Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 5.4e-274 947.2 528 100.0
MapolyY_A0037 Marchantia polymorpha HOM05D005116 ORTHO05D005937 3.2e-48 197.2 101 99.0
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.2e-44 185.3 224 49.6
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.1e-37 162.2 243 42.8
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 9.5e-37 159.1 276 37.7
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.8e-36 157.5 273 39.6
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.8e-36 157.5 273 39.6
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 2.8e-36 157.5 232 40.9
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 3.6e-36 157.1 228 43.0
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 4.7e-36 156.8 231 42.0
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 6.2e-36 156.4 221 43.0
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.1e-35 155.6 350 33.4
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 1.4e-35 155.2 226 42.9
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.4e-35 155.2 293 39.6
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.4e-35 155.2 273 36.6
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 1.8e-35 154.8 273 36.3
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 2.3e-35 154.5 220 43.6
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.3e-35 154.5 226 42.0
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.3e-35 154.5 226 42.0
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 2.3e-35 154.5 229 42.8
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 3.1e-35 154.1 226 42.0
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 3.1e-35 154.1 274 39.4
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 4.0e-35 153.7 226 42.5
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 4.0e-35 153.7 227 42.3
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 5.2e-35 153.3 249 41.0
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 6.8e-35 152.9 219 42.9
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 6.8e-35 152.9 361 34.6
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 8.9e-35 152.5 221 42.1
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.2e-34 152.1 252 38.9
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.5e-34 151.8 228 43.4
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.5e-34 151.8 244 41.0
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.5e-34 151.8 367 34.3
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.0e-34 151.4 158 54.4
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.6e-34 151.0 254 40.6
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.6e-34 151.0 223 41.7
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 2.6e-34 151.0 208 44.7
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 3.4e-34 150.6 223 41.7
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 4.4e-34 150.2 236 41.1
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 5.8e-34 149.8 267 37.1
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 5.8e-34 149.8 389 34.4
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 7.5e-34 149.4 247 40.9
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 9.8e-34 149.1 160 50.0
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 9.8e-34 149.1 219 41.1
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 4.9e-33 146.7 219 41.1
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 4.9e-33 146.7 290 35.9
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 4.9e-33 146.7 304 34.9
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 6.4e-33 146.4 273 39.2
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 6.4e-33 146.4 252 39.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 6.4e-33 146.4 290 38.3
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.1e-32 145.6 158 48.7
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.1e-32 145.6 214 40.7
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 1.1e-32 145.6 294 35.4
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 1.4e-32 145.2 232 40.5
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.4e-32 145.2 231 40.7
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 1.9e-32 144.8 295 36.6
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 2.4e-32 144.4 228 43.0
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 2.4e-32 144.4 266 39.1
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 2.4e-32 144.4 239 38.5
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 3.2e-32 144.1 207 40.1
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 3.2e-32 144.1 219 41.6
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 4.1e-32 143.7 154 54.5
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 4.1e-32 143.7 231 41.1
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 4.1e-32 143.7 285 36.8
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 5.4e-32 143.3 219 39.3
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 5.4e-32 143.3 212 41.0
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 7.1e-32 142.9 275 34.9
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 9.2e-32 142.5 291 37.1
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.2e-31 142.1 212 39.6
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.6e-31 141.7 263 36.9
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.6e-31 141.7 270 38.9
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 2.7e-31 141.0 307 36.2
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 4.6e-31 140.2 286 38.8
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 4.6e-31 140.2 389 33.9
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.3e-30 138.7 200 42.5
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.3e-30 138.7 216 41.2
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 3.9e-30 137.1 291 37.8
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 6.6e-30 136.3 266 36.1
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 1.9e-29 134.8 218 39.0
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.5e-29 134.4 272 37.1
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 4.3e-29 133.7 217 41.5
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 5.6e-29 133.3 159 44.7
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 5.6e-29 133.3 291 34.4
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 7.3e-29 132.9 233 38.6
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 9.5e-29 132.5 241 36.5
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.6e-28 131.7 379 31.4
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.6e-28 130.6 239 35.6
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.6e-28 130.6 239 35.6
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 4.7e-28 130.2 130 50.0
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 4.7e-28 130.2 223 40.4
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 6.2e-28 129.8 362 30.1
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 6.2e-28 129.8 405 32.8
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 6.2e-28 129.8 158 43.0
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 1.8e-27 128.3 137 48.9
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.8e-27 128.3 165 44.8
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 5.2e-27 126.7 155 47.1
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 1.7e-25 121.7 155 44.5
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.7e-25 121.7 155 44.5
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 3.7e-25 120.6 152 44.7
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 4.1e-24 117.1 145 45.5
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 6.0e-23 113.2 226 36.7
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 7.8e-23 112.8 163 44.2
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.3e-22 112.1 223 37.7
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 8.6e-22 109.4 109 53.2
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 8.6e-22 109.4 188 37.8
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.5e-21 108.6 143 44.8
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.9e-21 108.2 288 30.9
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 3.3e-21 107.5 267 31.8
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 4.7e-20 103.6 154 40.3
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.1e-19 102.4 226 33.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 5.2e-19 100.1 159 39.0
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 4.9e-17 93.6 205 36.1
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 9.3e-16 89.4 105 45.7
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.2e-15 89.0 118 41.5
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 7.8e-15 86.3 64 65.6
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 8.7e-14 82.8 180 33.9
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.1e-13 82.4 132 40.2
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 1.9e-13 81.6 87 50.6
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.3e-13 80.5 83 53.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.1e-11 75.9 398 26.1
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.6e-10 71.2 137 33.6
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 2.2e-09 68.2 94 46.8
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.4e-08 63.5 187 29.4
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 7.1e-08 63.2 176 33.5
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.1e-07 61.6 222 26.6
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 6.0e-07 60.1 44 61.4
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 2.3e-06 58.2 105 34.3
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 3.0e-06 57.8 166 29.5
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 6.6e-06 56.6 63 50.8


User provided reference genes

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