Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.4e-77 291.6 145 100.0
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.6e-47 193.0 138 63.0
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.4e-45 185.3 138 61.6
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.4e-45 184.9 138 61.6
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 3.8e-44 181.8 143 60.1
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.1e-43 180.3 141 59.6
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.9e-43 179.5 134 64.2
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.3e-41 172.6 138 60.9
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.0e-41 172.2 140 60.0
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 3.9e-41 171.8 134 60.4
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 6.6e-41 171.0 139 59.7
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 8.7e-41 170.6 134 60.4
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 1.9e-40 169.5 134 58.2
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.5e-40 169.1 134 59.7
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 4.3e-40 168.3 137 59.1
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 5.6e-40 167.9 134 57.5
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 7.3e-40 167.5 134 56.7
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.3e-39 166.8 134 59.7
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-39 166.0 137 55.5
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.1e-39 166.0 138 59.4
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 2.8e-39 165.6 134 55.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 2.8e-39 165.6 134 57.5
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 3.6e-39 165.2 134 56.7
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 4.8e-39 164.9 140 57.9
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 4.8e-39 164.9 134 56.0
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 6.2e-39 164.5 137 58.4
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 6.2e-39 164.5 137 58.4
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 6.2e-39 164.5 134 56.7
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 6.2e-39 164.5 141 56.7
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.1e-38 163.7 121 62.0
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.4e-38 163.3 134 55.2
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.4e-38 163.3 134 56.0
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.8e-38 162.9 136 55.9
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.4e-38 162.5 137 54.7
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.4e-38 162.5 137 54.7
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.4e-38 162.5 136 57.4
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.4e-38 162.5 136 57.4
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 3.1e-38 162.2 137 54.7
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 3.1e-38 162.2 134 56.7
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 3.1e-38 162.2 136 54.4
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 4.0e-38 161.8 134 54.5
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 4.0e-38 161.8 134 54.5
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.0e-38 161.8 134 59.0
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 5.3e-38 161.4 134 56.7
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 6.9e-38 161.0 139 54.0
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.9e-38 161.0 136 56.6
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 9.0e-38 160.6 137 54.0
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 9.0e-38 160.6 134 57.5
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.2e-37 160.2 134 57.5
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.2e-37 160.2 134 57.5
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 1.2e-37 160.2 134 56.7
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.5e-37 159.8 142 53.5
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 1.5e-37 159.8 137 53.3
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.5e-37 159.8 136 55.1
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 2.0e-37 159.5 134 53.0
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.0e-37 159.5 136 53.7
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 2.6e-37 159.1 134 56.7
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 2.6e-37 159.1 143 53.8
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 3.4e-37 158.7 134 53.7
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 3.4e-37 158.7 137 53.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 3.4e-37 158.7 132 59.8
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 5.8e-37 157.9 134 55.2
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 7.6e-37 157.5 137 52.6
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 7.6e-37 157.5 134 58.2
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 9.9e-37 157.1 137 54.0
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.3e-36 156.8 134 56.0
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.3e-36 156.8 134 55.2
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.3e-36 156.8 134 55.2
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.3e-36 156.8 133 58.6
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.3e-36 156.8 134 56.7
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.7e-36 156.4 136 52.2
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 1.7e-36 156.4 134 54.5
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.7e-36 156.4 134 54.5
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.7e-36 156.4 132 56.8
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.7e-36 156.4 137 54.0
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.7e-36 156.4 137 54.0
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.2e-36 156.0 134 52.2
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.9e-36 155.6 134 54.5
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 3.8e-36 155.2 134 54.5
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.8e-36 155.2 134 56.0
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 4.9e-36 154.8 134 53.7
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 4.9e-36 154.8 134 53.7
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 4.9e-36 154.8 137 52.6
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 4.9e-36 154.8 134 56.0
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 4.9e-36 154.8 134 52.2
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.9e-36 154.8 137 53.3
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 4.9e-36 154.8 133 57.1
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 6.4e-36 154.5 134 58.2
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 6.4e-36 154.5 136 53.7
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 8.4e-36 154.1 134 53.7
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 8.4e-36 154.1 134 55.2
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 8.4e-36 154.1 134 55.2
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 8.4e-36 154.1 136 53.7
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.1e-35 153.7 137 54.7
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 1.4e-35 153.3 134 52.2
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.9e-35 152.9 131 55.0
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.9e-35 152.9 136 52.9
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.9e-35 152.9 134 55.2
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 3.2e-35 152.1 153 49.0
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.2e-35 152.1 128 56.2
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 3.2e-35 152.1 133 57.1
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 5.4e-35 151.4 133 54.1
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 9.3e-35 150.6 134 52.2
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 9.3e-35 150.6 134 51.5
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 2.1e-34 149.4 134 53.0
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 2.1e-34 149.4 134 56.7
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.3e-33 146.7 162 45.1
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.3e-33 146.7 134 51.5
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 1.3e-33 146.7 112 60.7
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.3e-33 146.0 134 53.0
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 3.0e-33 145.6 140 50.0
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 3.0e-33 145.6 115 58.3
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 5.1e-33 144.8 112 58.0
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 6.7e-33 144.4 153 47.7
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.7e-33 144.4 123 57.7
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 6.7e-33 144.4 119 58.8
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.7e-33 144.1 138 51.4
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 8.7e-33 144.1 111 59.5
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.5e-32 143.3 108 59.3
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.9e-32 142.9 111 59.5
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.3e-32 142.1 139 51.1
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 4.3e-32 141.7 111 57.7
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 4.3e-32 141.7 125 53.6
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 5.6e-32 141.4 134 49.3
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.4e-32 141.0 137 53.3
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.4e-32 141.0 137 53.3
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.3e-31 140.2 118 57.6
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 3.7e-31 138.7 134 50.7
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 4.8e-31 138.3 134 49.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.1e-30 137.1 131 48.1
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.8e-30 136.3 135 50.4
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 4.0e-30 135.2 134 47.8
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 6.9e-30 134.4 110 56.4
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 4.9e-28 128.3 145 45.5
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 3.2e-27 125.6 128 45.3
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.2e-26 123.6 98 58.2
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.5e-24 115.9 120 50.0
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 9.6e-24 114.0 138 41.3
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-23 113.6 134 43.3
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 2.8e-23 112.5 138 48.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 1.4e-22 110.2 137 41.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 5.3e-22 108.2 99 51.5
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.2e-21 107.1 99 52.5
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 2.2e-20 102.8 89 52.8
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 6.5e-20 101.3 122 45.1
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 7.1e-19 97.8 127 40.9
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 7.1e-19 97.8 141 38.3
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 7.9e-18 94.4 134 40.3
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.9e-16 89.7 134 38.8
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 2.8e-15 85.9 76 52.6
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 8.2e-15 84.3 139 32.4
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.8e-14 83.2 108 44.4
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 3.8e-12 75.5 61 55.7
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 3.8e-12 75.5 100 44.0
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 5.0e-12 75.1 59 57.6
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.4e-09 67.0 54 51.9
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 3.0e-09 65.9 89 38.2
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 8.8e-09 64.3 107 37.4
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.1e-08 63.9 116 37.9
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 3.3e-08 62.4 71 50.7
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-06 55.5 46 54.3
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-06 55.5 46 54.3
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 4.1e-06 55.5 46 54.3
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 5.3e-06 55.1 46 54.3


User provided reference genes

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