Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 5.9e-225 783.9 398 100.0
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 3.4e-148 528.9 409 65.0
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 3.6e-145 518.8 394 64.7
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 4.7e-145 518.5 397 64.0
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 4.7e-145 518.5 418 62.9
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.3e-144 516.2 407 63.4
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 3.0e-144 515.8 393 64.9
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 3.0e-144 515.8 394 65.5
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 3.9e-144 515.4 405 64.4
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 8.8e-144 514.2 406 62.6
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 1.1e-143 513.8 417 62.4
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 1.5e-143 513.5 410 62.7
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 2.6e-143 512.7 417 62.4
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 5.7e-143 511.5 412 62.4
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 7.4e-143 511.1 398 63.6
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 9.7e-143 510.8 396 64.1
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.7e-142 510.0 406 61.8
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 2.2e-142 509.6 406 62.8
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 2.8e-142 509.2 394 64.5
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 2.8e-142 509.2 417 62.4
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.8e-142 508.4 395 64.6
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 4.8e-142 508.4 395 63.0
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 6.3e-142 508.1 417 62.1
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 8.2e-142 507.7 398 62.8
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 1.1e-141 507.3 398 63.3
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.1e-141 507.3 395 64.6
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 2.4e-141 506.1 405 63.7
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 2.4e-141 506.1 406 62.6
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 3.1e-141 505.8 407 62.2
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 5.3e-141 505.0 416 61.8
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 5.3e-141 505.0 404 61.6
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 1.2e-140 503.8 394 64.5
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 1.2e-140 503.8 416 62.5
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 1.2e-140 503.8 407 63.1
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 1.2e-140 503.8 398 64.3
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 1.5e-140 503.4 408 60.5
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 2.0e-140 503.1 406 61.3
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 3.5e-140 502.3 396 63.6
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 4.5e-140 501.9 416 61.3
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 4.5e-140 501.9 411 61.8
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 7.7e-140 501.1 392 64.5
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 1.0e-139 500.7 399 62.7
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 1.3e-139 500.4 405 61.5
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 1.3e-139 500.4 397 62.0
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 1.7e-139 500.0 408 62.5
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 1.7e-139 500.0 394 62.7
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 5.0e-139 498.4 385 66.2
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 1.5e-138 496.9 402 64.2
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 1.9e-138 496.5 404 60.9
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 2.5e-138 496.1 388 64.7
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 5.5e-138 495.0 398 63.1
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 5.5e-138 495.0 407 62.2
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 9.4e-138 494.2 407 62.9
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 1.2e-137 493.8 408 62.7
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 1.2e-137 493.8 408 60.5
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 1.2e-137 493.8 404 61.9
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 2.1e-137 493.0 405 61.5
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 3.6e-137 492.3 397 64.2
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 3.6e-137 492.3 406 62.3
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 6.1e-137 491.5 405 60.7
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 1.8e-136 490.0 434 57.4
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 1.8e-136 490.0 394 61.7
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 3.9e-136 488.8 391 65.0
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 3.9e-136 488.8 408 61.0
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 5.2e-136 488.4 391 62.7
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 5.2e-136 488.4 394 62.9
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 6.7e-136 488.0 409 61.9
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.1e-135 487.3 390 61.8
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.5e-135 486.9 391 61.9
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.0e-135 486.5 391 62.7
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 3.3e-135 485.7 407 61.7
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 7.4e-135 484.6 390 63.8
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 2.2e-134 483.0 391 61.1
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 3.7e-134 482.3 391 62.7
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 4.8e-134 481.9 398 62.8
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 1.4e-133 480.3 424 59.4
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 4.1e-133 478.8 372 64.5
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 1.2e-132 477.2 415 58.6
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 2.0e-132 476.5 406 59.4
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 7.7e-132 474.6 403 60.0
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 2.2e-131 473.0 390 62.3
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 3.8e-131 472.2 379 64.9
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 5.0e-131 471.9 378 61.9
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 8.5e-131 471.1 395 62.3
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 1.5e-130 470.3 463 53.6
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 1.9e-130 469.9 369 63.7
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 3.2e-130 469.2 405 60.2
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 1.8e-128 463.4 381 60.9
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 9.1e-125 451.1 499 50.1
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 4.2e-122 442.2 385 58.2
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 4.2e-122 442.2 385 58.2
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.2e-121 440.7 347 63.4
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 1.8e-120 436.8 362 62.4
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 4.4e-111 405.6 332 63.6
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.3e-110 404.1 337 63.8
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 7.8e-108 394.8 314 64.6
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 8.0e-105 384.8 399 53.9
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 1.4e-104 384.0 319 62.4
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.6e-100 370.5 377 55.4
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 7.3e-98 361.7 404 49.8
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 9.8e-95 351.3 296 58.4
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 4.9e-94 349.0 381 53.5
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 3.6e-89 332.8 380 47.4
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 4.9e-86 322.4 314 57.0
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.7e-78 297.4 370 46.5
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 6.4e-78 295.4 252 63.5
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 7.6e-71 271.9 330 48.8
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.8e-70 269.6 201 67.2
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 4.2e-69 266.2 201 67.2
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.2e-68 264.6 371 41.8
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 3.3e-58 229.9 206 56.3
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.4e-40 171.4 120 68.3
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.4e-40 171.4 125 64.8
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.2e-36 158.3 111 68.5
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.6e-36 156.4 109 67.0
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.1e-34 151.8 109 65.1
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.5e-34 150.6 109 65.1
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 2.4e-32 144.1 121 61.2
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 5.0e-30 136.3 102 65.7
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 1.2e-23 115.2 87 63.2
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 3.5e-23 113.6 87 62.1
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.7e-22 111.3 79 65.8
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 3.6e-20 103.6 68 66.2
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 6.1e-20 102.8 66 68.2
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 9.7e-18 95.5 66 65.2
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 7.7e-15 85.9 103 50.5
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.0e-14 85.5 82 57.3
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 1.5e-13 81.6 49 71.4
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 1.9e-13 81.3 105 48.6
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 2.1e-12 77.8 66 54.5
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 8.8e-11 72.4 51 66.7
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 7.5e-10 69.3 41 73.2
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.4e-08 64.3 205 32.7


User provided reference genes

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