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 4.4e-24 118.2 152 42.8
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 9.4e-19 100.5 100 45.0
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 6.1e-18 97.8 100 44.0
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 8.0e-18 97.4 57 78.9
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 2.6e-16 92.4 103 45.6
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 4.2e-11 75.1 102 40.2
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.1e-10 72.8 58 58.6
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 6.1e-10 71.2 58 56.9
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 9.8e-08 63.9 57 50.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 6.3e-07 61.2 32 84.4


User provided reference genes

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