Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0082 Marchantia polymorpha HOM05D006859 ORTHO05D007990 5.4e-106 387.9 228 100.0
Thecc.03G243500 Theobroma cacao HOM05D006859 ORTHO05D007990 2.8e-17 93.2 140 55.0
AagrBONN_evm.TU.Sc2ySwM_228.2564 Anthoceros agrestis HOM05D006859 ORTHO05D007990 4.7e-17 92.4 117 56.4
Cpa.g.sc89.10 Carica papaya HOM05D006859 ORTHO05D007990 1.8e-16 90.5 174 44.8
Gohir.A08G165800 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.8e-16 90.5 113 58.4
Hund11327 Selenicereus undatus HOM05D006859 ORTHO05D007990 2.3e-16 90.1 114 56.1
EL10Ac5g12291 Beta vulgaris HOM05D006859 ORTHO05D007990 6.8e-16 88.6 112 58.9
PGR031G1874 Punica granatum HOM05D006859 ORTHO05D007990 1.5e-15 87.4 113 56.6
Sc01g0008110 Simmondsia chinensis HOM05D006859 ORTHO05D007990 1.5e-15 87.4 102 60.8
Duzib205G1414 Durio zibethinus HOM05D006859 ORTHO05D007990 5.8e-15 85.5 167 49.7
MD00G1165000 Malus domestica HOM05D006859 ORTHO05D007990 7.5e-15 85.1 142 52.1
Dinv28858 Davidia involucrata HOM05D006859 ORTHO05D007990 9.8e-15 84.7 123 53.7
FvH4_5g20140 Fragaria vesca HOM05D006859 ORTHO05D007990 9.8e-15 84.7 136 50.0
FAN08G0582 Fragaria x ananassa HOM05D006859 ORTHO05D007990 9.8e-15 84.7 136 50.0
FAN18G2706 Fragaria x ananassa HOM05D006859 ORTHO05D007990 9.8e-15 84.7 136 50.0
TWI15G0070 Tripterygium wilfordii HOM05D006859 ORTHO05D007990 9.8e-15 84.7 160 43.8
FAN04G1798 Fragaria x ananassa HOM05D006859 ORTHO05D007990 1.3e-14 84.3 136 50.0
SalBow6G1554 Salvia bowleyana HOM05D006859 ORTHO05D007990 1.7e-14 84.0 124 52.4
CSS0046225 Camellia sinensis var. sinensis HOM05D006859 ORTHO05D007990 3.7e-14 82.8 111 55.9
RcHm_v2.0_Chr7g0205091 Rosa chinensis HOM05D006859 ORTHO05D007990 4.9e-14 82.4 159 45.3
Aqoxy7G00861 Aquilegia oxysepala HOM05D006859 ORTHO05D007990 6.4e-14 82.0 106 56.6
Lj2g0014108 Lotus japonicus HOM05D006859 ORTHO05D007990 6.4e-14 82.0 164 43.9
PSO717G0098 Papaver somniferum HOM05D006859 ORTHO05D007990 8.3e-14 81.6 113 54.0
TPR.G31422 Trifolium pratense HOM05D006859 ORTHO05D007990 8.3e-14 81.6 170 44.1
QL12p009356 Quercus lobata HOM05D006859 ORTHO05D007990 1.1e-13 81.3 107 56.1
HanXRQChr06g0164541 Helianthus annuus HOM05D006859 ORTHO05D007990 1.4e-13 80.9 110 56.4
Oeu017213.1 Olea europaea HOM05D006859 ORTHO05D007990 1.9e-13 80.5 117 52.1
Phvul.002G001000 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 1.9e-13 80.5 179 41.9
Duzib068G0861 Durio zibethinus HOM05D006859 ORTHO05D007990 2.4e-13 80.1 142 50.7
Lalb_Chr16g0379391 Lupinus albus HOM05D006859 ORTHO05D007990 2.4e-13 80.1 169 39.6
Medtr5g013280 Medicago truncatula HOM05D006859 ORTHO05D007990 2.4e-13 80.1 165 43.0
AT4G17540 Arabidopsis thaliana HOM05D006859 ORTHO05D007990 3.2e-13 79.7 124 47.6
ECA236G3610 Erigeron canadensis HOM05D006859 ORTHO05D007990 3.2e-13 79.7 203 39.9
Migut.A01048 Erythranthe guttata HOM05D006859 ORTHO05D007990 3.2e-13 79.7 120 50.8
Cc08_g11510 Coffea canephora HOM05D006859 ORTHO05D007990 4.1e-13 79.3 113 54.0
Gohir.D08G184600 Gossypium hirsutum HOM05D006859 ORTHO05D007990 4.1e-13 79.3 216 38.9
Gorai.004G193900 Gossypium raimondii HOM05D006859 ORTHO05D007990 4.1e-13 79.3 216 38.9
HPP92_014892 Vanilla planifolia HOM05D006859 ORTHO05D007990 4.1e-13 79.3 107 56.1
VMungo1215G2710 Vigna mungo HOM05D006859 ORTHO05D007990 4.1e-13 79.3 179 40.8
RhsimUnG0092900 Rhododendron simsii HOM05D006859 ORTHO05D007990 5.4e-13 79.0 149 45.0
TAR636G0545 Trochodendron aralioides HOM05D006859 ORTHO05D007990 5.4e-13 79.0 121 54.5
Cfa012667 Carpinus fangiana HOM05D006859 ORTHO05D007990 9.2e-13 78.2 108 52.8
CANSAT21G2559 Cannabis sativa HOM05D006859 ORTHO05D007990 1.2e-12 77.8 118 55.1
Sp7g16620 Schrenkiella parvula HOM05D006859 ORTHO05D007990 1.6e-12 77.4 152 42.8
BcaC09g51632 Brassica carinata HOM05D006859 ORTHO05D007990 2.1e-12 77.0 152 44.1
Thhalv10025654m.g Eutrema salsugineum HOM05D006859 ORTHO05D007990 2.1e-12 77.0 151 45.0
MD04G1050900 Malus domestica HOM05D006859 ORTHO05D007990 2.1e-12 77.0 161 44.1
Sabra03G0053000 Salix brachista HOM05D006859 ORTHO05D007990 2.1e-12 77.0 194 40.2
MELO3C003330.2 Cucumis melo HOM05D006859 ORTHO05D007990 2.7e-12 76.6 155 45.2
Eucgr.D02124 Eucalyptus grandis HOM05D006859 ORTHO05D007990 2.7e-12 76.6 194 43.3
Lsat_1_v5_gn_1_53480 Lactuca sativa HOM05D006859 ORTHO05D007990 2.7e-12 76.6 110 51.8
Prupe.5G059200 Prunus persica HOM05D006859 ORTHO05D007990 2.7e-12 76.6 195 41.5
ATR0665G206 Amborella trichopoda HOM05D006859 ORTHO05D007990 4.6e-12 75.9 135 48.1
C01p11190 Brassica napus HOM05D006859 ORTHO05D007990 4.6e-12 75.9 152 43.4
CARHR224240 Cardamine hirsuta HOM05D006859 ORTHO05D007990 4.6e-12 75.9 138 44.2
Actinidia25901 Actinidia chinensis HOM05D006859 ORTHO05D007990 6.0e-12 75.5 213 40.8
A01p09620 Brassica napus HOM05D006859 ORTHO05D007990 6.0e-12 75.5 152 44.1
Carub.0007s2385 Capsella rubella HOM05D006859 ORTHO05D007990 6.0e-12 75.5 117 47.9
SGA_v2.0_scaffold199G41240 Striga asiatica HOM05D006859 ORTHO05D007990 6.0e-12 75.5 162 36.4
BraA01t00904Z Brassica rapa HOM05D006859 ORTHO05D007990 1.7e-11 73.9 152 43.4
unitig_8.g3018 Utricularia gibba HOM05D000481 ORTHO05D007990 1.7e-11 73.9 124 49.2
GSVIVG01007347001 Vitis vinifera HOM05D006859 ORTHO05D007990 1.7e-11 73.9 80 55.0
MBI04_g28364_MAGBIO Magnolia biondii HOM05D006859 ORTHO05D007990 2.3e-11 73.6 99 56.6
Glyma.01G205600 Glycine max HOM05D006859 ORTHO05D007990 3.0e-11 73.2 83 51.8
BcaNung00082 Brassica carinata HOM05D006859 ORTHO05D007990 3.9e-11 72.8 149 40.9
BolC1t01085H Brassica oleracea HOM05D006859 ORTHO05D007990 3.9e-11 72.8 152 42.1
Nn1g00823 Nelumbo nucifera HOM05D006859 ORTHO05D007990 3.9e-11 72.8 203 39.9
vmacro00041 Vaccinium macrocarpon HOM05D006859 ORTHO05D007990 3.9e-11 72.8 178 41.6
Actinidia02186 Actinidia chinensis HOM05D006859 ORTHO05D007990 5.1e-11 72.4 84 51.2
THA.LOC104798356 Tarenaya hassleriana HOM05D006859 ORTHO05D007990 6.6e-11 72.0 119 47.9
Os10g0563400 Oryza sativa ssp. japonica HOM05D006859 ORTHO05D007990 8.6e-11 71.6 178 41.6
Zm00001eb391020 Zea mays HOM05D006859 ORTHO05D007990 8.6e-11 71.6 121 49.6
CDE11G0841 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 1.9e-10 70.5 108 50.9
PSO675G5712 Papaver somniferum HOM05D006859 ORTHO05D007990 1.9e-10 70.5 226 36.7
Psat2g176200 Pisum sativum HOM05D006859 ORTHO05D007990 1.9e-10 70.5 170 41.2
Potri.003G082200 Populus trichocarpa HOM05D006859 ORTHO05D007990 1.9e-10 70.5 206 38.3
Pp3c27_6080 Physcomitrium patens HOM05D006859 ORTHO05D007990 5.6e-10 68.9 173 42.8
Atru.chr9.1231 Acer truncatum HOM05D006859 ORTHO05D007990 6.2e-09 65.5 99 53.5
Nitab4.5_0000506g0100 Nicotiana tabacum HOM05D006859 ORTHO05D007990 2.3e-08 63.5 116 48.3
Nitab4.5_0003456g0040 Nicotiana tabacum HOM05D006859 ORTHO05D007990 5.2e-08 62.4 102 52.9
Ciclev10021440m.g Citrus clementina HOM05D006859 ORTHO05D007990 8.9e-08 61.6 154 36.4
arahy.Tifrunner.gnm1.ann1.B2NILF Arachis hypogaea HOM05D006859 ORTHO05D007990 1.5e-07 60.8 153 40.5
arahy.Tifrunner.gnm1.ann1.WYE05V Arachis hypogaea HOM05D006859 ORTHO05D007990 1.5e-07 60.8 153 40.5
CBR_g52283 Chara braunii HOM05D006859 ORTHO05D007990 3.4e-07 59.7 131 45.8
PGSC0003DMG400024153 Solanum tuberosum HOM05D006859 ORTHO05D007990 6.4e-06 55.5 236 34.3
Manes.01G086700 Manihot esculenta HOM05D006859 ORTHO05D007990 8.4e-06 55.1 203 35.0


User provided reference genes

Program Settings