Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 2250.3 1153 100.0
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1600.1 1162 69.4
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1595.5 1162 69.7
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1570.8 1154 68.5
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1567.4 1178 67.8
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1555.8 1149 68.5
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1503.4 1166 66.0
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1499.6 1170 66.2
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1492.6 1098 67.8
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1479.2 1159 65.7
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1478.0 1160 65.8
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1476.5 1161 65.5
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1475.3 1160 65.9
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1474.9 1162 64.7
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1474.5 1156 66.1
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1473.8 1161 65.3
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1473.4 1160 65.3
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1469.5 1169 65.0
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1468.0 1171 64.2
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1467.6 1169 65.4
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1467.2 1168 65.7
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1467.2 1160 64.3
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1467.2 1168 64.6
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1462.6 1168 65.1
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1462.2 1207 63.2
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1461.8 1168 64.9
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1461.4 1160 65.1
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1459.1 1167 65.0
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1459.1 1174 64.1
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1458.0 1177 63.9
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1456.4 1160 64.7
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1454.9 1159 65.0
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1453.3 1162 63.3
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1453.0 1157 65.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1452.6 1156 64.7
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1452.2 1160 65.0
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1450.3 1171 64.2
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1448.7 1166 64.9
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1448.7 1163 64.1
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1447.6 1160 64.9
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1447.2 1166 64.1
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1447.2 1155 64.6
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1446.4 1158 64.0
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1444.9 1158 63.6
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1444.9 1155 64.2
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1444.5 1151 63.9
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1444.5 1168 64.0
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1443.7 1168 64.0
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1443.7 1168 63.9
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1443.7 1156 64.0
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1443.3 1157 63.2
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1442.2 1162 64.0
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1442.2 1164 64.0
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1441.4 1158 64.7
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1440.6 1162 64.8
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1439.9 1160 64.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1439.1 1173 63.4
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1438.7 1154 64.4
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1436.8 1154 64.4
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1436.8 1164 63.7
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1436.0 1160 65.7
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1436.0 1160 64.1
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1436.0 1155 64.5
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1435.6 1158 64.3
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1433.3 1173 63.4
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1432.5 1161 64.5
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1432.5 1165 63.9
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1431.8 1163 62.9
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1431.8 1093 66.3
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1431.4 1096 65.1
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1431.0 1164 63.5
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1431.0 1169 63.3
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1428.7 1201 62.5
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1426.4 1163 63.6
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1426.4 1203 62.5
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1426.4 1155 64.4
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1425.6 1164 63.7
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1424.8 1099 65.5
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1424.5 1163 63.6
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1424.1 1165 63.9
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1424.1 1165 63.1
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1418.3 1172 63.3
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1416.7 1163 63.6
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1416.0 1167 63.3
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1415.6 1167 63.5
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1415.6 1167 63.5
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1415.2 1172 63.0
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1414.4 1163 63.5
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1414.1 1169 63.5
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1412.1 1094 65.1
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1412.1 1165 62.9
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1410.2 1168 62.9
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1409.4 1094 64.8
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1384.4 1165 62.4
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1381.3 1163 60.8
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1374.8 1170 61.9
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1370.1 1159 60.1
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1334.7 1189 59.9
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1332.4 1321 55.9
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1327.4 1055 63.8
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1296.2 1152 57.7
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1293.9 1152 57.6
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1230.3 988 64.6
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1201.4 912 65.2
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1198.0 1159 56.5
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 0.0e+00 1183.3 1185 51.6
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1169.8 851 69.0
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1143.3 801 71.0
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1133.2 931 63.8
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1112.8 845 66.6
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1086.2 799 68.0
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 1.3e-269 933.7 773 60.8
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 9.0e-266 921.0 698 67.8
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 5.9e-233 812.0 578 72.1
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 8.0e-222 775.0 550 71.3
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.6e-220 770.0 745 56.5
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.4e-220 769.6 598 66.4
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.0e-217 760.4 648 60.2
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 2.9e-195 686.8 633 56.9
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.2e-186 656.8 584 58.9
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 2.1e-185 654.1 465 67.5
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 8.7e-176 622.1 517 59.2
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 7.9e-137 492.7 464 56.0
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 2.9e-131 474.2 400 57.8
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 2.0e-119 434.9 359 63.0
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 3.6e-97 360.9 379 49.6
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.3e-88 331.6 345 53.9
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 3.2e-69 268.1 195 68.7
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 7.8e-68 263.5 260 51.9
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 5.8e-47 194.1 167 62.9
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 6.0e-36 157.5 139 62.6
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 5.1e-35 154.5 128 64.1
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 1.9e-29 136.0 103 68.9
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 7.9e-28 130.6 87 71.3
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.0e-27 130.2 109 64.2
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 8.2e-25 120.6 96 64.6
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.8e-24 119.4 75 72.0
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 2.4e-16 92.4 120 45.8
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 5.9e-15 87.8 170 34.7
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 7.7e-15 87.4 106 46.2
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.6e-10 72.4 50 66.0
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.3e-10 72.0 50 64.0
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 5.7e-10 71.2 355 26.2
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 9.7e-10 70.5 50 64.0


User provided reference genes

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