Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 0.0e+00 2378.6 1208 100.0
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 0.0e+00 1646.3 1214 70.6
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 0.0e+00 1255.0 1202 55.7
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 0.0e+00 1122.1 1247 50.4
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 6.7e-288 994.6 771 65.1
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 3.2e-274 949.1 1207 43.7
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 2.6e-271 939.5 1218 44.5
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 2.4e-269 932.9 1211 44.5
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 2.5e-266 922.9 1214 43.5
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 3.6e-265 919.1 1200 43.2
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 6.1e-265 918.3 1210 43.7
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 1.4e-264 917.1 1216 44.2
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 2.0e-263 913.3 1205 44.1
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 2.6e-263 912.9 1200 42.9
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 1.3e-262 910.6 1198 43.7
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 2.8e-262 909.4 1200 43.3
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 8.3e-262 907.9 1200 42.7
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 9.2e-261 904.4 1201 43.5
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 1.0e-259 901.0 1200 42.2
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 3.8e-259 899.0 1196 43.6
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 3.8e-259 899.0 1209 42.8
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 8.6e-259 897.9 1228 42.6
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 1.1e-258 897.5 1206 42.3
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 4.3e-258 895.6 1227 42.2
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 9.5e-258 894.4 1211 41.9
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 2.1e-257 893.3 1205 42.5
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 3.6e-257 892.5 1213 42.1
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 6.1e-257 891.7 1207 43.0
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 8.0e-257 891.3 1196 43.1
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 1.8e-256 890.2 1221 42.3
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 6.8e-256 888.3 1208 41.4
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 8.9e-256 887.9 1203 41.7
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 1.2e-255 887.5 1214 42.2
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 2.6e-255 886.3 1201 42.9
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 7.5e-255 884.8 1224 41.8
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 3.7e-254 882.5 1219 42.1
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 8.3e-254 881.3 1206 42.5
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 1.1e-253 880.9 1235 41.5
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.4e-253 880.6 1221 41.9
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 1.8e-253 880.2 1212 42.5
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 4.1e-253 879.0 1211 41.4
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 4.1e-253 879.0 1215 41.6
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 7.0e-253 878.2 1210 41.7
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 1.2e-252 877.5 1206 42.1
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 1.6e-252 877.1 1214 42.2
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 1.6e-252 877.1 1220 41.6
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 3.5e-252 875.9 1206 41.6
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.0e-251 874.4 1206 41.5
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 3.0e-251 872.8 1215 41.4
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 6.6e-251 871.7 1215 42.1
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 2.5e-250 869.8 1204 41.7
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 5.6e-250 868.6 1204 40.8
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 5.6e-250 868.6 1206 41.3
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 3.6e-249 865.9 1204 40.7
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 8.0e-249 864.8 1211 41.8
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 1.0e-248 864.4 1213 41.4
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 1.0e-248 864.4 1207 42.5
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 3.1e-248 862.8 1214 41.0
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 4.0e-248 862.4 1216 41.4
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 1.2e-247 860.9 1204 40.5
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 1.5e-247 860.5 1202 41.1
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 2.6e-247 859.8 1218 41.5
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 9.8e-247 857.8 1221 41.4
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 1.7e-246 857.1 1211 40.6
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 1.7e-246 857.1 1215 40.9
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 4.1e-245 852.4 1257 39.8
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 1.2e-244 850.9 1197 41.9
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 1.6e-244 850.5 1224 41.1
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 2.0e-244 850.1 1220 40.6
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 6.0e-244 848.6 1209 40.4
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 7.8e-244 848.2 1227 41.2
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 1.3e-243 847.4 1224 40.8
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 3.3e-242 842.8 1224 40.4
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 9.5e-242 841.3 1223 40.2
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 1.2e-241 840.9 1222 40.7
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 8.9e-240 834.7 1227 40.3
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 3.4e-239 832.8 1221 40.5
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 4.9e-238 828.9 1203 39.7
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 8.3e-238 828.2 1345 39.0
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 4.1e-237 825.9 1134 43.4
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 2.7e-236 823.2 1226 40.0
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 1.3e-235 820.8 1249 39.2
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 5.1e-235 818.9 1224 39.7
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 6.6e-235 818.5 1214 40.1
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 8.6e-235 818.1 1349 37.7
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 3.3e-234 816.2 1066 43.5
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 3.1e-232 809.7 1209 39.6
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 4.4e-231 805.8 1209 40.4
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 2.3e-227 793.5 1230 39.2
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 4.7e-225 785.8 1094 41.7
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 1.4e-221 774.2 1205 39.3
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 5.4e-221 772.3 1095 41.1
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 6.2e-217 758.8 1220 37.8
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 8.1e-217 758.4 1202 38.4
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 2.1e-209 733.8 1214 38.2
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 2.1e-201 707.2 1058 40.5
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 1.2e-199 701.4 1068 40.8
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 5.1e-195 686.0 1063 39.1
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 1.0e-166 592.0 1072 35.7
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 2.2e-166 590.9 709 45.8
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 1.5e-165 588.2 759 43.7
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 5.9e-159 566.2 711 44.6
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 5.5e-157 559.7 745 42.0
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 5.9e-135 486.5 518 49.2
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 6.8e-131 473.0 704 41.1
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 8.1e-124 449.5 785 36.2
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 9.9e-114 416.0 740 36.5
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 8.1e-100 369.8 857 32.7
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 2.3e-94 351.7 438 46.6
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 1.6e-92 345.5 797 33.1
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 4.3e-77 294.3 463 37.1
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 2.0e-74 285.4 419 39.4
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 2.3e-70 271.9 463 36.9
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 5.1e-62 244.2 1284 23.9
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 3.1e-59 235.0 451 33.9
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 1.4e-46 193.0 284 38.0
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 8.5e-41 173.7 1329 23.0
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 1.8e-35 156.0 355 30.1
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 7.0e-35 154.1 229 38.9
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.6e-34 152.9 366 30.9
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 2.1e-31 142.5 115 59.1
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 1.4e-30 139.8 193 43.0
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 2.3e-30 139.0 118 56.8
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 5.7e-29 134.4 354 31.9
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 1.9e-24 119.4 130 45.4


User provided reference genes

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