Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0089 Marchantia polymorpha HOM05D006089 ORTHO05D007345 0.0e+00 1441.4 705 100.0
Pp3c6_21550 Physcomitrium patens HOM05D006089 ORTHO05D007345 3.9e-171 605.9 600 49.8
AagrBONN_evm.TU.Sc2ySwM_117.1981 Anthoceros agrestis HOM05D006089 ORTHO05D007345 1.2e-159 567.8 680 44.1
SEGI_10037 Sequoiadendron giganteum HOM05D006089 ORTHO05D007345 7.7e-159 565.1 594 47.1
SMO165G0127 Selaginella moellendorffii HOM05D006089 ORTHO05D007345 1.2e-146 524.6 594 46.3
PGR042G2976 Punica granatum HOM05D006089 ORTHO05D007345 7.5e-146 521.9 619 45.2
Carub.0004s2759 Capsella rubella HOM05D006089 ORTHO05D007345 2.5e-141 506.9 617 45.7
DCAR_031889 Daucus carota HOM05D006089 ORTHO05D007345 2.5e-141 506.9 611 44.4
Sp4g27060 Schrenkiella parvula HOM05D006089 ORTHO05D007345 2.5e-141 506.9 615 46.2
AL4G44090 Arabidopsis lyrata HOM05D006089 ORTHO05D007345 9.4e-141 505.0 615 45.5
C04p71360 Brassica napus HOM05D006089 ORTHO05D007345 2.7e-140 503.4 615 45.7
Glyma.11G161947 Glycine max HOM05D006089 ORTHO05D007345 2.7e-140 503.4 593 44.0
Aa31LG1G26580 Aethionema arabicum HOM05D006089 ORTHO05D007345 3.6e-140 503.1 611 44.4
Os04g0550600 Oryza sativa ssp. japonica HOM05D006089 ORTHO05D007345 3.6e-140 503.1 599 45.7
VMungo1383G3667 Vigna mungo HOM05D006089 ORTHO05D007345 3.6e-140 503.1 592 44.6
A04p33590 Brassica napus HOM05D006089 ORTHO05D007345 4.7e-140 502.7 613 45.4
FAN01G0243 Fragaria x ananassa HOM05D006089 ORTHO05D007345 1.4e-139 501.1 597 45.6
Gorai.008G107600 Gossypium raimondii HOM05D006089 ORTHO05D007345 1.8e-139 500.7 593 44.9
Lj1g0018675 Lotus japonicus HOM05D006089 ORTHO05D007345 2.3e-139 500.4 609 44.7
BraA04t18821Z Brassica rapa HOM05D006089 ORTHO05D007345 4.0e-139 499.6 611 45.7
Nitab4.5_0004415g0050 Nicotiana tabacum HOM05D006089 ORTHO05D007345 5.2e-139 499.2 607 44.2
BolC4t28641H Brassica oleracea HOM05D006089 ORTHO05D007345 8.8e-139 498.4 611 45.0
CARHR140250 Cardamine hirsuta HOM05D006089 ORTHO05D007345 8.8e-139 498.4 613 44.7
Gohir.D12G098900 Gossypium hirsutum HOM05D006089 ORTHO05D007345 8.8e-139 498.4 593 44.7
PGSC0003DMG400026032 Solanum tuberosum HOM05D006089 ORTHO05D007345 8.8e-139 498.4 609 43.7
arahy.Tifrunner.gnm1.ann1.6Q8RNL Arachis hypogaea HOM05D006089 ORTHO05D007345 1.2e-138 498.0 612 43.3
arahy.Tifrunner.gnm1.ann1.CQPK1H Arachis hypogaea HOM05D006089 ORTHO05D007345 2.0e-138 497.3 610 43.4
FAN06G0349 Fragaria x ananassa HOM05D006089 ORTHO05D007345 2.0e-138 497.3 597 45.2
Glyma.01G073200 Glycine max HOM05D006089 ORTHO05D007345 2.0e-138 497.3 594 43.8
HanXRQChr13g0422761 Helianthus annuus HOM05D006089 ORTHO05D007345 2.0e-138 497.3 605 44.5
TWI14G0524 Tripterygium wilfordii HOM05D006089 ORTHO05D007345 2.0e-138 497.3 624 43.6
FvH4_7g10450 Fragaria vesca HOM05D006089 ORTHO05D007345 2.6e-138 496.9 597 45.2
FAN06G2506 Fragaria x ananassa HOM05D006089 ORTHO05D007345 3.4e-138 496.5 597 45.2
Nitab4.5_0003110g0040 Nicotiana tabacum HOM05D006089 ORTHO05D007345 4.4e-138 496.1 606 44.2
FAN03G1053 Fragaria x ananassa HOM05D006089 ORTHO05D007345 5.7e-138 495.7 597 44.9
ECA240G4128 Erigeron canadensis HOM05D006089 ORTHO05D007345 9.8e-138 495.0 621 43.2
GSVIVG01018217001 Vitis vinifera HOM05D006089 ORTHO05D007345 9.8e-138 495.0 634 44.2
Duzib138G0106 Durio zibethinus HOM05D006089 ORTHO05D007345 1.3e-137 494.6 597 44.2
Sabra14G0041400 Salix brachista HOM05D006089 ORTHO05D007345 1.3e-137 494.6 596 45.1
Manes.05G051700 Manihot esculenta HOM05D006089 ORTHO05D007345 1.7e-137 494.2 654 42.7
Aqoxy5G04142 Aquilegia oxysepala HOM05D006089 ORTHO05D007345 2.2e-137 493.8 614 42.8
Cc02_g24750 Coffea canephora HOM05D006089 ORTHO05D007345 2.2e-137 493.8 645 42.0
Medtr7g045370 Medicago truncatula HOM05D006089 ORTHO05D007345 2.2e-137 493.8 589 44.3
Zm00001eb074640 Zea mays HOM05D006089 ORTHO05D007345 2.2e-137 493.8 600 44.7
Cfa011118 Carpinus fangiana HOM05D006089 ORTHO05D007345 2.8e-137 493.4 593 45.2
CiPaw.13G030000 Carya illinoinensis HOM05D006089 ORTHO05D007345 2.8e-137 493.4 619 43.8
Ciclev10027500m.g Citrus clementina HOM05D006089 ORTHO05D007345 3.7e-137 493.0 621 42.5
Peaxi162Scf00377g00829 Petunia axillaris HOM05D006089 ORTHO05D007345 3.7e-137 493.0 606 44.2
Gohir.A12G096200 Gossypium hirsutum HOM05D006089 ORTHO05D007345 4.8e-137 492.7 593 44.2
Oeu002553.1 Olea europaea HOM05D006089 ORTHO05D007345 4.8e-137 492.7 610 43.4
Phvul.008G152801 Phaseolus vulgaris HOM05D006089 ORTHO05D007345 8.3e-137 491.9 592 43.6
QL04p034802 Quercus lobata HOM05D006089 ORTHO05D007345 8.3e-137 491.9 609 44.5
Actinidia22779 Actinidia chinensis HOM05D006089 ORTHO05D007345 3.1e-136 490.0 595 44.2
Potri.014G056800 Populus trichocarpa HOM05D006089 ORTHO05D007345 4.1e-136 489.6 644 43.3
unitig_26.g8876 Utricularia gibba HOM05D006089 ORTHO05D007345 5.4e-136 489.2 604 43.9
Atru.chr3.878 Acer truncatum HOM05D006089 ORTHO05D007345 9.1e-136 488.4 608 42.9
Ca_02316_v3 Cicer arietinum L. HOM05D006089 ORTHO05D007345 1.2e-135 488.0 619 42.6
Nn1g00934 Nelumbo nucifera HOM05D006089 ORTHO05D007345 1.6e-135 487.6 595 46.1
Atru.chr3.880 Acer truncatum HOM05D006089 ORTHO05D007345 2.0e-135 487.3 610 42.8
MD07G1110600 Malus domestica HOM05D006089 ORTHO05D007345 2.0e-135 487.3 647 42.7
Thecc.01G387500 Theobroma cacao HOM05D006089 ORTHO05D007345 4.5e-135 486.1 598 44.3
BcaC02g07127 Brassica carinata HOM05D006089 ORTHO05D007345 1.0e-134 485.0 601 44.9
CAN.G899.28 Capsicum annuum HOM05D006089 ORTHO05D007345 1.3e-134 484.6 614 44.3
THA.LOC104817203 Tarenaya hassleriana HOM05D006089 ORTHO05D007345 1.3e-134 484.6 614 44.0
Atru.chr3.879 Acer truncatum HOM05D006089 ORTHO05D007345 1.7e-134 484.2 608 42.6
vmacro13470 Vaccinium macrocarpon HOM05D006089 ORTHO05D007345 2.3e-134 483.8 602 44.0
EL10Ac1g00808 Beta vulgaris HOM05D006089 ORTHO05D007345 2.9e-134 483.4 597 43.6
Lsat_1_v5_gn_3_130781 Lactuca sativa HOM05D006089 ORTHO05D007345 2.9e-134 483.4 619 42.8
Eucgr.E01594 Eucalyptus grandis HOM05D006089 ORTHO05D007345 5.0e-134 482.6 624 42.9
RcHm_v2.0_Chr1g0348201 Rosa chinensis HOM05D006089 ORTHO05D007345 5.0e-134 482.6 621 43.8
PSO782G3316 Papaver somniferum HOM05D006089 ORTHO05D007345 8.6e-134 481.9 594 44.9
Prupe.2G133900 Prunus persica HOM05D006089 ORTHO05D007345 1.1e-133 481.5 649 41.3
SalBow5G0249 Salvia bowleyana HOM05D006089 ORTHO05D007345 1.1e-133 481.5 603 42.5
Sed0027986 Sechium edule HOM05D006089 ORTHO05D007345 1.1e-133 481.5 593 45.2
AT2G44990 Arabidopsis thaliana HOM05D006089 ORTHO05D007345 1.2e-132 478.0 601 44.8
Thhalv10001733m.g Eutrema salsugineum HOM05D006089 ORTHO05D007345 1.2e-132 478.0 597 44.9
PSO478G2689 Papaver somniferum HOM05D006089 ORTHO05D007345 2.8e-132 476.9 593 44.9
Sopen01g036390 Solanum pennellii HOM05D006089 ORTHO05D007345 4.7e-132 476.1 609 42.7
Lsat_1_v5_gn_3_130581 Lactuca sativa HOM05D006089 ORTHO05D007345 1.4e-131 474.6 636 41.5
CsaV3_6G008730 Cucumis sativus L. HOM05D006089 ORTHO05D007345 6.8e-131 472.2 623 42.5
Sc26g0001370 Simmondsia chinensis HOM05D006089 ORTHO05D007345 6.8e-131 472.2 594 43.1
CSS0033793 Camellia sinensis var. sinensis HOM05D006089 ORTHO05D007345 2.6e-130 470.3 594 43.6
CSS0041110 Camellia sinensis var. sinensis HOM05D006089 ORTHO05D007345 1.3e-129 468.0 581 44.2
Cpa.g.sc22.7 Carica papaya HOM05D006089 ORTHO05D007345 6.3e-129 465.7 608 43.9
Lsat_1_v5_gn_3_129760 Lactuca sativa HOM05D006089 ORTHO05D007345 1.4e-128 464.5 618 41.4
HPP92_022466 Vanilla planifolia HOM05D006089 ORTHO05D007345 2.7e-127 460.3 575 44.2
Migut.B01565 Erythranthe guttata HOM05D006089 ORTHO05D007345 1.6e-124 451.1 620 40.8
RcHm_v2.0_Chr1g0348141 Rosa chinensis HOM05D006089 ORTHO05D007345 2.1e-124 450.7 604 41.7
COL.COLO4_12447 Corchorus olitorius HOM05D006089 ORTHO05D007345 2.8e-124 450.3 592 42.6
RcHm_v2.0_Chr1g0342921 Rosa chinensis HOM05D006089 ORTHO05D007345 4.7e-124 449.5 598 41.5
TAR352G0004 Trochodendron aralioides HOM05D006089 ORTHO05D007345 1.2e-122 444.9 592 43.4
Psat3g158440 Pisum sativum HOM05D006089 ORTHO05D007345 3.4e-122 443.4 558 43.9
MELO3C022291.2 Cucumis melo HOM05D006089 ORTHO05D007345 1.2e-119 434.9 582 42.4
Hma1.2p1_0681F.1_g202480 Hydrangea macrophylla HOM05D006089 ORTHO05D007345 2.7e-119 433.7 574 42.5
Haze_02744 Corylus avellana HOM05D006089 ORTHO05D007345 5.0e-118 429.5 589 42.1
ATR0057G126 Amborella trichopoda HOM05D006089 ORTHO05D007345 3.6e-116 423.3 796 34.2
Dinv44096 Davidia involucrata HOM05D006089 ORTHO05D007345 1.4e-115 421.4 521 43.8
Actinidia22834 Actinidia chinensis HOM05D006089 ORTHO05D007345 3.1e-115 420.2 595 40.5
AUR62004137 Chenopodium quinoa HOM05D006089 ORTHO05D007345 4.4e-114 416.4 593 40.1
SGA_v2.0_scaffold52G19204 Striga asiatica HOM05D006089 ORTHO05D007345 2.9e-113 413.7 604 39.9
ClCG06G002420 Citrullus lanatus HOM05D006089 ORTHO05D007345 5.4e-112 409.5 636 38.2
CDE11G1089 Ceratophyllum demersum HOM05D006089 ORTHO05D007345 1.6e-111 407.9 595 38.5
Lj7C540G12 Lonicera japonica HOM05D006089 ORTHO05D007345 4.1e-104 383.3 555 40.2
Aqoxy1G01632 Aquilegia oxysepala HOM05D006089 ORTHO05D007345 4.7e-100 369.8 510 39.4
TAR375G0204 Trochodendron aralioides HOM05D006089 ORTHO05D007345 2.2e-89 334.3 467 42.4
RcHm_v2.0_Chr1g0348171 Rosa chinensis HOM05D006089 ORTHO05D007345 1.1e-88 332.0 543 35.9
Rhsim07G0033200 Rhododendron simsii HOM05D006089 ORTHO05D007345 3.5e-79 300.4 363 45.2
Lalb_Chr03g0040091 Lupinus albus HOM05D006089 ORTHO05D007345 5.5e-72 276.6 314 45.5
TPR.G39056 Trifolium pratense HOM05D006089 ORTHO05D007345 5.1e-70 270.0 297 47.1
HPP92_014493 Vanilla planifolia HOM05D006089 ORTHO05D007345 5.1e-70 270.0 372 41.7
TPR.G39066 Trifolium pratense HOM05D006089 ORTHO05D007345 2.5e-56 224.6 290 41.7
AUR62013699 Chenopodium quinoa HOM05D006089 ORTHO05D007345 2.3e-54 218.0 289 41.5
Hma1.2p1_0681F.1_g202470 Hydrangea macrophylla HOM05D006089 ORTHO05D007345 2.4e-51 208.0 245 44.9
Lalb_Chr03g0040081 Lupinus albus HOM05D006089 ORTHO05D007345 4.8e-44 183.7 248 42.3
HPP92_014494 Vanilla planifolia HOM05D006089 ORTHO05D007345 8.2e-36 156.4 160 50.0
MCO11G542 Micromonas commoda HOM05D006089 ORTHO05D007345 2.4e-35 154.8 588 28.2
RcHm_v2.0_Chr1g0342931 Rosa chinensis HOM05D006089 ORTHO05D007345 2.7e-31 141.4 150 46.0
Cre12.g488350 Chlamydomonas reinhardtii HOM05D006089 ORTHO05D007345 4.5e-26 124.0 614 24.6
MSTRG.20711 Avicennia marina HOM05D006089 ORTHO05D007345 4.2e-24 117.5 110 48.2
Aqoxy1G01631 Aquilegia oxysepala HOM05D006089 ORTHO05D007345 2.3e-17 95.1 97 51.5
Cre16.g657800 Chlamydomonas reinhardtii HOM05D000433 ORTHO05D007345 2.3e-17 95.1 571 24.3
MCO09G176 Micromonas commoda HOM05D006089 ORTHO05D007345 5.0e-17 94.0 195 32.3
Cre06.g278199 Chlamydomonas reinhardtii HOM05D006089 ORTHO05D007345 6.8e-14 83.6 140 37.1
PRCOL_00006947 Prasinoderma coloniale HOM05D006089 ORTHO05D007345 8.3e-12 76.6 145 35.9
Mapoly0012s0197 Marchantia polymorpha HOM05D000433 ORTHO05D003991 4.1e-11 74.3 614 22.1
RcHm_v2.0_Chr4g0397001 Rosa chinensis HOM05D000433 ORTHO05D000443 7.0e-11 73.6 374 25.1
FAN12G0220 Fragaria x ananassa HOM05D000433 ORTHO05D000443 1.9e-08 65.5 380 25.3
Mapoly0066s0017 Marchantia polymorpha HOM05D000433 ORTHO05D003991 3.3e-08 64.7 153 32.0
Pp3c6_21628 Physcomitrium patens HOM05D006089 ORTHO05D007345 3.3e-08 64.7 51 54.9
FvH4_4g05900 Fragaria vesca HOM05D000433 ORTHO05D000443 4.3e-08 64.3 379 24.3
DCAR_003121 Daucus carota HOM05D000433 ORTHO05D003991 9.5e-08 63.2 189 30.2
MCO04G052 Micromonas commoda HOM05D000433 ORTHO05D000443 1.2e-07 62.8 625 23.0
PRCOL_00001536 Prasinoderma coloniale HOM05D000433 ORTHO05D005978 1.2e-07 62.8 174 26.4
SMO244G0030 Selaginella moellendorffii HOM05D000433 ORTHO05D003991 1.2e-07 62.8 175 29.7
Psat7g201920 Pisum sativum HOM05D000835 ORTHO05D004825 1.6e-07 62.4 84 42.9
FAN07G1252 Fragaria x ananassa HOM05D000433 ORTHO05D000443 2.8e-07 61.6 374 24.3
MCO11G754 Micromonas commoda HOM05D006089 ORTHO05D007345 4.7e-07 60.8 134 35.1
Aqoxy1G03982 Aquilegia oxysepala HOM05D005027 ORTHO05D005978 6.1e-07 60.5 145 32.4
Actinidia13335 Actinidia chinensis HOM05D005027 ORTHO05D005978 2.3e-06 58.5 144 31.2
COL.COLO4_20969 Corchorus olitorius HOM05D005027 ORTHO05D005978 2.3e-06 58.5 189 30.2
DCAR_003120 Daucus carota HOM05D000433 ORTHO05D003991 3.1e-06 58.2 171 29.2
Gohir.D07G025900 Gossypium hirsutum HOM05D005027 ORTHO05D005978 3.1e-06 58.2 146 31.5
Gorai.001G027000 Gossypium raimondii HOM05D005027 ORTHO05D005978 3.1e-06 58.2 146 31.5
Prupe.1G448400 Prunus persica HOM05D005027 ORTHO05D005978 6.8e-06 57.0 144 31.2
CiPaw.01G125700 Carya illinoinensis HOM05D000433 ORTHO05D000443 8.9e-06 56.6 376 22.3
Duzib168G0183 Durio zibethinus HOM05D005027 ORTHO05D005978 8.9e-06 56.6 144 31.2
Os06g0162550 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D003991 8.9e-06 56.6 197 27.4
PSO210G1252 Papaver somniferum HOM05D005027 ORTHO05D005978 8.9e-06 56.6 209 28.2


User provided reference genes

Program Settings